Wall clock time and date at job start Tue Mar 31 2020 12:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20764 * 120.00138 * 2 1 4 4 C 1.50703 * 119.99953 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46907 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.46527 * 180.02562 * 5 4 2 7 7 C 1.38262 * 119.94363 * 90.00664 * 6 5 4 8 8 C 1.38145 * 120.05942 * 179.97438 * 7 6 5 9 9 C 1.38732 * 119.94244 * 359.97438 * 8 7 6 10 10 O 1.35896 * 120.05873 * 180.02562 * 9 8 7 11 11 C 1.42905 * 117.00039 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46972 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00041 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00037 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00169 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47364 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47232 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99974 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99629 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47444 * 59.99585 * 21 19 17 23 23 H 1.48506 * 109.46657 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46822 * 299.99301 * 21 19 17 25 25 C 1.38738 * 119.88718 * 0.27269 * 9 8 7 26 26 C 1.38148 * 119.94048 * 359.47662 * 25 9 8 27 27 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47149 * 300.00443 * 1 2 3 29 29 H 1.08996 * 109.47434 * 59.99714 * 1 2 3 30 30 H 1.09004 * 109.47127 * 59.99790 * 4 2 1 31 31 H 1.08993 * 109.47133 * 300.00271 * 4 2 1 32 32 H 1.08992 * 109.47024 * 60.00532 * 5 4 2 33 33 H 1.08998 * 109.47146 * 299.99492 * 5 4 2 34 34 H 1.08009 * 119.97583 * 359.96692 * 7 6 5 35 35 H 1.08000 * 120.03441 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.47187 * 300.00222 * 11 10 9 37 37 H 1.09001 * 109.46558 * 60.00270 * 11 10 9 38 38 H 0.96996 * 119.99844 * 359.97438 * 14 12 11 39 39 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 40 40 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 41 41 H 1.08992 * 109.47346 * 300.00533 * 16 15 14 42 42 H 1.09004 * 109.46785 * 60.00155 * 16 15 14 43 43 H 0.97002 * 119.99803 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.02746 * 179.71906 * 25 9 8 45 45 H 1.08004 * 119.97067 * 180.22662 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 -0.0002 6 6 4.5181 -2.3307 -0.0002 7 6 4.8627 -2.9286 -1.1983 8 6 5.5538 -4.1248 -1.2012 9 6 5.9026 -4.7258 -0.0004 10 8 6.5829 -5.9022 -0.0005 11 6 6.9091 -6.4631 1.2728 12 6 7.6574 -7.7562 1.0753 13 8 7.8889 -8.1577 -0.0455 14 7 8.0692 -8.4665 2.1441 15 6 8.7971 -9.7233 1.9521 16 6 9.1463 -10.3239 3.3152 17 6 9.8945 -11.6170 3.1177 18 1 10.1000 -11.9750 2.1196 19 6 10.3157 -12.3437 4.2111 20 7 10.0650 -11.9080 5.4264 21 14 11.2438 -13.9462 3.9662 22 1 12.4926 -13.6840 3.2069 23 1 11.5826 -14.5291 5.2894 24 1 10.3942 -14.8992 3.2078 25 6 5.5512 -4.1264 1.2004 26 6 4.8646 -2.9276 1.1978 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.9971 -1.8771 -0.8892 31 1 1.9971 -1.8763 0.8907 32 1 4.0283 -0.4535 0.8893 33 1 4.0277 -0.4546 -0.8907 34 1 4.5913 -2.4602 -2.1329 35 1 5.8224 -4.5916 -2.1373 36 1 7.5335 -5.7637 1.8287 37 1 5.9926 -6.6547 1.8309 38 1 7.8844 -8.1452 3.0404 39 1 8.1735 -10.4229 1.3953 40 1 9.7138 -9.5307 1.3946 41 1 9.7699 -9.6242 3.8715 42 1 8.2297 -10.5164 3.8729 43 1 10.3617 -12.4191 6.1957 44 1 5.8175 -4.5947 2.1364 45 1 4.5940 -2.4588 2.1323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342651149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:40 Heat of formation + Delta-G solvation = -108.132639 kcal Electronic energy + Delta-G solvation = -24438.133785 eV Core-core repulsion = 20613.380509 eV Total energy + Delta-G solvation = -3824.753276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59196 -39.93893 -39.17504 -37.70816 -34.94508 -33.94962 -32.92670 -31.42537 -31.15151 -30.29988 -29.08597 -27.87359 -24.80988 -24.37394 -23.06598 -21.39944 -21.00763 -20.26520 -19.99924 -18.50597 -17.14172 -16.60220 -16.46676 -16.42457 -16.16708 -15.68095 -15.53539 -15.21605 -14.93183 -14.65491 -14.49681 -14.42415 -13.95014 -13.63682 -13.38375 -13.33475 -12.92684 -12.88382 -12.69111 -12.52113 -12.33027 -12.18008 -11.73926 -11.55177 -11.27136 -11.14137 -11.05219 -11.03164 -10.69707 -10.38776 -10.10743 -9.87526 -9.53993 -9.27235 -9.26837 -8.64515 -8.42539 -8.30381 -6.13292 -4.16431 1.07384 1.13970 1.49099 2.62919 2.79731 3.29149 3.33068 3.36395 3.40651 3.62983 3.82816 4.38310 4.41831 4.45202 4.56127 4.61826 4.66491 4.71775 4.78677 4.89413 4.94627 4.95296 5.02856 5.07801 5.15657 5.18745 5.23928 5.35886 5.46802 5.52908 5.68874 5.77496 6.01551 6.10359 6.23603 6.27150 6.34114 6.49970 6.65498 6.76943 7.03648 7.17498 7.45397 7.55029 7.83307 7.85725 8.21992 8.48547 8.89052 9.48688 10.98175 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.036351 B = 0.001536 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.078181 B =18219.510132 C =18665.949188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.354 3.646 3 O -0.461 6.461 4 C -0.169 4.169 5 C -0.066 4.066 6 C -0.128 4.128 7 C -0.076 4.076 8 C -0.147 4.147 9 C 0.131 3.869 10 O -0.288 6.288 11 C 0.040 3.960 12 C 0.507 3.493 13 O -0.527 6.527 14 N -0.718 5.718 15 C 0.123 3.877 16 C 0.013 3.987 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.894 5.894 21 Si 0.898 3.102 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C -0.209 4.209 26 C -0.074 4.074 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.399 0.601 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.130 0.870 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.632 23.488 -8.041 31.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.230 3.770 3 O -0.335 6.335 4 C -0.206 4.206 5 C -0.103 4.103 6 C -0.128 4.128 7 C -0.094 4.094 8 C -0.165 4.165 9 C 0.085 3.915 10 O -0.200 6.200 11 C -0.039 4.039 12 C 0.291 3.709 13 O -0.404 6.404 14 N -0.370 5.370 15 C 0.001 3.999 16 C -0.025 4.025 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.533 5.533 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.227 4.227 26 C -0.093 4.093 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.233 0.767 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.148 0.852 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -18.033 23.560 -8.834 30.956 hybrid contribution 0.322 -0.866 0.779 1.208 sum -17.711 22.694 -8.055 29.892 Atomic orbital electron populations 1.22286 0.94528 1.04740 1.04794 1.24720 0.91993 0.90357 0.69963 1.90428 1.71941 1.35314 1.35806 1.22218 0.95926 0.97313 1.05145 1.20305 0.92213 0.93863 1.03942 1.19708 1.02279 0.97675 0.93159 1.20833 0.96716 0.94104 0.97746 1.20460 1.02806 0.96735 0.96545 1.19130 0.92325 0.85651 0.94348 1.86183 1.70051 1.34040 1.29724 1.22572 1.00756 0.95010 0.85525 1.19939 0.80297 0.84972 0.85737 1.90729 1.55860 1.70069 1.23694 1.46199 1.57609 1.24995 1.08147 1.21791 0.94642 0.81890 1.01560 1.19331 0.97294 0.96028 0.89831 1.21004 1.36360 1.05887 0.92997 0.92245 1.24990 0.95971 0.98136 0.95103 1.69942 1.46471 1.39104 0.97750 0.86557 0.80323 0.83290 0.77287 1.20084 1.21217 1.20082 1.21297 1.05530 0.98764 0.97138 1.20811 0.96539 0.94241 0.97666 0.89911 0.89047 0.89051 0.88087 0.88109 0.90600 0.90578 0.85433 0.84939 0.89061 0.89061 0.76741 0.92303 0.92312 0.95841 0.95851 0.92756 0.85225 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.62 10.33 36.00 0.37 -0.25 16 2 C 0.35 2.05 7.27 -29.04 -0.21 1.84 16 3 O -0.46 -4.53 16.72 6.00 0.10 -4.43 16 4 C -0.17 -0.78 5.53 -27.88 -0.15 -0.94 16 5 C -0.07 -0.43 4.63 -27.88 -0.13 -0.56 16 6 C -0.13 -1.01 5.13 -104.60 -0.54 -1.55 16 7 C -0.08 -0.64 9.69 -39.61 -0.38 -1.02 16 8 C -0.15 -1.53 9.99 -39.43 -0.39 -1.93 16 9 C 0.13 1.53 6.69 -39.21 -0.26 1.27 16 10 O -0.29 -4.07 9.67 -39.33 -0.38 -4.45 16 11 C 0.04 0.48 5.22 36.01 0.19 0.67 16 12 C 0.51 8.42 7.91 -10.99 -0.09 8.33 16 13 O -0.53 -11.21 16.50 -14.35 -0.24 -11.44 16 14 N -0.72 -11.82 5.56 -60.29 -0.33 -12.15 16 15 C 0.12 2.54 5.61 -4.04 -0.02 2.52 16 16 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 17 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 21 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 C -0.21 -1.98 9.04 -39.43 -0.36 -2.33 16 26 C -0.07 -0.61 9.69 -39.61 -0.38 -0.99 16 27 H 0.08 0.10 8.00 -51.93 -0.42 -0.31 16 28 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 0.54 8.04 -51.93 -0.42 0.12 16 33 H 0.08 0.53 8.04 -51.93 -0.42 0.12 16 34 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.09 0.86 7.67 -51.93 -0.40 0.46 16 37 H 0.09 0.84 7.65 -51.93 -0.40 0.45 16 38 H 0.40 5.37 8.47 -40.82 -0.35 5.03 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.13 1.00 6.30 -52.49 -0.33 0.67 16 45 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 388.53 15.07 5.85 5.85 Total: -1.00 -34.74 388.53 -9.11 -43.85 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.92 Total: -0.56 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -2.91 Total: -7.83 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.40 Total: -37.08 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.52 Total: -20.33 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.74 -9.11 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.278 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds