Wall clock time and date at job start Tue Mar 31 2020 13:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45202 * 109.47256 * 2 1 4 4 C 1.34227 * 116.99703 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00344 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.99752 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47153 * 198.30938 * 6 4 3 8 8 C 1.52996 * 109.47159 * 78.30965 * 6 4 3 9 9 N 1.46500 * 109.46961 * 318.31076 * 6 4 3 10 10 C 1.46505 * 120.00259 * 2.12381 * 9 6 4 11 11 C 1.34777 * 120.00064 * 182.12157 * 9 6 4 12 12 O 1.21587 * 120.00018 * 356.35595 * 11 9 6 13 13 C 1.47635 * 119.99984 * 176.35121 * 11 9 6 14 14 C 1.40016 * 119.89858 * 35.79478 * 13 11 9 15 15 C 1.36318 * 120.10972 * 180.25495 * 14 13 11 16 16 C 1.40889 * 119.88976 * 359.47388 * 15 14 13 17 17 C 1.41108 * 120.10096 * 180.29881 * 16 15 14 18 18 H 1.08002 * 120.00149 * 147.18947 * 17 16 15 19 19 C 1.40220 * 120.00240 * 327.18425 * 17 16 15 20 20 N 1.30648 * 120.00047 * 358.07272 * 19 17 16 21 21 Si 1.86799 * 120.00238 * 178.06965 * 19 17 16 22 22 H 1.48505 * 109.46951 * 60.00295 * 21 19 17 23 23 H 1.48500 * 109.47396 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47319 * 300.00520 * 21 19 17 25 25 C 1.40888 * 119.79346 * 0.27471 * 16 15 14 26 26 C 1.36317 * 119.89247 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47218 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47105 * 300.00357 * 1 2 3 29 29 H 1.09002 * 109.47388 * 59.99993 * 1 2 3 30 30 H 1.08999 * 109.47238 * 239.99269 * 2 1 3 31 31 H 1.09002 * 109.47388 * 120.00007 * 2 1 3 32 32 H 1.09000 * 109.47101 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47252 * 300.00044 * 7 6 4 34 34 H 1.09005 * 109.46933 * 59.99953 * 7 6 4 35 35 H 1.09004 * 109.47235 * 300.00261 * 8 6 4 36 36 H 1.09000 * 109.47024 * 60.00091 * 8 6 4 37 37 H 1.08998 * 109.47166 * 180.02562 * 8 6 4 38 38 H 1.08992 * 109.47189 * 205.96821 * 10 9 6 39 39 H 1.09000 * 109.46627 * 325.96737 * 10 9 6 40 40 H 1.08999 * 109.47280 * 85.96205 * 10 9 6 41 41 H 1.07997 * 119.94353 * 0.02675 * 14 13 11 42 42 H 1.08000 * 120.05675 * 179.74692 * 15 14 13 43 43 H 0.96997 * 120.00177 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.05301 * 180.02562 * 25 16 15 45 45 H 1.08001 * 119.94502 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 6 5.3810 2.8850 -0.4548 8 6 3.8462 3.5208 1.4112 9 7 3.1540 3.7826 -0.9198 10 6 1.9930 3.2331 -1.6245 11 6 3.5165 5.0657 -1.1165 12 8 4.4387 5.5409 -0.4825 13 6 2.7939 5.8941 -2.1020 14 6 1.4145 5.7281 -2.2756 15 6 0.7439 6.4871 -3.1880 16 6 1.4391 7.4475 -3.9491 17 6 0.7483 8.2399 -4.8903 18 1 1.0667 9.2544 -5.0796 19 6 -0.3517 7.7103 -5.5801 20 7 -0.7138 6.4712 -5.3791 21 14 -1.2994 8.7763 -6.7862 22 1 -0.3870 9.2349 -7.8644 23 1 -2.4090 7.9870 -7.3787 24 1 -1.8559 9.9547 -6.0742 25 6 2.8262 7.6145 -3.7672 26 6 3.4893 6.8466 -2.8567 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 5.7975 3.8923 -0.4557 33 1 5.9515 2.2561 0.2286 34 1 5.4341 2.4694 -1.4611 35 1 2.8058 3.5580 1.7345 36 1 4.4167 2.8919 2.0947 37 1 4.2624 4.5281 1.4107 38 1 1.8358 3.7850 -2.5511 39 1 2.1707 2.1823 -1.8531 40 1 1.1088 3.3231 -0.9935 41 1 0.8816 4.9951 -1.6883 42 1 -0.3194 6.3556 -3.3241 43 1 -1.4750 6.1049 -5.8559 44 1 3.3632 8.3497 -4.3481 45 1 4.5525 6.9742 -2.7163 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340152051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:14 Heat of formation + Delta-G solvation = -100.312479 kcal Electronic energy + Delta-G solvation = -27611.496207 eV Core-core repulsion = 23787.082039 eV Total energy + Delta-G solvation = -3824.414169 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36268 -40.91162 -39.08059 -37.99046 -37.03419 -35.67596 -34.07665 -32.56755 -31.54071 -31.32833 -28.44369 -28.08735 -27.35614 -25.95454 -23.98400 -23.33501 -22.74875 -21.67405 -20.33215 -19.31455 -18.92655 -18.15659 -17.88275 -17.25165 -17.16268 -16.50504 -16.30637 -15.84144 -15.46922 -15.12917 -14.97924 -14.68353 -14.53525 -14.26014 -14.21568 -13.71314 -13.63484 -13.55833 -13.51299 -13.33955 -13.25953 -13.00734 -12.89443 -12.79478 -12.68467 -12.57367 -12.46591 -12.38117 -12.26937 -11.75207 -11.63600 -11.48317 -11.20948 -11.12758 -10.49794 -9.78005 -9.46066 -9.25842 -8.62201 -6.46334 0.52043 0.79489 1.15934 1.42465 1.43978 1.46486 1.53142 1.94554 2.05155 2.21854 2.79122 3.29696 3.65994 3.71265 3.79592 4.01757 4.05117 4.07001 4.11318 4.34680 4.41008 4.45346 4.53116 4.58246 4.62827 4.66747 4.71406 4.78899 4.94545 4.95368 4.98808 5.01233 5.09353 5.12938 5.16099 5.21126 5.34482 5.37399 5.49414 5.66323 5.79435 5.99839 6.05460 6.28741 6.38091 6.49099 6.61712 6.85854 6.93477 7.27466 8.30054 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.003540 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.796742 B = 7908.779777 C = 9247.078513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.348 6.348 4 C 0.479 3.521 5 O -0.515 6.515 6 C 0.184 3.816 7 C -0.148 4.148 8 C -0.156 4.156 9 N -0.608 5.608 10 C 0.076 3.924 11 C 0.584 3.416 12 O -0.576 6.576 13 C -0.274 4.274 14 C -0.065 4.065 15 C -0.184 4.184 16 C 0.100 3.900 17 C -0.485 4.485 18 H 0.080 0.920 19 C 0.036 3.964 20 N -0.816 5.816 21 Si 0.987 3.013 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.242 4.242 26 C -0.040 4.040 27 H 0.100 0.900 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.054 0.946 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.292 0.708 44 H 0.104 0.896 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.086 -11.636 7.649 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.024 4.024 3 O -0.264 6.264 4 C 0.322 3.678 5 O -0.403 6.403 6 C 0.098 3.902 7 C -0.206 4.206 8 C -0.214 4.214 9 N -0.342 5.342 10 C -0.065 4.065 11 C 0.378 3.622 12 O -0.457 6.457 13 C -0.278 4.278 14 C -0.084 4.084 15 C -0.204 4.204 16 C 0.097 3.903 17 C -0.514 4.514 18 H 0.098 0.902 19 C -0.180 4.180 20 N -0.441 5.441 21 Si 0.807 3.193 22 H -0.187 1.187 23 H -0.190 1.190 24 H -0.184 1.184 25 C -0.261 4.261 26 C -0.059 4.059 27 H 0.119 0.881 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.136 0.864 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.614 -11.947 7.911 14.342 hybrid contribution -0.234 0.253 -0.721 0.799 sum -0.848 -11.695 7.190 13.754 Atomic orbital electron populations 1.21833 0.90477 1.04379 1.03755 1.23371 0.97089 0.79049 1.02877 1.86757 1.22901 1.33912 1.82843 1.23391 0.81413 0.91420 0.71608 1.90654 1.61106 1.42681 1.45852 1.20448 0.92519 0.83763 0.93454 1.22080 0.92388 1.04191 1.01938 1.22183 1.03803 1.03383 0.92004 1.47790 1.31179 1.10489 1.44791 1.22488 0.87438 0.98928 0.97646 1.18383 0.82020 0.80548 0.81268 1.90586 1.32341 1.72983 1.49837 1.19142 0.94915 1.06335 1.07378 1.21125 0.92763 0.97619 0.96864 1.21158 1.00102 1.01068 0.98055 1.18149 0.91305 0.91272 0.89578 1.19983 1.11513 1.00475 1.19447 0.90218 1.26788 0.96344 0.96262 0.98649 1.69705 1.23427 1.14605 1.36401 0.85166 0.77721 0.78600 0.77765 1.18720 1.18986 1.18398 1.20934 0.94468 1.05690 1.05040 1.20437 0.98233 0.93366 0.93890 0.88095 0.91278 0.91445 0.91118 0.90730 0.90105 0.89328 0.92721 0.91022 0.89407 0.90032 0.90139 0.91137 0.90364 0.85153 0.86427 0.89707 0.87796 0.87698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.29 71.98 0.74 -1.13 16 2 C 0.05 0.86 6.19 71.98 0.45 1.31 16 3 O -0.35 -8.10 6.83 -51.39 -0.35 -8.45 16 4 C 0.48 12.95 5.74 71.24 0.41 13.36 16 5 O -0.52 -15.36 15.77 21.96 0.35 -15.02 16 6 C 0.18 5.33 0.99 2.86 0.00 5.33 16 7 C -0.15 -4.30 7.82 71.98 0.56 -3.74 16 8 C -0.16 -4.08 8.41 71.98 0.61 -3.48 16 9 N -0.61 -19.92 2.82 -807.03 -2.28 -22.20 16 10 C 0.08 2.24 7.13 127.77 0.91 3.15 16 11 C 0.58 23.14 6.80 86.72 0.59 23.73 16 12 O -0.58 -24.55 13.04 -3.99 -0.05 -24.61 16 13 C -0.27 -11.91 5.36 -19.93 -0.11 -12.02 16 14 C -0.07 -2.78 7.34 22.25 0.16 -2.61 16 15 C -0.18 -8.93 8.59 22.47 0.19 -8.73 16 16 C 0.10 5.10 5.55 -21.28 -0.12 4.98 16 17 C -0.49 -24.52 9.05 23.46 0.21 -24.31 16 18 H 0.08 3.88 7.85 -2.91 -0.02 3.86 16 19 C 0.04 1.66 5.37 85.35 0.46 2.12 16 20 N -0.82 -38.87 10.68 21.87 0.23 -38.64 16 21 Si 0.99 35.41 29.56 68.60 2.03 37.44 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.27 -8.96 7.11 99.48 0.71 -8.26 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 25 C -0.24 -11.65 9.73 22.47 0.22 -11.43 16 26 C -0.04 -1.83 9.54 22.25 0.21 -1.62 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 32 H 0.08 2.62 6.14 -2.39 -0.01 2.61 16 33 H 0.09 2.24 7.91 -2.39 -0.02 2.22 16 34 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 2.49 6.20 -2.39 -0.01 2.48 16 38 H 0.08 2.71 5.04 -2.39 -0.01 2.69 16 39 H 0.07 1.87 5.86 -2.39 -0.01 1.85 16 40 H 0.08 2.06 6.97 -2.39 -0.02 2.04 16 41 H 0.13 4.74 5.19 -2.91 -0.02 4.73 16 42 H 0.12 5.86 6.20 -2.91 -0.02 5.85 16 43 H 0.29 12.51 8.29 -92.71 -0.77 11.74 16 44 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.10 4.53 8.00 -2.91 -0.02 4.50 16 Total: -1.00 -58.79 360.72 6.43 -52.36 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 1.00 Total: 34.20 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: 5.50 Total: -15.09 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -2.05 Total: -60.84 kcal Atomic # 8 Polarization: -48.01 SS G_CDS: -0.06 Total: -48.07 kcal Atomic # 14 Polarization: 35.41 SS G_CDS: 2.03 Total: 37.44 kcal Total: -58.79 6.43 -52.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340152051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.953 kcal (2) G-P(sol) polarization free energy of solvation -58.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds