Wall clock time and date at job start Tue Mar 31 2020 12:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46943 * 2 1 4 4 C 1.46496 * 120.00230 * 269.99885 * 3 2 1 5 5 C 1.53001 * 109.47298 * 270.00413 * 4 3 2 6 6 O 1.42898 * 109.47254 * 64.99666 * 5 4 3 7 7 C 1.42900 * 113.99797 * 179.97438 * 6 5 4 8 8 C 1.34773 * 119.99354 * 90.00616 * 3 2 1 9 9 O 1.21729 * 119.99956 * 179.97438 * 8 3 2 10 10 C 1.46254 * 120.00587 * 359.97438 * 8 3 2 11 11 C 1.35023 * 120.00310 * 180.02562 * 10 8 3 12 12 C 1.46957 * 119.99860 * 180.02562 * 11 10 8 13 13 C 1.40027 * 120.10331 * 359.71295 * 12 11 10 14 14 C 1.37603 * 119.89523 * 179.78923 * 13 12 11 15 15 C 1.39167 * 120.10115 * 0.49821 * 14 13 12 16 16 O 1.35577 * 119.89656 * 179.76261 * 15 14 13 17 17 C 1.34777 * 116.99965 * 174.42496 * 16 15 14 18 18 H 1.08007 * 120.00251 * 5.04759 * 17 16 15 19 19 C 1.38716 * 120.00175 * 185.05653 * 17 16 15 20 20 N 1.31509 * 119.99959 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00367 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47233 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47466 * 119.99998 * 21 19 17 24 24 H 1.48505 * 109.47106 * 239.99699 * 21 19 17 25 25 C 1.39178 * 120.20663 * 359.73926 * 15 14 13 26 26 C 1.37591 * 120.10059 * 0.02562 * 25 15 14 27 27 H 1.09001 * 109.47233 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47391 * 299.99755 * 1 2 3 29 29 H 1.09004 * 109.46857 * 59.99646 * 1 2 3 30 30 H 1.09001 * 109.46699 * 240.00425 * 2 1 3 31 31 H 1.08991 * 109.47155 * 120.00557 * 2 1 3 32 32 H 1.09003 * 109.47199 * 30.00628 * 4 3 2 33 33 H 1.09002 * 109.46860 * 150.00365 * 4 3 2 34 34 H 1.09002 * 109.47162 * 185.00371 * 5 4 3 35 35 H 1.09004 * 109.46992 * 304.99955 * 5 4 3 36 36 H 1.09002 * 109.46648 * 60.00722 * 7 6 5 37 37 H 1.09004 * 109.46538 * 180.02562 * 7 6 5 38 38 H 1.08997 * 109.47277 * 300.00700 * 7 6 5 39 39 H 1.07997 * 119.99741 * 0.28440 * 10 8 3 40 40 H 1.07997 * 119.99788 * 359.97438 * 11 10 8 41 41 H 1.07994 * 120.04843 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.94376 * 180.23584 * 14 13 12 43 43 H 0.97000 * 120.00320 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.94866 * 180.02562 * 25 15 14 45 45 H 1.07998 * 120.05327 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7075 1.8315 -1.7104 6 8 3.8944 0.4434 -1.9935 7 6 5.2176 0.1097 -2.4175 8 6 2.2430 2.0164 1.1672 9 8 2.6492 3.1640 1.1674 10 6 1.9988 1.3271 2.4338 11 6 2.2235 1.9637 3.6032 12 6 1.9786 1.2708 4.8758 13 6 1.5067 -0.0476 4.8782 14 6 1.2831 -0.6938 6.0723 15 6 1.5153 -0.0356 7.2763 16 8 1.2890 -0.6747 8.4504 17 6 1.6417 -0.0260 9.5780 18 1 2.0068 0.9891 9.5254 19 6 1.5358 -0.6622 10.8061 20 7 1.0909 -1.8981 10.8703 21 14 2.0252 0.2365 12.3689 22 1 2.4907 1.6048 12.0279 23 1 0.8538 0.3236 13.2774 24 1 3.1209 -0.5048 13.0437 25 6 1.9797 1.2764 7.2789 26 6 2.2107 1.9290 6.0898 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.5816 1.6879 -2.0283 33 1 2.0955 3.1411 -1.1382 34 1 3.9156 2.4164 -2.6063 35 1 4.3863 2.1342 -0.9131 36 1 5.9279 0.3768 -1.6351 37 1 5.2773 -0.9610 -2.6129 38 1 5.4566 0.6588 -3.3282 39 1 1.6429 0.3075 2.4338 40 1 2.5838 2.9818 3.6032 41 1 1.3222 -0.5576 3.9444 42 1 0.9227 -1.7119 6.0751 43 1 1.0172 -2.3431 11.7290 44 1 2.1589 1.7831 8.2157 45 1 2.5714 2.9469 6.0927 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298394269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:54 Heat of formation + Delta-G solvation = -85.416872 kcal Electronic energy + Delta-G solvation = -25627.205818 eV Core-core repulsion = 21803.437571 eV Total energy + Delta-G solvation = -3823.768247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.10198 -40.75134 -38.83902 -38.45076 -36.86077 -34.78658 -34.05285 -32.42669 -31.96688 -30.46107 -29.37799 -27.55508 -27.15700 -25.23225 -24.21564 -23.82538 -23.22252 -21.44772 -20.11116 -19.30829 -18.83231 -18.47013 -17.61218 -17.20926 -16.70800 -16.44390 -16.30842 -16.14588 -15.92148 -15.61267 -15.44381 -15.21290 -14.77098 -14.67454 -14.56697 -14.10925 -13.80759 -13.60684 -13.44177 -13.29170 -13.20363 -12.97803 -12.82054 -12.73047 -12.59932 -12.51077 -12.17447 -12.16365 -12.10526 -11.85196 -11.21049 -11.12003 -10.90645 -10.60887 -10.56853 -9.89471 -9.67232 -8.67590 -8.52239 -6.18180 -0.25412 0.58352 1.12704 1.35965 1.45065 1.53851 2.07741 2.15141 2.34821 2.84295 2.87156 3.17713 3.42021 3.62304 3.92686 4.04946 4.07574 4.08205 4.20644 4.26285 4.31917 4.39002 4.44477 4.47433 4.52862 4.54678 4.60493 4.68202 4.71712 4.82188 4.86749 4.94057 4.99973 5.01211 5.06257 5.19597 5.26150 5.33096 5.42253 5.55801 5.63309 5.68188 5.81165 5.97551 6.10031 6.16500 6.45045 6.92259 7.21220 7.69412 8.70034 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.025657 B = 0.002101 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.070553 B =13321.516493 C =13526.094017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.104 3.896 3 N -0.601 5.601 4 C 0.116 3.884 5 C 0.049 3.951 6 O -0.402 6.402 7 C 0.027 3.973 8 C 0.548 3.452 9 O -0.594 6.594 10 C -0.249 4.249 11 C 0.016 3.984 12 C -0.170 4.170 13 C -0.037 4.037 14 C -0.205 4.205 15 C 0.131 3.869 16 O -0.219 6.219 17 C -0.416 4.416 18 H 0.106 0.894 19 C -0.019 4.019 20 N -0.913 5.913 21 Si 1.019 2.981 22 H -0.251 1.251 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.248 4.248 26 C -0.040 4.040 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.032 0.968 36 H 0.035 0.965 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.148 0.852 40 H 0.124 0.876 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.275 0.725 44 H 0.125 0.875 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.370 4.797 -25.263 25.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.331 5.331 4 C -0.007 4.007 5 C -0.029 4.029 6 O -0.322 6.322 7 C -0.069 4.069 8 C 0.341 3.659 9 O -0.478 6.478 10 C -0.269 4.269 11 C -0.004 4.004 12 C -0.171 4.171 13 C -0.055 4.055 14 C -0.225 4.225 15 C 0.078 3.922 16 O -0.124 6.124 17 C -0.491 4.491 18 H 0.123 0.877 19 C -0.218 4.218 20 N -0.550 5.550 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.267 4.267 26 C -0.058 4.058 27 H 0.102 0.898 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.165 0.835 40 H 0.142 0.858 41 H 0.174 0.826 42 H 0.142 0.858 43 H 0.084 0.916 44 H 0.143 0.857 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.279 4.838 -25.079 25.751 hybrid contribution 0.419 0.312 1.044 1.168 sum 3.698 5.150 -24.034 24.856 Atomic orbital electron populations 1.22197 0.95047 1.03297 1.02086 1.21787 0.94699 0.80792 1.04488 1.47851 1.64951 1.15261 1.05059 1.21593 0.95291 0.98555 0.85213 1.22960 0.97386 0.82988 0.99551 1.87819 1.31316 1.25083 1.87958 1.22869 0.83061 1.02389 0.98547 1.18564 0.76616 0.85408 0.85295 1.90750 1.49106 1.19575 1.88363 1.22858 1.10695 1.02332 0.91016 1.22183 0.89562 0.98209 0.90438 1.18773 1.10301 0.95460 0.92564 1.21246 0.94070 0.93226 0.96971 1.20409 1.10706 1.01297 0.90042 1.20174 0.92515 0.92122 0.87350 1.83886 1.72104 1.44154 1.12275 1.21933 1.45321 0.99342 0.82533 0.87713 1.26611 0.96209 0.96790 1.02191 1.70152 1.44254 1.13134 1.27498 0.84524 0.78347 0.78279 0.75058 1.17426 1.19300 1.19322 1.21197 1.10484 0.95371 0.99688 1.21305 0.94471 0.99444 0.90563 0.89826 0.93341 0.92195 0.88574 0.89869 0.87590 0.89201 0.90461 0.95000 0.94664 0.88395 0.92869 0.83479 0.85767 0.82604 0.85848 0.91592 0.85731 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 71.98 0.74 -1.46 16 2 C 0.10 1.56 5.66 86.38 0.49 2.05 16 3 N -0.60 -12.01 2.44 -827.01 -2.01 -14.02 16 4 C 0.12 1.93 5.81 86.38 0.50 2.44 16 5 C 0.05 0.80 6.28 71.98 0.45 1.25 16 6 O -0.40 -6.74 9.53 -148.98 -1.42 -8.16 16 7 C 0.03 0.33 11.01 113.37 1.25 1.58 16 8 C 0.55 14.52 7.60 86.33 0.66 15.17 16 9 O -0.59 -19.69 15.81 -4.44 -0.07 -19.76 16 10 C -0.25 -6.18 8.61 23.61 0.20 -5.98 16 11 C 0.02 0.45 9.45 23.82 0.23 0.67 16 12 C -0.17 -5.41 5.87 -20.12 -0.12 -5.53 16 13 C -0.04 -1.19 9.40 22.55 0.21 -0.98 16 14 C -0.21 -8.23 9.97 22.34 0.22 -8.01 16 15 C 0.13 6.23 6.66 22.72 0.15 6.39 16 16 O -0.22 -12.70 9.74 -20.30 -0.20 -12.90 16 17 C -0.42 -23.40 9.48 67.93 0.64 -22.76 16 18 H 0.11 5.41 5.18 -2.91 -0.02 5.39 16 19 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 20 N -0.91 -54.39 13.67 21.62 0.30 -54.10 16 21 Si 1.02 41.60 29.55 68.60 2.03 43.62 16 22 H -0.25 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 C -0.25 -10.47 9.14 22.34 0.20 -10.26 16 26 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.10 1.31 7.12 -2.39 -0.02 1.29 16 31 H 0.08 1.22 6.09 -2.39 -0.01 1.21 16 32 H 0.11 1.28 8.07 -2.39 -0.02 1.26 16 33 H 0.09 1.66 7.42 -2.39 -0.02 1.64 16 34 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.15 2.99 4.21 -2.91 -0.01 2.98 16 40 H 0.12 3.51 7.52 -2.91 -0.02 3.49 16 41 H 0.16 3.70 6.16 -2.91 -0.02 3.68 16 42 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.13 5.31 5.62 -2.91 -0.02 5.29 16 45 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -72.23 379.47 6.13 -66.10 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 1.00 Total: 26.39 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 6.52 Total: -27.17 kcal Atomic # 7 Polarization: -66.40 SS G_CDS: -1.72 Total: -68.12 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -1.69 Total: -40.82 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -72.23 6.13 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298394269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.319 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds