Wall clock time and date at job start Tue Mar 31 2020 12:31:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46501 * 109.46594 * 2 1
4 4 C 1.46502 * 119.99826 * 269.99637 * 3 2 1
5 5 C 1.50702 * 109.47156 * 270.00214 * 4 3 2
6 6 H 1.08003 * 120.00227 * 0.02562 * 5 4 3
7 7 C 1.37884 * 119.99865 * 179.97438 * 5 4 3
8 8 N 1.31517 * 119.99509 * 180.02562 * 7 5 4
9 9 Si 1.86799 * 120.00122 * 0.02562 * 7 5 4
10 10 H 1.48500 * 109.46899 * 89.99662 * 9 7 5
11 11 H 1.48493 * 109.46866 * 209.99860 * 9 7 5
12 12 H 1.48499 * 109.46978 * 329.99854 * 9 7 5
13 13 C 1.34769 * 120.00208 * 90.00339 * 3 2 1
14 14 O 1.21280 * 120.00360 * 179.97438 * 13 3 2
15 15 C 1.50699 * 120.00181 * 359.97438 * 13 3 2
16 16 C 1.53003 * 109.47586 * 180.02562 * 15 13 3
17 17 C 1.50691 * 109.47361 * 180.02562 * 16 15 13
18 18 C 1.37971 * 120.07513 * 98.60304 * 17 16 15
19 19 C 1.38351 * 120.14871 * 179.97438 * 18 17 16
20 20 C 1.38389 * 120.30296 * 0.05191 * 19 18 17
21 21 C 1.37925 * 120.15112 * 359.97438 * 20 19 18
22 22 C 1.39607 * 120.08010 * 278.33074 * 17 16 15
23 23 C 1.47731 * 120.14494 * 359.97438 * 22 17 16
24 24 O 1.21472 * 119.99893 * 5.36597 * 23 22 17
25 25 O 1.34708 * 119.99804 * 185.35652 * 23 22 17
26 26 C 1.45205 * 117.00047 * 180.02562 * 25 23 22
27 27 H 1.09007 * 109.47483 * 300.00288 * 1 2 3
28 28 H 1.09002 * 109.47286 * 60.00356 * 1 2 3
29 29 H 1.09008 * 109.47144 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47388 * 239.99887 * 2 1 3
31 31 H 1.08996 * 109.47056 * 119.99294 * 2 1 3
32 32 H 1.08999 * 109.47014 * 30.00248 * 4 3 2
33 33 H 1.08998 * 109.46939 * 150.00734 * 4 3 2
34 34 H 0.96998 * 119.99535 * 180.02562 * 8 7 5
35 35 H 1.09005 * 109.47140 * 60.00210 * 15 13 3
36 36 H 1.08999 * 109.47247 * 300.00659 * 15 13 3
37 37 H 1.08995 * 109.46873 * 59.99848 * 16 15 13
38 38 H 1.09003 * 109.46548 * 300.00315 * 16 15 13
39 39 H 1.07993 * 119.92894 * 0.02562 * 18 17 16
40 40 H 1.07998 * 119.84591 * 180.02562 * 19 18 17
41 41 H 1.07995 * 119.92243 * 179.97438 * 20 19 18
42 42 H 1.08003 * 120.07372 * 180.02562 * 21 20 19
43 43 H 1.08995 * 109.46707 * 300.00326 * 26 25 23
44 44 H 1.09001 * 109.47047 * 60.00205 * 26 25 23
45 45 H 1.09002 * 109.47258 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2624 2.0718 -1.2688
5 6 3.6857 1.8351 -1.7038
6 1 4.3426 1.2304 -1.0961
7 6 4.1490 2.3897 -2.8780
8 7 5.3910 2.1827 -3.2578
9 14 3.0126 3.4351 -3.9294
10 1 3.1160 4.8554 -3.5083
11 1 3.4056 3.3119 -5.3560
12 1 1.6130 2.9691 -3.7594
13 6 2.2428 2.0166 1.1671
14 8 2.6474 3.1599 1.1671
15 6 1.9913 1.3064 2.4723
16 6 2.3222 2.2440 3.6352
17 6 2.0712 1.5336 4.9403
18 6 3.1207 0.9605 5.6285
19 6 2.8922 0.3084 6.8270
20 6 1.6109 0.2251 7.3434
21 6 0.5525 0.7932 6.6655
22 6 0.7771 1.4588 5.4586
23 6 -0.3506 2.0758 4.7305
24 8 -0.1704 2.5642 3.6330
25 8 -1.5786 2.0965 5.2837
26 6 -2.6392 2.7186 4.5112
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5137 0.8900
32 1 1.5816 1.6877 -2.0284
33 1 2.0954 3.1411 -1.1384
34 1 5.7170 2.5731 -4.0837
35 1 2.6213 0.4188 2.5302
36 1 0.9433 1.0125 2.5299
37 1 1.6919 3.1314 3.5771
38 1 3.3702 2.5382 3.5777
39 1 4.1231 1.0217 5.2311
40 1 3.7173 -0.1382 7.3619
41 1 1.4394 -0.2857 8.2793
42 1 -0.4468 0.7278 7.0699
43 1 -2.3860 3.7615 4.3207
44 1 -2.7539 2.1935 3.5629
45 1 -3.5735 2.6682 5.0703
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000340100660.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:04
Heat of formation + Delta-G solvation = -93.987282 kcal
Electronic energy + Delta-G solvation = -27205.285525 eV
Core-core repulsion = 23381.145638 eV
Total energy + Delta-G solvation = -3824.139888 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-40.91240 -39.25181 -38.80386 -36.63748 -35.30882 -33.78083 -32.61672 -31.74550
-30.37960 -29.84291 -27.99671 -27.51169 -24.89435 -23.89054 -22.87435 -22.21212
-21.50843 -20.58803 -18.16253 -18.07697 -17.11228 -16.86416 -16.60283 -16.38678
-15.72001 -15.60441 -15.38141 -14.79427 -14.64004 -14.05684 -13.81840 -13.56055
-13.40005 -13.35312 -13.15347 -12.81834 -12.60582 -12.35018 -12.30446 -12.07074
-11.89908 -11.79351 -11.67902 -11.33916 -11.23571 -11.07232 -10.87778 -10.73430
-10.53927 -10.41943 -10.08789 -10.05304 -9.47325 -9.28034 -9.07002 -8.75446
-8.53050 -7.59008 -6.03293 -4.00998 0.50286 1.10569 2.40548 2.51409
3.33533 3.39471 3.41876 3.51785 3.55674 3.97713 4.45081 4.46145
4.58670 4.65905 4.76792 4.92271 5.01440 5.07703 5.15595 5.23113
5.31299 5.33664 5.35510 5.42842 5.47556 5.59215 5.65010 5.72148
5.82493 5.89801 6.00002 6.01724 6.10443 6.15860 6.18578 6.23272
6.42698 6.50966 6.56267 6.68756 6.81594 7.05771 7.48736 7.64429
7.68885 8.40545 8.54712 8.99933 9.15403 9.58069 11.10265
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.016525 B = 0.003453 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1693.971594 B = 8106.710313 C = 8935.219473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C 0.108 3.892
3 N -0.596 5.596
4 C 0.216 3.784
5 C -0.525 4.525
6 H 0.074 0.926
7 C 0.071 3.929
8 N -0.900 5.900
9 Si 0.876 3.124
10 H -0.274 1.274
11 H -0.285 1.285
12 H -0.266 1.266
13 C 0.514 3.486
14 O -0.542 6.542
15 C -0.121 4.121
16 C -0.077 4.077
17 C -0.008 4.008
18 C -0.129 4.129
19 C -0.080 4.080
20 C -0.143 4.143
21 C -0.062 4.062
22 C -0.129 4.129
23 C 0.498 3.502
24 O -0.481 6.481
25 O -0.360 6.360
26 C 0.037 3.963
27 H 0.052 0.948
28 H 0.057 0.943
29 H 0.059 0.941
30 H 0.082 0.918
31 H 0.067 0.933
32 H 0.027 0.973
33 H 0.035 0.965
34 H 0.264 0.736
35 H 0.081 0.919
36 H 0.089 0.911
37 H 0.104 0.896
38 H 0.078 0.922
39 H 0.135 0.865
40 H 0.129 0.871
41 H 0.129 0.871
42 H 0.136 0.864
43 H 0.064 0.936
44 H 0.064 0.936
45 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.899 -6.559 22.017 26.851
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C -0.016 4.016
3 N -0.327 5.327
4 C 0.096 3.904
5 C -0.564 4.564
6 H 0.092 0.908
7 C -0.131 4.131
8 N -0.538 5.538
9 Si 0.703 3.297
10 H -0.199 1.199
11 H -0.211 1.211
12 H -0.191 1.191
13 C 0.302 3.698
14 O -0.420 6.420
15 C -0.162 4.162
16 C -0.114 4.114
17 C -0.008 4.008
18 C -0.147 4.147
19 C -0.099 4.099
20 C -0.161 4.161
21 C -0.080 4.080
22 C -0.130 4.130
23 C 0.343 3.657
24 O -0.368 6.368
25 O -0.277 6.277
26 C -0.057 4.057
27 H 0.071 0.929
28 H 0.077 0.923
29 H 0.078 0.922
30 H 0.101 0.899
31 H 0.085 0.915
32 H 0.045 0.955
33 H 0.053 0.947
34 H 0.073 0.927
35 H 0.099 0.901
36 H 0.108 0.892
37 H 0.122 0.878
38 H 0.097 0.903
39 H 0.153 0.847
40 H 0.147 0.853
41 H 0.147 0.853
42 H 0.153 0.847
43 H 0.083 0.917
44 H 0.083 0.917
45 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -13.538 -5.742 21.491 26.041
hybrid contribution -0.590 0.478 -0.786 1.093
sum -14.128 -5.265 20.705 25.613
Atomic orbital electron populations
1.22231 0.96988 1.01313 1.02257 1.21396 0.93292 0.84032 1.02862
1.47907 1.64472 1.13306 1.07055 1.19608 0.97111 0.93403 0.80310
1.21363 0.95417 1.32626 1.06967 0.90801 1.24858 0.94997 0.95849
0.97375 1.69904 1.15146 1.45200 1.23587 0.86847 0.81530 0.81649
0.79660 1.19933 1.21135 1.19100 1.20254 0.77733 0.86833 0.85019
1.90643 1.45773 1.18247 1.87289 1.21531 1.03236 0.98852 0.92534
1.20642 1.03645 0.98910 0.88251 1.20192 0.91041 0.93701 0.95901
1.21157 0.99243 0.98853 0.95457 1.21455 0.97195 0.96147 0.95055
1.21119 0.92627 1.01643 1.00749 1.21419 0.99912 0.93992 0.92672
1.18970 0.91244 1.05315 0.97450 1.21277 0.82700 0.77308 0.84464
1.90926 1.83484 1.42433 1.19976 1.86512 1.18428 1.73468 1.49290
1.23269 0.87710 0.98196 0.96482 0.92903 0.92338 0.92201 0.89921
0.91512 0.95473 0.94694 0.92657 0.90069 0.89231 0.87795 0.90309
0.84691 0.85328 0.85317 0.84659 0.91727 0.91699 0.88161
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.41 10.24 37.16 0.38 -2.03 16
2 C 0.11 1.83 5.93 -4.04 -0.02 1.81 16
3 N -0.60 -13.07 2.46 -175.07 -0.43 -13.50 16
4 C 0.22 5.57 4.23 -5.19 -0.02 5.55 16
5 C -0.53 -15.59 9.94 -34.44 -0.34 -15.93 16
6 H 0.07 2.39 8.06 -52.48 -0.42 1.96 16
7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16
8 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16
9 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16
10 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16
11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16
12 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16
13 C 0.51 11.30 7.67 -10.99 -0.08 11.22 16
14 O -0.54 -14.18 15.56 5.56 0.09 -14.10 16
15 C -0.12 -2.01 3.76 -27.88 -0.10 -2.11 16
16 C -0.08 -1.21 3.90 -27.89 -0.11 -1.31 16
17 C -0.01 -0.10 5.17 -104.21 -0.54 -0.64 16
18 C -0.13 -1.32 9.66 -39.64 -0.38 -1.70 16
19 C -0.08 -0.65 10.04 -39.48 -0.40 -1.05 16
20 C -0.14 -1.10 10.03 -39.64 -0.40 -1.50 16
21 C -0.06 -0.56 9.62 -39.17 -0.38 -0.94 16
22 C -0.13 -1.51 5.87 -104.98 -0.62 -2.13 16
23 C 0.50 6.44 7.76 34.61 0.27 6.70 16
24 O -0.48 -7.62 11.38 -19.24 -0.22 -7.84 16
25 O -0.36 -3.87 9.83 -40.51 -0.40 -4.27 16
26 C 0.04 0.31 10.57 101.05 1.07 1.38 16
27 H 0.05 0.76 7.22 -51.93 -0.37 0.38 16
28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
29 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16
30 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16
31 H 0.07 0.97 6.44 -51.93 -0.33 0.63 16
32 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16
33 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16
34 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
35 H 0.08 1.19 7.40 -51.93 -0.38 0.81 16
36 H 0.09 1.41 5.61 -51.93 -0.29 1.12 16
37 H 0.10 1.85 5.92 -51.93 -0.31 1.54 16
38 H 0.08 1.26 7.98 -51.93 -0.41 0.85 16
39 H 0.14 1.25 8.04 -52.49 -0.42 0.82 16
40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16
41 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16
42 H 0.14 0.99 7.63 -52.48 -0.40 0.59 16
43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16
44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
LS Contribution 372.73 15.07 5.62 5.62
Total: -1.00 -36.69 372.73 -7.64 -44.33
By element:
Atomic # 1 Polarization: 6.95 SS G_CDS: -6.62 Total: 0.33 kcal
Atomic # 6 Polarization: 1.13 SS G_CDS: -1.78 Total: -0.64 kcal
Atomic # 7 Polarization: -41.40 SS G_CDS: 0.34 Total: -41.06 kcal
Atomic # 8 Polarization: -25.67 SS G_CDS: -0.53 Total: -26.20 kcal
Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -36.69 -7.64 -44.33 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340100660.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -49.657 kcal
(2) G-P(sol) polarization free energy of solvation -36.692 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.349 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.330 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.987 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds