Wall clock time and date at job start Tue Mar 31 2020 12:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47238 * 2 1 4 4 C 1.42898 * 113.99734 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.46746 * 179.97438 * 4 3 2 6 6 H 1.09005 * 110.88715 * 57.42802 * 5 4 3 7 7 C 1.55153 * 111.00511 * 293.54594 * 5 4 3 8 8 C 1.54329 * 102.94204 * 206.42325 * 7 5 4 9 9 N 1.47026 * 107.26752 * 22.19368 * 8 7 5 10 10 S 1.65603 * 125.64329 * 181.02577 * 9 8 7 11 11 O 1.42097 * 104.27687 * 333.94866 * 10 9 8 12 12 O 1.42099 * 104.27289 * 206.09262 * 10 9 8 13 13 C 1.81390 * 104.45114 * 90.02215 * 10 9 8 14 14 C 1.53008 * 109.47031 * 179.97438 * 13 10 9 15 15 C 1.53000 * 109.46917 * 299.99676 * 14 13 10 16 16 C 1.52996 * 109.46989 * 60.00069 * 14 13 10 17 17 C 1.50700 * 109.47168 * 179.97438 * 14 13 10 18 18 H 1.08003 * 119.99824 * 357.69586 * 17 14 13 19 19 C 1.37869 * 120.00052 * 177.69228 * 17 14 13 20 20 N 1.31514 * 120.00319 * 6.58753 * 19 17 14 21 21 Si 1.86810 * 120.00084 * 186.58026 * 19 17 14 22 22 H 1.48498 * 109.46720 * 84.99686 * 21 19 17 23 23 H 1.48501 * 109.47011 * 204.99763 * 21 19 17 24 24 H 1.48500 * 109.46968 * 324.99908 * 21 19 17 25 25 C 1.47415 * 108.70448 * 1.28375 * 9 8 7 26 26 H 1.09001 * 109.47249 * 59.99902 * 1 2 3 27 27 H 1.08999 * 109.47304 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47329 * 300.00074 * 1 2 3 29 29 H 1.09002 * 109.47329 * 239.99926 * 2 1 3 30 30 H 1.08998 * 109.46800 * 119.99847 * 2 1 3 31 31 H 1.08996 * 109.47366 * 60.00008 * 4 3 2 32 32 H 1.09003 * 109.47272 * 299.99247 * 4 3 2 33 33 H 1.08997 * 110.72002 * 88.06282 * 7 5 4 34 34 H 1.09002 * 110.71728 * 324.78615 * 7 5 4 35 35 H 1.08993 * 109.88089 * 262.77650 * 8 7 5 36 36 H 1.08999 * 110.00915 * 141.68246 * 8 7 5 37 37 H 1.09004 * 109.47306 * 299.99416 * 13 10 9 38 38 H 1.08997 * 109.47519 * 59.99634 * 13 10 9 39 39 H 1.08999 * 109.46687 * 66.67016 * 15 14 13 40 40 H 1.08996 * 109.46928 * 186.66952 * 15 14 13 41 41 H 1.08997 * 109.47375 * 306.67098 * 15 14 13 42 42 H 1.09005 * 109.47431 * 59.99780 * 16 14 13 43 43 H 1.09006 * 109.46715 * 180.02562 * 16 14 13 44 44 H 1.09007 * 109.47274 * 299.99960 * 16 14 13 45 45 H 0.96997 * 120.00484 * 180.02562 * 20 19 17 46 46 H 1.09002 * 110.36805 * 94.48296 * 25 9 8 47 47 H 1.08998 * 110.36923 * 216.80616 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.8254 2.9383 -0.0012 6 1 3.3962 3.4554 0.8571 7 6 3.4092 3.6245 -1.3291 8 6 4.4200 4.7844 -1.4504 9 7 5.5904 4.4305 -0.6339 10 16 6.9385 5.3687 -0.4219 11 8 6.9911 6.1756 -1.5904 12 8 7.9706 4.4374 -0.1276 13 6 6.5606 6.3815 1.0346 14 6 7.7448 7.3022 1.3367 15 6 8.9903 6.4574 1.6122 16 6 8.0020 8.2133 0.1348 17 6 7.4307 8.1442 2.5464 18 1 6.4672 8.0604 3.0272 19 6 8.3732 9.0213 3.0395 20 7 9.4948 9.2194 2.3819 21 14 8.0572 9.9286 4.6416 22 1 8.4641 9.0718 5.7841 23 1 8.8450 11.1873 4.6613 24 1 6.6111 10.2479 4.7526 25 6 5.3678 3.0997 -0.0402 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8333 0.9766 -0.8908 32 1 3.8340 0.9764 0.8892 33 1 2.3904 4.0062 -1.2631 34 1 3.5106 2.9353 -2.1675 35 1 3.9731 5.7060 -1.0778 36 1 4.7186 4.9115 -2.4909 37 1 5.6730 6.9831 0.8386 38 1 6.3778 5.7326 1.8910 39 1 9.2866 5.9390 0.7002 40 1 9.8026 7.1048 1.9424 41 1 8.7690 5.7266 2.3899 42 1 7.1146 8.8151 -0.0615 43 1 8.8459 8.8689 0.3498 44 1 8.2290 7.6046 -0.7406 45 1 10.1581 9.8362 2.7289 46 1 5.8167 2.3263 -0.6636 47 1 5.7785 3.0607 0.9686 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331337753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:59 Heat of formation + Delta-G solvation = -146.118374 kcal Electronic energy + Delta-G solvation = -26157.815477 eV Core-core repulsion = 22466.858967 eV Total energy + Delta-G solvation = -3690.956510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.97143 -38.40507 -38.15543 -38.12664 -36.91752 -33.65980 -33.31251 -31.44352 -30.33862 -28.36515 -27.71793 -27.26443 -26.14752 -23.67112 -23.18612 -21.42926 -21.26154 -19.86835 -18.84530 -17.92761 -17.87669 -17.17425 -16.98356 -16.81115 -16.68498 -16.26213 -15.38876 -14.94473 -14.87617 -14.77913 -14.45473 -14.41931 -14.22346 -14.13296 -13.80900 -13.37295 -13.22290 -13.16584 -13.07068 -12.88747 -12.81590 -12.54683 -12.51863 -12.44062 -12.24847 -12.14868 -12.10344 -12.00743 -11.97163 -11.63019 -11.59499 -11.53329 -11.39350 -10.70114 -10.46232 -10.40708 -9.91727 -8.04728 -6.23053 -0.69343 1.43967 1.45405 1.53656 1.77677 2.43483 2.68484 2.88463 3.14987 3.18712 3.51416 3.74832 3.96668 4.02072 4.14984 4.23009 4.30711 4.36105 4.40983 4.46029 4.49540 4.56943 4.57376 4.63970 4.74797 4.83135 4.83320 4.90172 4.92484 4.95912 5.00248 5.05106 5.08982 5.10344 5.16687 5.32255 5.35727 5.38508 5.43055 5.51111 5.63144 5.95094 6.09566 6.32978 6.33664 6.81231 7.44994 8.95095 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.019394 B = 0.003120 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.422173 B = 8970.804365 C = 9746.290471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.405 6.405 4 C 0.074 3.926 5 C -0.094 4.094 6 H 0.095 0.905 7 C -0.107 4.107 8 C 0.106 3.894 9 N -1.018 6.018 10 S 2.627 3.373 11 O -0.987 6.987 12 O -0.985 6.985 13 C -0.585 4.585 14 C 0.069 3.931 15 C -0.157 4.157 16 C -0.160 4.160 17 C -0.518 4.518 18 H 0.062 0.938 19 C 0.018 3.982 20 N -0.907 5.907 21 Si 0.955 3.045 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.268 1.268 25 C 0.119 3.881 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.028 0.972 40 H 0.071 0.929 41 H 0.043 0.957 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.030 0.970 45 H 0.262 0.738 46 H 0.078 0.922 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.461 -17.460 -4.787 24.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.325 6.325 4 C -0.003 4.003 5 C -0.114 4.114 6 H 0.113 0.887 7 C -0.146 4.146 8 C -0.019 4.019 9 N -0.857 5.857 10 S 2.726 3.274 11 O -0.977 6.977 12 O -0.976 6.976 13 C -0.717 4.717 14 C 0.067 3.933 15 C -0.215 4.215 16 C -0.218 4.218 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.182 4.182 20 N -0.545 5.545 21 Si 0.781 3.219 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.193 1.193 25 C -0.006 4.006 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.566 -17.187 -5.359 23.800 hybrid contribution 0.118 0.805 1.273 1.511 sum -15.448 -16.383 -4.086 22.885 Atomic orbital electron populations 1.21761 0.93226 1.03165 1.02618 1.22628 0.96095 0.83033 1.00845 1.87849 1.21332 1.27735 1.95609 1.22390 0.81230 0.95152 1.01566 1.22351 0.93442 0.95777 0.99822 0.88710 1.22600 0.98729 0.95959 0.97291 1.21990 0.85187 0.99657 0.95038 1.58568 1.35181 1.29594 1.62372 1.04424 0.72502 0.73843 0.76599 1.93489 1.85945 1.70920 1.47389 1.93499 1.55067 1.62295 1.86706 1.30511 1.09278 1.13094 1.18834 1.17934 0.88664 0.91412 0.95309 1.22142 1.01430 0.98656 0.99249 1.22245 1.02566 1.01273 0.95716 1.21267 1.00701 1.21896 1.11869 0.91942 1.25684 0.95162 0.97277 1.00038 1.69947 1.09057 1.36556 1.38971 0.85623 0.78285 0.77788 0.80240 1.20150 1.21277 1.19269 1.22133 0.96093 0.83384 0.98973 0.92279 0.89465 0.92496 0.92548 0.92726 0.91912 0.91887 0.88593 0.89775 0.90858 0.91465 0.84891 0.84643 0.95305 0.91059 0.93807 0.94258 0.90734 0.95115 0.92843 0.90373 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.05 0.60 6.66 71.98 0.48 1.08 16 3 O -0.41 -6.78 10.20 -148.98 -1.52 -8.30 16 4 C 0.07 1.07 5.38 71.98 0.39 1.45 16 5 C -0.09 -1.62 3.34 -9.32 -0.03 -1.65 16 6 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 7 C -0.11 -1.81 6.28 31.78 0.20 -1.61 16 8 C 0.11 2.42 6.89 86.73 0.60 3.02 16 9 N -1.02 -28.27 3.62 -506.03 -1.83 -30.10 16 10 S 2.63 98.57 4.68 -56.49 -0.26 98.31 16 11 O -0.99 -42.26 15.22 -127.65 -1.94 -44.21 16 12 O -0.99 -41.48 15.36 -127.65 -1.96 -43.44 16 13 C -0.58 -22.62 5.11 71.98 0.37 -22.25 16 14 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 15 C -0.16 -7.84 7.58 71.98 0.55 -7.30 16 16 C -0.16 -8.11 7.79 71.98 0.56 -7.55 16 17 C -0.52 -27.19 8.01 25.60 0.20 -26.99 16 18 H 0.06 3.15 7.75 -2.91 -0.02 3.13 16 19 C 0.02 0.95 5.09 84.65 0.43 1.38 16 20 N -0.91 -50.47 9.39 21.44 0.20 -50.27 16 21 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 C 0.12 2.60 6.36 86.93 0.55 3.15 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.79 8.11 -2.39 -0.02 0.77 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.27 8.01 -2.39 -0.02 1.25 16 35 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.13 4.66 8.14 -2.39 -0.02 4.64 16 38 H 0.14 4.66 8.14 -2.39 -0.02 4.64 16 39 H 0.03 1.38 5.96 -2.39 -0.01 1.36 16 40 H 0.07 3.88 5.99 -2.39 -0.01 3.86 16 41 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.07 4.11 6.01 -2.38 -0.01 4.09 16 44 H 0.03 1.48 5.47 -2.38 -0.01 1.47 16 45 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 46 H 0.08 1.57 8.04 -2.39 -0.02 1.55 16 47 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -67.68 374.40 0.64 -67.04 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.92 Total: 21.45 kcal Atomic # 6 Polarization: -59.73 SS G_CDS: 5.01 Total: -54.72 kcal Atomic # 7 Polarization: -78.74 SS G_CDS: -1.63 Total: -80.37 kcal Atomic # 8 Polarization: -90.53 SS G_CDS: -5.42 Total: -95.95 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: 98.57 SS G_CDS: -0.26 Total: 98.31 kcal Total: -67.68 0.64 -67.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331337753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.083 kcal (2) G-P(sol) polarization free energy of solvation -67.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds