Wall clock time and date at job start Tue Mar 31 2020 12:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46943 * 2 1 4 4 C 1.46496 * 120.00230 * 269.99885 * 3 2 1 5 5 C 1.53001 * 109.47298 * 270.00413 * 4 3 2 6 6 O 1.42898 * 109.47254 * 64.99666 * 5 4 3 7 7 C 1.42900 * 113.99797 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99354 * 90.00616 * 3 2 1 9 9 O 1.21729 * 119.99956 * 179.97438 * 8 3 2 10 10 C 1.46254 * 120.00587 * 359.97438 * 8 3 2 11 11 C 1.35023 * 120.00310 * 180.02562 * 10 8 3 12 12 C 1.46957 * 119.99860 * 180.02562 * 11 10 8 13 13 C 1.40027 * 120.10331 * 359.71295 * 12 11 10 14 14 C 1.37603 * 119.89523 * 179.78923 * 13 12 11 15 15 C 1.39167 * 120.10115 * 0.49821 * 14 13 12 16 16 O 1.35577 * 119.89656 * 179.76261 * 15 14 13 17 17 C 1.34777 * 116.99965 * 174.42496 * 16 15 14 18 18 H 1.08007 * 120.00251 * 5.04759 * 17 16 15 19 19 C 1.38716 * 120.00175 * 185.05653 * 17 16 15 20 20 N 1.31509 * 119.99959 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00367 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47466 * 119.99998 * 21 19 17 24 24 H 1.48505 * 109.47106 * 239.99699 * 21 19 17 25 25 C 1.39178 * 120.20663 * 359.73926 * 15 14 13 26 26 C 1.37591 * 120.10059 * 0.02562 * 25 15 14 27 27 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47391 * 299.99755 * 1 2 3 29 29 H 1.09004 * 109.46857 * 59.99646 * 1 2 3 30 30 H 1.09001 * 109.46699 * 240.00425 * 2 1 3 31 31 H 1.08991 * 109.47155 * 120.00557 * 2 1 3 32 32 H 1.09003 * 109.47199 * 30.00628 * 4 3 2 33 33 H 1.09002 * 109.46860 * 150.00365 * 4 3 2 34 34 H 1.09002 * 109.47162 * 185.00371 * 5 4 3 35 35 H 1.09004 * 109.46992 * 304.99955 * 5 4 3 36 36 H 1.09002 * 109.46648 * 60.00722 * 7 6 5 37 37 H 1.09004 * 109.46538 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47277 * 300.00700 * 7 6 5 39 39 H 1.07997 * 119.99741 * 0.28440 * 10 8 3 40 40 H 1.07997 * 119.99788 * 359.97438 * 11 10 8 41 41 H 1.07994 * 120.04843 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.94376 * 180.23584 * 14 13 12 43 43 H 0.97000 * 120.00320 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.94866 * 180.02562 * 25 15 14 45 45 H 1.07998 * 120.05327 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 8 3.8944 0.4434 -1.9935 7 6 5.2176 0.1097 -2.4175 8 6 2.2430 2.0164 1.1672 9 8 2.6492 3.1640 1.1674 10 6 1.9988 1.3271 2.4338 11 6 2.2235 1.9637 3.6032 12 6 1.9786 1.2708 4.8758 13 6 1.5067 -0.0476 4.8782 14 6 1.2831 -0.6938 6.0723 15 6 1.5153 -0.0356 7.2763 16 8 1.2890 -0.6747 8.4504 17 6 1.6417 -0.0260 9.5780 18 1 2.0068 0.9891 9.5254 19 6 1.5358 -0.6622 10.8061 20 7 1.0909 -1.8981 10.8703 21 14 2.0252 0.2365 12.3689 22 1 2.4907 1.6048 12.0279 23 1 0.8538 0.3236 13.2774 24 1 3.1209 -0.5048 13.0437 25 6 1.9797 1.2764 7.2789 26 6 2.2107 1.9290 6.0898 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.9156 2.4164 -2.6063 35 1 4.3863 2.1342 -0.9131 36 1 5.9279 0.3768 -1.6351 37 1 5.2773 -0.9610 -2.6129 38 1 5.4566 0.6588 -3.3282 39 1 1.6429 0.3075 2.4338 40 1 2.5838 2.9818 3.6032 41 1 1.3222 -0.5576 3.9444 42 1 0.9227 -1.7119 6.0751 43 1 1.0172 -2.3431 11.7290 44 1 2.1589 1.7831 8.2157 45 1 2.5714 2.9469 6.0927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298394269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:54 Heat of formation + Delta-G solvation = -67.169297 kcal Electronic energy + Delta-G solvation = -25626.414543 eV Core-core repulsion = 21803.437571 eV Total energy + Delta-G solvation = -3822.976972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.98371 -39.14810 -38.01692 -36.88567 -35.87103 -33.30019 -32.36202 -31.57904 -30.41961 -29.47511 -28.07299 -26.56264 -25.67111 -24.07553 -23.44481 -22.38711 -21.89055 -20.12053 -18.62320 -17.97509 -17.45966 -17.06751 -16.71694 -16.40030 -15.74040 -15.38324 -14.92036 -14.78119 -14.50137 -14.34764 -13.96086 -13.90428 -13.79593 -13.39339 -13.03677 -13.02949 -12.65423 -12.59773 -12.23379 -12.15618 -12.09098 -11.82215 -11.75148 -11.60762 -11.46971 -11.14336 -11.09259 -11.04918 -10.63561 -10.52405 -10.01373 -9.64207 -9.57579 -9.48307 -8.88248 -8.69297 -8.37124 -7.09654 -6.64513 -4.19338 1.09313 2.14506 2.56762 3.00996 3.03810 3.05130 3.10813 3.47982 3.62933 3.82712 4.52200 4.67389 4.80015 4.86981 4.93176 4.95542 5.02981 5.06107 5.08648 5.12373 5.20981 5.26595 5.34622 5.38702 5.45457 5.55092 5.56345 5.60863 5.68808 5.71418 5.77751 6.02334 6.08632 6.14676 6.39079 6.48542 6.57471 6.65232 6.80695 6.84305 6.93434 7.14397 7.24910 7.29188 7.47517 7.65079 7.81052 8.34016 8.80484 9.47750 10.52262 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.002101 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.070553 B =13321.516493 C =13526.094017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.608 5.608 4 C 0.121 3.879 5 C 0.044 3.956 6 O -0.389 6.389 7 C 0.032 3.968 8 C 0.557 3.443 9 O -0.562 6.562 10 C -0.281 4.281 11 C 0.036 3.964 12 C -0.197 4.197 13 C -0.043 4.043 14 C -0.199 4.199 15 C 0.167 3.833 16 O -0.163 6.163 17 C -0.392 4.392 18 H 0.098 0.902 19 C 0.041 3.959 20 N -0.852 5.852 21 Si 0.945 3.055 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.242 4.242 26 C -0.036 4.036 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.038 0.962 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.121 0.879 43 H 0.273 0.727 44 H 0.131 0.869 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 3.811 -21.877 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.341 5.341 4 C -0.002 4.002 5 C -0.033 4.033 6 O -0.308 6.308 7 C -0.064 4.064 8 C 0.351 3.649 9 O -0.444 6.444 10 C -0.302 4.302 11 C 0.016 3.984 12 C -0.198 4.198 13 C -0.061 4.061 14 C -0.218 4.218 15 C 0.110 3.890 16 O -0.064 6.064 17 C -0.468 4.468 18 H 0.115 0.885 19 C -0.165 4.165 20 N -0.485 5.485 21 Si 0.769 3.231 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.261 4.261 26 C -0.054 4.054 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.144 0.856 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.139 0.861 43 H 0.083 0.917 44 H 0.149 0.851 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.837 3.841 -21.598 22.119 hybrid contribution 0.505 0.503 0.685 0.988 sum 3.342 4.344 -20.913 21.619 Atomic orbital electron populations 1.22236 0.96119 1.02262 1.02481 1.21594 0.93929 0.82141 1.03778 1.47728 1.66568 1.14542 1.05247 1.21414 0.94327 0.98880 0.85613 1.23040 0.98355 0.82598 0.99341 1.87857 1.30014 1.25115 1.87771 1.22719 0.84235 1.01306 0.98168 1.18457 0.76461 0.85672 0.84338 1.90754 1.47610 1.18169 1.87831 1.22557 1.14391 1.01851 0.91399 1.22293 0.87360 0.97762 0.91014 1.18467 1.13629 0.95718 0.91989 1.20872 0.95418 0.93245 0.96583 1.20149 1.10865 1.00861 0.89954 1.19610 0.91134 0.90898 0.87316 1.83905 1.68678 1.42604 1.11230 1.21519 1.44644 0.98751 0.81884 0.88506 1.25395 0.96329 0.95944 0.98852 1.70022 1.40840 1.10991 1.26660 0.85584 0.78588 0.79144 0.79799 1.18871 1.19932 1.19922 1.21100 1.10442 0.95928 0.98644 1.20985 0.94930 0.98082 0.91400 0.91522 0.92042 0.92690 0.89684 0.90090 0.89995 0.88484 0.92643 0.92702 0.94123 0.89685 0.94289 0.85625 0.86050 0.86487 0.86130 0.91666 0.85134 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.11 1.02 5.66 -4.04 -0.02 1.00 16 3 N -0.61 -7.04 2.44 -175.39 -0.43 -7.47 16 4 C 0.12 1.18 5.81 -4.04 -0.02 1.16 16 5 C 0.04 0.42 6.28 37.16 0.23 0.65 16 6 O -0.39 -3.82 9.53 -35.23 -0.34 -4.16 16 7 C 0.03 0.24 11.01 101.05 1.11 1.35 16 8 C 0.56 8.16 7.60 -13.04 -0.10 8.06 16 9 O -0.56 -9.86 15.81 5.16 0.08 -9.78 16 10 C -0.28 -4.01 8.61 -37.51 -0.32 -4.34 16 11 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 12 C -0.20 -3.40 5.87 -105.02 -0.62 -4.01 16 13 C -0.04 -0.74 9.40 -39.14 -0.37 -1.11 16 14 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 15 C 0.17 3.84 6.66 -38.89 -0.26 3.58 16 16 O -0.16 -4.43 9.74 0.73 0.01 -4.43 16 17 C -0.39 -10.45 9.48 30.91 0.29 -10.15 16 18 H 0.10 2.38 5.18 -52.48 -0.27 2.10 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.85 -23.89 13.67 55.48 0.76 -23.13 16 21 Si 0.94 19.59 29.55 -169.99 -5.02 14.56 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 23 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.24 -5.03 9.14 -39.47 -0.36 -5.39 16 26 C -0.04 -0.64 9.78 -39.15 -0.38 -1.02 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.75 7.12 -51.93 -0.37 0.38 16 31 H 0.08 0.77 6.09 -51.93 -0.32 0.45 16 32 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 33 H 0.10 1.00 7.42 -51.93 -0.39 0.62 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.13 1.59 4.21 -52.49 -0.22 1.37 16 40 H 0.12 1.88 7.52 -52.49 -0.39 1.49 16 41 H 0.12 1.65 6.16 -52.49 -0.32 1.33 16 42 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.13 2.69 5.62 -52.49 -0.29 2.40 16 45 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 379.47 15.07 5.72 5.72 Total: -1.00 -31.13 379.47 -6.86 -37.99 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.36 Total: 5.20 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.28 Total: -14.51 kcal Atomic # 7 Polarization: -30.93 SS G_CDS: 0.33 Total: -30.60 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.25 Total: -18.37 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.13 -6.86 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298394269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.181 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds