Wall clock time and date at job start Tue Mar 31 2020 12:31:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 N 1.46501 * 109.46594 * 2 1
4 4 C 1.46502 * 119.99826 * 269.99637 * 3 2 1
5 5 C 1.50702 * 109.47156 * 270.00214 * 4 3 2
6 6 H 1.08003 * 120.00227 * 0.02562 * 5 4 3
7 7 C 1.37884 * 119.99865 * 179.97438 * 5 4 3
8 8 N 1.31517 * 119.99509 * 180.02562 * 7 5 4
9 9 Si 1.86799 * 120.00122 * 0.02562 * 7 5 4
10 10 H 1.48500 * 109.46899 * 89.99662 * 9 7 5
11 11 H 1.48493 * 109.46866 * 209.99860 * 9 7 5
12 12 H 1.48499 * 109.46978 * 329.99854 * 9 7 5
13 13 C 1.34769 * 120.00208 * 90.00339 * 3 2 1
14 14 O 1.21280 * 120.00360 * 179.97438 * 13 3 2
15 15 C 1.50699 * 120.00181 * 359.97438 * 13 3 2
16 16 C 1.53003 * 109.47586 * 180.02562 * 15 13 3
17 17 C 1.50691 * 109.47361 * 180.02562 * 16 15 13
18 18 C 1.37971 * 120.07513 * 98.60304 * 17 16 15
19 19 C 1.38351 * 120.14871 * 179.97438 * 18 17 16
20 20 C 1.38389 * 120.30296 * 0.05191 * 19 18 17
21 21 C 1.37925 * 120.15112 * 359.97438 * 20 19 18
22 22 C 1.39607 * 120.08010 * 278.33074 * 17 16 15
23 23 C 1.47731 * 120.14494 * 359.97438 * 22 17 16
24 24 O 1.21472 * 119.99893 * 5.36597 * 23 22 17
25 25 O 1.34708 * 119.99804 * 185.35652 * 23 22 17
26 26 C 1.45205 * 117.00047 * 180.02562 * 25 23 22
27 27 H 1.09007 * 109.47483 * 300.00288 * 1 2 3
28 28 H 1.09002 * 109.47286 * 60.00356 * 1 2 3
29 29 H 1.09008 * 109.47144 * 180.02562 * 1 2 3
30 30 H 1.08993 * 109.47388 * 239.99887 * 2 1 3
31 31 H 1.08996 * 109.47056 * 119.99294 * 2 1 3
32 32 H 1.08999 * 109.47014 * 30.00248 * 4 3 2
33 33 H 1.08998 * 109.46939 * 150.00734 * 4 3 2
34 34 H 0.96998 * 119.99535 * 180.02562 * 8 7 5
35 35 H 1.09005 * 109.47140 * 60.00210 * 15 13 3
36 36 H 1.08999 * 109.47247 * 300.00659 * 15 13 3
37 37 H 1.08995 * 109.46873 * 59.99848 * 16 15 13
38 38 H 1.09003 * 109.46548 * 300.00315 * 16 15 13
39 39 H 1.07993 * 119.92894 * 0.02562 * 18 17 16
40 40 H 1.07998 * 119.84591 * 180.02562 * 19 18 17
41 41 H 1.07995 * 119.92243 * 179.97438 * 20 19 18
42 42 H 1.08003 * 120.07372 * 180.02562 * 21 20 19
43 43 H 1.08995 * 109.46707 * 300.00326 * 26 25 23
44 44 H 1.09001 * 109.47047 * 60.00205 * 26 25 23
45 45 H 1.09002 * 109.47258 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.2624 2.0718 -1.2688
5 6 3.6857 1.8351 -1.7038
6 1 4.3426 1.2304 -1.0961
7 6 4.1490 2.3897 -2.8780
8 7 5.3910 2.1827 -3.2578
9 14 3.0126 3.4351 -3.9294
10 1 3.1160 4.8554 -3.5083
11 1 3.4056 3.3119 -5.3560
12 1 1.6130 2.9691 -3.7594
13 6 2.2428 2.0166 1.1671
14 8 2.6474 3.1599 1.1671
15 6 1.9913 1.3064 2.4723
16 6 2.3222 2.2440 3.6352
17 6 2.0712 1.5336 4.9403
18 6 3.1207 0.9605 5.6285
19 6 2.8922 0.3084 6.8270
20 6 1.6109 0.2251 7.3434
21 6 0.5525 0.7932 6.6655
22 6 0.7771 1.4588 5.4586
23 6 -0.3506 2.0758 4.7305
24 8 -0.1704 2.5642 3.6330
25 8 -1.5786 2.0965 5.2837
26 6 -2.6392 2.7186 4.5112
27 1 -0.3634 0.5139 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0277 0.0005
30 1 1.8933 -0.5138 -0.8899
31 1 1.8933 -0.5137 0.8900
32 1 1.5816 1.6877 -2.0284
33 1 2.0954 3.1411 -1.1384
34 1 5.7170 2.5731 -4.0837
35 1 2.6213 0.4188 2.5302
36 1 0.9433 1.0125 2.5299
37 1 1.6919 3.1314 3.5771
38 1 3.3702 2.5382 3.5777
39 1 4.1231 1.0217 5.2311
40 1 3.7173 -0.1382 7.3619
41 1 1.4394 -0.2857 8.2793
42 1 -0.4468 0.7278 7.0699
43 1 -2.3860 3.7615 4.3207
44 1 -2.7539 2.1935 3.5629
45 1 -3.5735 2.6682 5.0703
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000340100660.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:31:04
Heat of formation + Delta-G solvation = -116.937130 kcal
Electronic energy + Delta-G solvation = -27206.280705 eV
Core-core repulsion = 23381.145638 eV
Total energy + Delta-G solvation = -3825.135068 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 319.162 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.84464 -40.76213 -39.78572 -37.57763 -37.04209 -35.09328 -34.65491 -32.49798
-32.00674 -31.00475 -29.45863 -28.59236 -26.18203 -24.81458 -24.40680 -23.69038
-22.59310 -21.52240 -19.84296 -19.12496 -18.92398 -18.15025 -17.83872 -17.41612
-17.15981 -16.81218 -16.51610 -16.21698 -15.70338 -15.55454 -15.02218 -14.76702
-14.64314 -14.47791 -14.45688 -14.17552 -13.80776 -13.73304 -13.63596 -13.36002
-13.22131 -13.04547 -12.87354 -12.64443 -12.56869 -12.45424 -12.24138 -12.06036
-11.97932 -11.89941 -11.76285 -11.67870 -11.12683 -10.85409 -10.65209 -10.01240
-9.75637 -9.42899 -8.36396 -6.40938 -0.29084 0.37295 1.29004 1.33546
1.42086 1.53459 1.71006 1.82636 2.28326 2.31010 2.79616 2.97469
3.53364 3.67646 3.89548 3.95200 4.04392 4.10140 4.19084 4.26595
4.31974 4.32954 4.36032 4.44961 4.48528 4.54950 4.60666 4.69806
4.75679 4.83205 4.89792 4.92000 4.93883 4.98132 5.04316 5.12667
5.32104 5.34181 5.37135 5.44505 5.50361 5.60651 5.65717 5.93054
6.22973 6.59389 6.70249 6.72703 7.19599 7.43104 8.80596
Molecular weight = 319.16amu
Principal moments of inertia in cm(-1)
A = 0.016525 B = 0.003453 C = 0.003133
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1693.971594 B = 8106.710313 C = 8935.219473
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.100 3.900
3 N -0.603 5.603
4 C 0.226 3.774
5 C -0.535 4.535
6 H 0.030 0.970
7 C 0.013 3.987
8 N -0.943 5.943
9 Si 0.946 3.054
10 H -0.277 1.277
11 H -0.270 1.270
12 H -0.242 1.242
13 C 0.502 3.498
14 O -0.596 6.596
15 C -0.104 4.104
16 C -0.069 4.069
17 C -0.028 4.028
18 C -0.138 4.138
19 C -0.071 4.071
20 C -0.131 4.131
21 C -0.057 4.057
22 C -0.146 4.146
23 C 0.497 3.503
24 O -0.521 6.521
25 O -0.355 6.355
26 C 0.031 3.969
27 H 0.050 0.950
28 H 0.047 0.953
29 H 0.097 0.903
30 H 0.076 0.924
31 H 0.093 0.907
32 H 0.046 0.954
33 H 0.012 0.988
34 H 0.269 0.731
35 H 0.103 0.897
36 H 0.102 0.898
37 H 0.075 0.925
38 H 0.061 0.939
39 H 0.138 0.862
40 H 0.161 0.839
41 H 0.166 0.834
42 H 0.155 0.845
43 H 0.054 0.946
44 H 0.059 0.941
45 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.170 -8.539 24.197 30.330
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.023 4.023
3 N -0.334 5.334
4 C 0.104 3.896
5 C -0.574 4.574
6 H 0.048 0.952
7 C -0.185 4.185
8 N -0.583 5.583
9 Si 0.769 3.231
10 H -0.203 1.203
11 H -0.195 1.195
12 H -0.165 1.165
13 C 0.292 3.708
14 O -0.478 6.478
15 C -0.143 4.143
16 C -0.106 4.106
17 C -0.029 4.029
18 C -0.156 4.156
19 C -0.089 4.089
20 C -0.149 4.149
21 C -0.075 4.075
22 C -0.147 4.147
23 C 0.343 3.657
24 O -0.412 6.412
25 O -0.271 6.271
26 C -0.062 4.062
27 H 0.069 0.931
28 H 0.066 0.934
29 H 0.115 0.885
30 H 0.095 0.905
31 H 0.111 0.889
32 H 0.064 0.936
33 H 0.030 0.970
34 H 0.078 0.922
35 H 0.121 0.879
36 H 0.120 0.880
37 H 0.093 0.907
38 H 0.080 0.920
39 H 0.155 0.845
40 H 0.178 0.822
41 H 0.183 0.817
42 H 0.173 0.827
43 H 0.073 0.927
44 H 0.078 0.922
45 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges -15.847 -7.782 23.701 29.554
hybrid contribution 0.164 1.027 -1.328 1.687
sum -15.682 -6.755 22.374 28.145
Atomic orbital electron populations
1.22136 0.94382 1.03527 1.01616 1.21741 0.95369 0.81250 1.03895
1.48069 1.64304 1.15182 1.05846 1.19267 0.94971 0.92760 0.82633
1.21549 0.96926 1.32169 1.06746 0.95159 1.25822 0.96741 0.97106
0.98868 1.70042 1.17264 1.46516 1.24509 0.85737 0.80383 0.78990
0.77990 1.20321 1.19491 1.16524 1.21276 0.76401 0.86498 0.86645
1.90601 1.48185 1.20776 1.88200 1.21458 1.04288 0.98961 0.89595
1.20408 1.01751 0.98270 0.90193 1.19924 0.92431 0.95473 0.95029
1.21289 0.98753 0.99125 0.96427 1.21829 0.98609 0.94624 0.93823
1.21571 0.91734 1.00137 1.01430 1.21685 1.01495 0.92946 0.91394
1.19033 0.90350 1.06560 0.98749 1.21641 0.83520 0.76481 0.84017
1.90914 1.84108 1.44358 1.21804 1.86506 1.18099 1.73264 1.49274
1.23524 0.88298 0.97385 0.96994 0.93102 0.93411 0.88474 0.90525
0.88900 0.93572 0.96957 0.92191 0.87913 0.87953 0.90690 0.92022
0.84460 0.82182 0.81668 0.82727 0.92686 0.92177 0.84482
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -4.19 10.24 71.98 0.74 -3.45 16
2 C 0.10 3.29 5.93 86.38 0.51 3.80 16
3 N -0.60 -27.10 2.46 -826.18 -2.03 -29.13 16
4 C 0.23 11.91 4.23 85.63 0.36 12.28 16
5 C -0.54 -33.07 9.94 25.60 0.25 -32.81 16
6 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16
7 C 0.01 0.78 5.47 84.66 0.46 1.24 16
8 N -0.94 -61.17 13.96 21.45 0.30 -60.87 16
9 Si 0.95 46.51 27.47 68.60 1.88 48.39 16
10 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16
11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16
12 H -0.24 -10.85 6.54 99.48 0.65 -10.20 16
13 C 0.50 23.04 7.67 87.66 0.67 23.72 16
14 O -0.60 -33.27 15.56 -3.03 -0.05 -33.32 16
15 C -0.10 -3.50 3.76 29.85 0.11 -3.38 16
16 C -0.07 -2.27 3.90 29.85 0.12 -2.15 16
17 C -0.03 -0.70 5.17 -19.60 -0.10 -0.80 16
18 C -0.14 -2.62 9.66 22.23 0.21 -2.41 16
19 C -0.07 -0.89 10.04 22.33 0.22 -0.66 16
20 C -0.13 -1.42 10.03 22.23 0.22 -1.20 16
21 C -0.06 -0.85 9.62 22.54 0.22 -0.64 16
22 C -0.15 -3.27 5.87 -20.10 -0.12 -3.38 16
23 C 0.50 12.79 7.76 70.33 0.55 13.34 16
24 O -0.52 -17.18 11.38 19.93 0.23 -16.95 16
25 O -0.35 -7.21 9.83 -56.18 -0.55 -7.77 16
26 C 0.03 0.49 10.57 113.37 1.20 1.69 16
27 H 0.05 1.37 7.22 -2.38 -0.02 1.36 16
28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
29 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16
30 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16
31 H 0.09 2.55 6.44 -2.39 -0.02 2.54 16
32 H 0.05 2.25 7.13 -2.39 -0.02 2.23 16
33 H 0.01 0.71 6.85 -2.39 -0.02 0.69 16
34 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16
35 H 0.10 2.98 7.40 -2.38 -0.02 2.96 16
36 H 0.10 3.22 5.61 -2.39 -0.01 3.21 16
37 H 0.07 2.91 5.92 -2.39 -0.01 2.89 16
38 H 0.06 2.15 7.98 -2.39 -0.02 2.13 16
39 H 0.14 2.44 8.04 -2.91 -0.02 2.42 16
40 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16
41 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16
42 H 0.16 1.68 7.63 -2.91 -0.02 1.65 16
43 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16
44 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
45 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16
Total: -1.00 -85.97 372.73 6.35 -79.62
By element:
Atomic # 1 Polarization: 13.91 SS G_CDS: 0.93 Total: 14.84 kcal
Atomic # 6 Polarization: -0.45 SS G_CDS: 5.63 Total: 5.18 kcal
Atomic # 7 Polarization: -88.27 SS G_CDS: -1.73 Total: -90.00 kcal
Atomic # 8 Polarization: -57.67 SS G_CDS: -0.37 Total: -58.04 kcal
Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.39 kcal
Total: -85.97 6.35 -79.62 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000340100660.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -37.314 kcal
(2) G-P(sol) polarization free energy of solvation -85.970 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.346 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.623 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.937 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds