Wall clock time and date at job start Tue Mar 31 2020 12:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47520 * 2 1 4 4 C 1.42901 * 114.00313 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47098 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.65036 * 303.31505 * 5 4 3 7 7 C 1.55163 * 110.72104 * 66.45926 * 5 4 3 8 8 C 1.54911 * 101.58415 * 154.04091 * 7 5 4 9 9 N 1.47427 * 104.83032 * 322.99041 * 8 7 5 10 10 S 1.65600 * 125.64289 * 204.08965 * 9 8 7 11 11 O 1.42091 * 104.27901 * 333.95457 * 10 9 8 12 12 O 1.42099 * 104.27321 * 206.09679 * 10 9 8 13 13 C 1.81401 * 104.44749 * 90.02723 * 10 9 8 14 14 C 1.53000 * 109.47369 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47046 * 300.00253 * 14 13 10 16 16 C 1.53003 * 109.46781 * 59.99620 * 14 13 10 17 17 C 1.50698 * 109.47300 * 179.97438 * 14 13 10 18 18 H 1.07992 * 120.00081 * 0.83762 * 17 14 13 19 19 C 1.37880 * 119.99752 * 180.83494 * 17 14 13 20 20 N 1.31508 * 119.99720 * 194.57471 * 19 17 14 21 21 Si 1.86803 * 120.00147 * 14.58523 * 19 17 14 22 22 H 1.48491 * 109.47151 * 84.44695 * 21 19 17 23 23 H 1.48497 * 109.47116 * 204.45071 * 21 19 17 24 24 H 1.48505 * 109.46659 * 324.44863 * 21 19 17 25 25 C 1.47018 * 108.70312 * 24.35608 * 9 8 7 26 26 H 1.09006 * 109.47098 * 300.00206 * 1 2 3 27 27 H 1.09003 * 109.47347 * 59.99619 * 1 2 3 28 28 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47098 * 239.99794 * 2 1 3 30 30 H 1.09003 * 109.47347 * 120.00381 * 2 1 3 31 31 H 1.09003 * 109.46760 * 60.00180 * 4 3 2 32 32 H 1.08999 * 109.47361 * 300.00288 * 4 3 2 33 33 H 1.09001 * 111.00242 * 35.96457 * 7 5 4 34 34 H 1.09004 * 111.00205 * 272.11644 * 7 5 4 35 35 H 1.08992 * 110.36514 * 204.14889 * 8 7 5 36 36 H 1.09004 * 110.45919 * 81.87352 * 8 7 5 37 37 H 1.09008 * 109.47187 * 59.99563 * 13 10 9 38 38 H 1.08994 * 109.47438 * 299.99748 * 13 10 9 39 39 H 1.09000 * 109.46623 * 190.22837 * 15 14 13 40 40 H 1.08999 * 109.47289 * 70.23179 * 15 14 13 41 41 H 1.09001 * 109.47078 * 310.22612 * 15 14 13 42 42 H 1.08994 * 109.47517 * 300.00447 * 16 14 13 43 43 H 1.09002 * 109.46852 * 60.00626 * 16 14 13 44 44 H 1.09001 * 109.46922 * 179.97438 * 16 14 13 45 45 H 0.97008 * 120.00166 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.88153 * 118.12897 * 25 9 8 47 47 H 1.09002 * 109.88466 * 239.29601 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9382 -0.0001 6 1 3.3837 3.4536 -0.8530 7 6 3.4063 3.6189 1.3298 8 6 4.4262 4.7816 1.4190 9 7 5.6831 4.2225 0.8889 10 16 7.2061 4.7713 1.2376 11 8 7.0171 6.1384 1.5758 12 8 7.9809 4.3967 0.1068 13 6 7.7077 3.8179 2.6971 14 6 9.1162 4.2383 3.1217 15 6 10.0952 3.9710 1.9766 16 6 9.1226 5.7304 3.4602 17 6 9.5326 3.4467 4.3345 18 1 8.8654 2.7072 4.7518 19 6 10.7654 3.6667 4.9113 20 7 11.2512 2.8016 5.7745 21 14 11.7456 5.1936 4.4669 22 1 11.2952 6.3326 5.3065 23 1 13.1893 4.9423 4.7068 24 1 11.5312 5.5196 3.0341 25 6 5.3601 3.1012 -0.0054 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8340 0.9763 -0.8892 32 1 3.8333 0.9766 0.8908 33 1 3.5189 2.9350 2.1711 34 1 2.3860 3.9979 1.2701 35 1 4.5567 5.0929 2.4553 36 1 4.0985 5.6235 0.8091 37 1 7.7034 2.7549 2.4557 38 1 7.0101 4.0080 3.5126 39 1 11.1167 4.0971 2.3352 40 1 9.9057 4.6735 1.1651 41 1 9.9605 2.9519 1.6140 42 1 8.8212 6.3033 2.5833 43 1 8.4252 5.9209 4.2759 44 1 10.1259 6.0299 3.7631 45 1 12.1185 2.9565 6.1806 46 1 5.7081 3.3201 -1.0150 47 1 5.8292 2.1879 0.3607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331337754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:02 Heat of formation + Delta-G solvation = -105.876603 kcal Electronic energy + Delta-G solvation = -26314.509031 eV Core-core repulsion = 22625.297536 eV Total energy + Delta-G solvation = -3689.211496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.21376 -37.67575 -36.74571 -36.70567 -35.47988 -32.60223 -31.95848 -30.76628 -29.51993 -27.44767 -26.39214 -25.39260 -25.01861 -23.12186 -22.37902 -20.60131 -19.72373 -18.63495 -17.56165 -17.24275 -16.40390 -16.18986 -16.01664 -15.59602 -15.44775 -15.08303 -14.42128 -14.15996 -13.80056 -13.44581 -13.38972 -13.14276 -13.04226 -12.89496 -12.77716 -12.52936 -12.45924 -12.19653 -11.85309 -11.65112 -11.58152 -11.57484 -11.36141 -11.29615 -11.08577 -11.01001 -10.92546 -10.84291 -10.78162 -10.18191 -10.07044 -10.01465 -9.87007 -9.16557 -8.89172 -8.71967 -8.47367 -6.20774 -4.18117 0.63299 2.93636 3.24548 3.31746 3.33848 3.37917 4.19665 4.26328 4.33032 4.39058 4.55201 4.69642 4.71899 4.89690 5.03569 5.07365 5.09440 5.10670 5.19152 5.30044 5.31009 5.37600 5.43115 5.49200 5.51373 5.57129 5.70926 5.77128 5.80488 5.85365 5.97724 6.02382 6.10938 6.23092 6.30786 6.38502 6.43860 6.48162 6.70551 6.86050 6.90855 7.11849 7.30019 7.61159 8.37536 8.81948 9.43272 10.91780 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.003259 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.213169 B = 8589.010098 C = 9220.149616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.071 3.929 5 C -0.096 4.096 6 H 0.092 0.908 7 C -0.120 4.120 8 C 0.119 3.881 9 N -1.020 6.020 10 S 2.605 3.395 11 O -0.958 6.958 12 O -0.958 6.958 13 C -0.574 4.574 14 C 0.054 3.946 15 C -0.170 4.170 16 C -0.181 4.181 17 C -0.508 4.508 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.889 5.889 21 Si 0.874 3.126 22 H -0.280 1.280 23 H -0.301 1.301 24 H -0.246 1.246 25 C 0.128 3.872 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.067 0.933 40 H 0.037 0.963 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.266 0.734 46 H 0.075 0.925 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.895 -3.199 -11.392 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.307 6.307 4 C -0.006 4.006 5 C -0.116 4.116 6 H 0.110 0.890 7 C -0.159 4.159 8 C -0.006 4.006 9 N -0.856 5.856 10 S 2.704 3.296 11 O -0.949 6.949 12 O -0.949 6.949 13 C -0.707 4.707 14 C 0.051 3.949 15 C -0.228 4.228 16 C -0.238 4.238 17 C -0.547 4.547 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.525 5.525 21 Si 0.705 3.295 22 H -0.208 1.208 23 H -0.229 1.229 24 H -0.172 1.172 25 C 0.002 3.998 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.086 0.914 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.346 -2.387 -11.772 21.928 hybrid contribution 0.665 -0.019 0.496 0.830 sum -17.681 -2.406 -11.276 21.108 Atomic orbital electron populations 1.21740 0.93779 1.02199 1.03120 1.22456 0.95549 0.83831 1.00158 1.87863 1.20982 1.26358 1.95466 1.22467 0.81370 0.96062 1.00717 1.22180 0.94676 0.94911 0.99860 0.88970 1.22811 0.99057 0.97078 0.96950 1.21987 0.83146 0.96176 0.99284 1.58876 1.22050 1.45410 1.59301 1.05387 0.71352 0.75519 0.77322 1.93542 1.84192 1.31384 1.85777 1.93548 1.68053 1.84553 1.48749 1.30420 1.08748 1.13922 1.17608 1.18240 0.86917 0.93079 0.96645 1.22681 1.01890 1.01095 0.97118 1.22820 1.01819 0.97449 1.01737 1.20647 1.02259 1.21295 1.10461 0.90411 1.24964 0.96775 0.96083 0.94775 1.69934 1.18595 1.34066 1.29935 0.87441 0.77985 0.83922 0.80130 1.20774 1.22885 1.17179 1.21558 0.94466 0.89216 0.94544 0.91809 0.91919 0.91176 0.93451 0.93313 0.92892 0.92656 0.90417 0.89680 0.90486 0.91328 0.85681 0.85729 0.91420 0.94441 0.92350 0.93254 0.91763 0.92987 0.92399 0.90683 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.15 0.38 -0.53 16 2 C 0.06 0.41 6.66 37.15 0.25 0.66 16 3 O -0.39 -3.63 10.19 -35.23 -0.36 -3.99 16 4 C 0.07 0.60 5.24 37.16 0.19 0.80 16 5 C -0.10 -0.89 3.21 -88.78 -0.29 -1.18 16 6 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.12 -1.11 6.39 -24.58 -0.16 -1.27 16 8 C 0.12 1.36 6.89 -2.53 -0.02 1.34 16 9 N -1.02 -13.92 3.62 -111.41 -0.40 -14.32 16 10 S 2.60 46.09 4.69 -107.50 -0.50 45.59 16 11 O -0.96 -18.98 15.23 -57.54 -0.88 -19.85 16 12 O -0.96 -18.97 15.44 -57.54 -0.89 -19.85 16 13 C -0.57 -10.64 5.10 37.16 0.19 -10.45 16 14 C 0.05 1.24 0.52 -155.66 -0.08 1.16 16 15 C -0.17 -3.86 6.95 37.16 0.26 -3.60 16 16 C -0.18 -4.11 7.22 37.16 0.27 -3.84 16 17 C -0.51 -13.70 8.62 -34.44 -0.30 -13.99 16 18 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 19 C 0.08 2.17 5.31 -17.82 -0.09 2.08 16 20 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 21 Si 0.87 21.60 22.79 -169.99 -3.87 17.72 16 22 H -0.28 -6.84 7.10 56.52 0.40 -6.44 16 23 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 24 H -0.25 -5.70 4.67 56.52 0.26 -5.44 16 25 C 0.13 1.44 6.50 -3.06 -0.02 1.42 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 33 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 38 H 0.12 2.10 8.14 -51.93 -0.42 1.67 16 39 H 0.07 1.58 4.32 -51.93 -0.22 1.35 16 40 H 0.04 0.80 6.21 -51.93 -0.32 0.47 16 41 H 0.06 1.24 8.11 -51.93 -0.42 0.82 16 42 H 0.05 1.05 5.46 -51.93 -0.28 0.77 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.05 1.21 2.28 -51.93 -0.12 1.09 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 0.69 7.83 -51.93 -0.41 0.28 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -33.20 364.30 -8.28 -41.48 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -8.22 Total: 0.84 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: 0.59 Total: -27.41 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.37 Total: -40.01 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -2.12 Total: -43.70 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -3.87 Total: 17.72 kcal Atomic # 16 Polarization: 46.09 SS G_CDS: -0.50 Total: 45.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.20 -8.28 -41.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331337754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.400 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds