Wall clock time and date at job start Tue Mar 31 2020 12:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42896 * 109.47520 * 2 1 4 4 C 1.42901 * 114.00313 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47098 * 179.97438 * 4 3 2 6 6 H 1.09003 * 110.65036 * 303.31505 * 5 4 3 7 7 C 1.55163 * 110.72104 * 66.45926 * 5 4 3 8 8 C 1.54911 * 101.58415 * 154.04091 * 7 5 4 9 9 N 1.47427 * 104.83032 * 322.99041 * 8 7 5 10 10 S 1.65600 * 125.64289 * 204.08965 * 9 8 7 11 11 O 1.42091 * 104.27901 * 333.95457 * 10 9 8 12 12 O 1.42099 * 104.27321 * 206.09679 * 10 9 8 13 13 C 1.81401 * 104.44749 * 90.02723 * 10 9 8 14 14 C 1.53000 * 109.47369 * 179.97438 * 13 10 9 15 15 C 1.53004 * 109.47046 * 300.00253 * 14 13 10 16 16 C 1.53003 * 109.46781 * 59.99620 * 14 13 10 17 17 C 1.50698 * 109.47300 * 179.97438 * 14 13 10 18 18 H 1.07992 * 120.00081 * 0.83762 * 17 14 13 19 19 C 1.37880 * 119.99752 * 180.83494 * 17 14 13 20 20 N 1.31508 * 119.99720 * 194.57471 * 19 17 14 21 21 Si 1.86803 * 120.00147 * 14.58523 * 19 17 14 22 22 H 1.48491 * 109.47151 * 84.44695 * 21 19 17 23 23 H 1.48497 * 109.47116 * 204.45071 * 21 19 17 24 24 H 1.48505 * 109.46659 * 324.44863 * 21 19 17 25 25 C 1.47018 * 108.70312 * 24.35608 * 9 8 7 26 26 H 1.09006 * 109.47098 * 300.00206 * 1 2 3 27 27 H 1.09003 * 109.47347 * 59.99619 * 1 2 3 28 28 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47098 * 239.99794 * 2 1 3 30 30 H 1.09003 * 109.47347 * 120.00381 * 2 1 3 31 31 H 1.09003 * 109.46760 * 60.00180 * 4 3 2 32 32 H 1.08999 * 109.47361 * 300.00288 * 4 3 2 33 33 H 1.09001 * 111.00242 * 35.96457 * 7 5 4 34 34 H 1.09004 * 111.00205 * 272.11644 * 7 5 4 35 35 H 1.08992 * 110.36514 * 204.14889 * 8 7 5 36 36 H 1.09004 * 110.45919 * 81.87352 * 8 7 5 37 37 H 1.09008 * 109.47187 * 59.99563 * 13 10 9 38 38 H 1.08994 * 109.47438 * 299.99748 * 13 10 9 39 39 H 1.09000 * 109.46623 * 190.22837 * 15 14 13 40 40 H 1.08999 * 109.47289 * 70.23179 * 15 14 13 41 41 H 1.09001 * 109.47078 * 310.22612 * 15 14 13 42 42 H 1.08994 * 109.47517 * 300.00447 * 16 14 13 43 43 H 1.09002 * 109.46852 * 60.00626 * 16 14 13 44 44 H 1.09001 * 109.46922 * 179.97438 * 16 14 13 45 45 H 0.97008 * 120.00166 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.88153 * 118.12897 * 25 9 8 47 47 H 1.09002 * 109.88466 * 239.29601 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8254 2.9382 -0.0001 6 1 3.3837 3.4536 -0.8530 7 6 3.4063 3.6189 1.3298 8 6 4.4262 4.7816 1.4190 9 7 5.6831 4.2225 0.8889 10 16 7.2061 4.7713 1.2376 11 8 7.0171 6.1384 1.5758 12 8 7.9809 4.3967 0.1068 13 6 7.7077 3.8179 2.6971 14 6 9.1162 4.2383 3.1217 15 6 10.0952 3.9710 1.9766 16 6 9.1226 5.7304 3.4602 17 6 9.5326 3.4467 4.3345 18 1 8.8654 2.7072 4.7518 19 6 10.7654 3.6667 4.9113 20 7 11.2512 2.8016 5.7745 21 14 11.7456 5.1936 4.4669 22 1 11.2952 6.3326 5.3065 23 1 13.1893 4.9423 4.7068 24 1 11.5312 5.5196 3.0341 25 6 5.3601 3.1012 -0.0054 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8340 0.9763 -0.8892 32 1 3.8333 0.9766 0.8908 33 1 3.5189 2.9350 2.1711 34 1 2.3860 3.9979 1.2701 35 1 4.5567 5.0929 2.4553 36 1 4.0985 5.6235 0.8091 37 1 7.7034 2.7549 2.4557 38 1 7.0101 4.0080 3.5126 39 1 11.1167 4.0971 2.3352 40 1 9.9057 4.6735 1.1651 41 1 9.9605 2.9519 1.6140 42 1 8.8212 6.3033 2.5833 43 1 8.4252 5.9209 4.2759 44 1 10.1259 6.0299 3.7631 45 1 12.1185 2.9565 6.1806 46 1 5.7081 3.3201 -1.0150 47 1 5.8292 2.1879 0.3607 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331337754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:02 Heat of formation + Delta-G solvation = -129.579452 kcal Electronic energy + Delta-G solvation = -26315.536864 eV Core-core repulsion = 22625.297536 eV Total energy + Delta-G solvation = -3690.239329 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.99643 -38.55092 -38.36360 -38.19938 -36.97773 -34.06706 -33.33106 -31.44904 -30.34616 -29.02579 -28.17732 -27.11925 -26.14748 -23.68016 -23.26825 -21.51864 -21.36087 -19.90740 -18.91674 -18.15765 -17.97938 -17.33494 -17.08669 -16.97820 -16.87931 -16.23929 -15.36504 -15.21841 -14.99896 -14.86552 -14.80176 -14.64074 -14.28923 -14.19561 -13.95327 -13.89604 -13.33489 -13.25947 -13.23622 -13.11424 -12.80113 -12.73285 -12.61284 -12.52114 -12.42622 -12.12613 -12.07267 -12.00376 -11.88074 -11.83187 -11.61406 -11.54312 -10.99485 -10.70509 -10.52954 -10.47244 -9.92693 -8.36850 -6.36407 -0.75819 1.28771 1.33797 1.41651 1.70289 2.27852 2.67062 2.80031 2.97488 3.11837 3.52955 3.71980 3.74900 3.91308 4.04145 4.21869 4.21965 4.33018 4.34470 4.40021 4.46570 4.47290 4.55499 4.56379 4.58132 4.62908 4.66594 4.71961 4.73888 4.89176 4.90578 4.93631 5.03648 5.07100 5.09520 5.12327 5.16773 5.31752 5.34686 5.35360 5.46335 5.50558 5.60767 6.24387 6.31778 6.66364 7.27988 8.79043 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.003259 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.213169 B = 8589.010098 C = 9220.149616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.403 6.403 4 C 0.070 3.930 5 C -0.089 4.089 6 H 0.098 0.902 7 C -0.113 4.113 8 C 0.108 3.892 9 N -1.017 6.017 10 S 2.628 3.372 11 O -0.979 6.979 12 O -0.980 6.980 13 C -0.582 4.582 14 C 0.045 3.955 15 C -0.175 4.175 16 C -0.187 4.187 17 C -0.504 4.504 18 H 0.050 0.950 19 C 0.027 3.973 20 N -0.935 5.935 21 Si 0.916 3.084 22 H -0.275 1.275 23 H -0.304 1.304 24 H -0.222 1.222 25 C 0.117 3.883 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.044 0.956 45 H 0.267 0.733 46 H 0.075 0.925 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.521 -2.847 -12.847 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.323 6.323 4 C -0.006 4.006 5 C -0.109 4.109 6 H 0.116 0.884 7 C -0.152 4.152 8 C -0.016 4.016 9 N -0.856 5.856 10 S 2.727 3.273 11 O -0.970 6.970 12 O -0.970 6.970 13 C -0.714 4.714 14 C 0.042 3.958 15 C -0.232 4.232 16 C -0.244 4.244 17 C -0.543 4.543 18 H 0.068 0.932 19 C -0.172 4.172 20 N -0.574 5.574 21 Si 0.746 3.254 22 H -0.202 1.202 23 H -0.233 1.233 24 H -0.146 1.146 25 C -0.008 4.008 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.155 0.845 38 H 0.156 0.844 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -19.977 -2.030 -13.233 24.048 hybrid contribution 1.027 -0.217 0.928 1.401 sum -18.950 -2.248 -12.305 22.706 Atomic orbital electron populations 1.21754 0.93070 1.03165 1.02692 1.22627 0.96201 0.83070 1.00756 1.87832 1.21258 1.27640 1.95597 1.22469 0.81283 0.95491 1.01396 1.22117 0.93048 0.95656 1.00062 0.88407 1.22796 0.99083 0.96255 0.97035 1.22274 0.82509 0.97246 0.99612 1.58535 1.21352 1.46241 1.59479 1.04395 0.71898 0.74734 0.76309 1.93508 1.84869 1.32680 1.85939 1.93515 1.69595 1.84753 1.49180 1.30434 1.06519 1.15117 1.19288 1.18219 0.89580 0.92892 0.95103 1.22693 1.01167 1.02039 0.97344 1.22849 1.01642 0.97178 1.02693 1.20916 1.01431 1.20557 1.11381 0.93216 1.25666 0.98131 0.98433 0.94971 1.70049 1.19357 1.36055 1.31945 0.86719 0.76372 0.80923 0.81435 1.20182 1.23316 1.14629 1.21818 0.96164 0.88736 0.94095 0.92336 0.92205 0.89563 0.92616 0.92943 0.91840 0.92422 0.90205 0.88271 0.90112 0.90662 0.84471 0.84367 0.92420 0.93134 0.91641 0.91856 0.91080 0.93722 0.92424 0.90621 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 71.98 0.74 -0.81 16 2 C 0.05 0.62 6.66 71.98 0.48 1.10 16 3 O -0.40 -6.70 10.19 -148.98 -1.52 -8.22 16 4 C 0.07 1.03 5.24 71.98 0.38 1.41 16 5 C -0.09 -1.42 3.21 -9.60 -0.03 -1.45 16 6 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 7 C -0.11 -1.80 6.39 31.99 0.20 -1.59 16 8 C 0.11 2.20 6.89 86.86 0.60 2.80 16 9 N -1.02 -25.57 3.62 -506.40 -1.83 -27.40 16 10 S 2.63 87.98 4.69 -56.49 -0.26 87.72 16 11 O -0.98 -36.87 15.23 -127.65 -1.94 -38.81 16 12 O -0.98 -36.95 15.44 -127.65 -1.97 -38.93 16 13 C -0.58 -20.72 5.10 71.98 0.37 -20.35 16 14 C 0.04 2.00 0.52 -52.93 -0.03 1.97 16 15 C -0.18 -7.68 6.95 71.98 0.50 -7.18 16 16 C -0.19 -8.13 7.22 71.98 0.52 -7.61 16 17 C -0.50 -27.30 8.62 25.60 0.22 -27.08 16 18 H 0.05 2.90 7.99 -2.91 -0.02 2.88 16 19 C 0.03 1.52 5.31 84.66 0.45 1.97 16 20 N -0.94 -56.89 13.96 21.45 0.30 -56.59 16 21 Si 0.92 44.06 22.79 68.60 1.56 45.62 16 22 H -0.27 -12.87 7.10 99.48 0.71 -12.16 16 23 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 24 H -0.22 -9.75 4.67 99.48 0.46 -9.29 16 25 C 0.12 2.37 6.50 86.73 0.56 2.94 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.81 8.11 -2.39 -0.02 0.79 16 33 H 0.08 1.26 8.02 -2.39 -0.02 1.24 16 34 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.14 4.46 8.14 -2.39 -0.02 4.44 16 38 H 0.14 4.45 8.14 -2.39 -0.02 4.44 16 39 H 0.06 2.60 4.32 -2.39 -0.01 2.59 16 40 H 0.05 2.06 6.21 -2.39 -0.01 2.05 16 41 H 0.06 2.71 8.11 -2.39 -0.02 2.69 16 42 H 0.06 2.57 5.46 -2.39 -0.01 2.55 16 43 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 44 H 0.04 1.99 2.28 -2.39 -0.01 1.99 16 45 H 0.27 15.33 8.31 -92.70 -0.77 14.56 16 46 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.08 1.41 7.83 -2.39 -0.02 1.39 16 Total: -1.00 -70.36 364.30 -0.01 -70.37 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.69 Total: 20.12 kcal Atomic # 6 Polarization: -58.84 SS G_CDS: 4.96 Total: -53.88 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.53 Total: -83.99 kcal Atomic # 8 Polarization: -80.52 SS G_CDS: -5.43 Total: -85.96 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.56 Total: 45.62 kcal Atomic # 16 Polarization: 87.98 SS G_CDS: -0.26 Total: 87.72 kcal Total: -70.36 -0.01 -70.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331337754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.209 kcal (2) G-P(sol) polarization free energy of solvation -70.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds