Wall clock time and date at job start Tue Mar 31 2020 12:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20764 * 120.00138 * 2 1 4 4 C 1.50703 * 119.99953 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46907 * 179.97438 * 4 2 1 6 6 C 1.50703 * 109.46527 * 180.02562 * 5 4 2 7 7 C 1.38262 * 119.94363 * 90.00664 * 6 5 4 8 8 C 1.38145 * 120.05942 * 179.97438 * 7 6 5 9 9 C 1.38732 * 119.94244 * 359.97438 * 8 7 6 10 10 O 1.35896 * 120.05873 * 180.02562 * 9 8 7 11 11 C 1.42905 * 117.00039 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.46972 * 180.02562 * 11 10 9 13 13 O 1.21282 * 120.00041 * 0.02562 * 12 11 10 14 14 N 1.34779 * 120.00037 * 180.02562 * 12 11 10 15 15 C 1.46500 * 120.00169 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47364 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47232 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99974 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99629 * 180.02562 * 19 17 16 22 22 H 1.48492 * 109.47444 * 59.99585 * 21 19 17 23 23 H 1.48506 * 109.46657 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46822 * 299.99301 * 21 19 17 25 25 C 1.38738 * 119.88718 * 0.27269 * 9 8 7 26 26 C 1.38148 * 119.94048 * 359.47662 * 25 9 8 27 27 H 1.09002 * 109.47337 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47149 * 300.00443 * 1 2 3 29 29 H 1.08996 * 109.47434 * 59.99714 * 1 2 3 30 30 H 1.09004 * 109.47127 * 59.99790 * 4 2 1 31 31 H 1.08993 * 109.47133 * 300.00271 * 4 2 1 32 32 H 1.08992 * 109.47024 * 60.00532 * 5 4 2 33 33 H 1.08998 * 109.47146 * 299.99492 * 5 4 2 34 34 H 1.08009 * 119.97583 * 359.96692 * 7 6 5 35 35 H 1.08000 * 120.03441 * 179.97438 * 8 7 6 36 36 H 1.09000 * 109.47187 * 300.00222 * 11 10 9 37 37 H 1.09001 * 109.46558 * 60.00270 * 11 10 9 38 38 H 0.96996 * 119.99844 * 359.97438 * 14 12 11 39 39 H 1.09004 * 109.46923 * 300.00119 * 15 14 12 40 40 H 1.09004 * 109.47042 * 59.99705 * 15 14 12 41 41 H 1.08992 * 109.47346 * 300.00533 * 16 15 14 42 42 H 1.09004 * 109.46785 * 60.00155 * 16 15 14 43 43 H 0.97002 * 119.99803 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.02746 * 179.71906 * 25 9 8 45 45 H 1.08004 * 119.97067 * 180.22662 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0255 -0.0002 6 6 4.5181 -2.3307 -0.0002 7 6 4.8627 -2.9286 -1.1983 8 6 5.5538 -4.1248 -1.2012 9 6 5.9026 -4.7258 -0.0004 10 8 6.5829 -5.9022 -0.0005 11 6 6.9091 -6.4631 1.2728 12 6 7.6574 -7.7562 1.0753 13 8 7.8889 -8.1577 -0.0455 14 7 8.0692 -8.4665 2.1441 15 6 8.7971 -9.7233 1.9521 16 6 9.1463 -10.3239 3.3152 17 6 9.8945 -11.6170 3.1177 18 1 10.1000 -11.9750 2.1196 19 6 10.3157 -12.3437 4.2111 20 7 10.0650 -11.9080 5.4264 21 14 11.2438 -13.9462 3.9662 22 1 12.4926 -13.6840 3.2069 23 1 11.5826 -14.5291 5.2894 24 1 10.3942 -14.8992 3.2078 25 6 5.5512 -4.1264 1.2004 26 6 4.8646 -2.9276 1.1978 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.9971 -1.8771 -0.8892 31 1 1.9971 -1.8763 0.8907 32 1 4.0283 -0.4535 0.8893 33 1 4.0277 -0.4546 -0.8907 34 1 4.5913 -2.4602 -2.1329 35 1 5.8224 -4.5916 -2.1373 36 1 7.5335 -5.7637 1.8287 37 1 5.9926 -6.6547 1.8309 38 1 7.8844 -8.1452 3.0404 39 1 8.1735 -10.4229 1.3953 40 1 9.7138 -9.5307 1.3946 41 1 9.7699 -9.6242 3.8715 42 1 8.2297 -10.5164 3.8729 43 1 10.3617 -12.4191 6.1957 44 1 5.8175 -4.5947 2.1364 45 1 4.5940 -2.4588 2.1323 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342651149.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:39 Heat of formation + Delta-G solvation = -129.139318 kcal Electronic energy + Delta-G solvation = -24439.044703 eV Core-core repulsion = 20613.380509 eV Total energy + Delta-G solvation = -3825.664194 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46125 -40.62750 -40.24254 -38.57644 -36.61755 -34.85683 -34.53446 -32.23439 -31.84006 -31.55912 -29.94242 -28.84216 -26.52755 -25.03279 -23.88564 -22.91869 -22.03499 -21.50441 -20.42664 -19.36175 -18.55950 -18.22445 -17.46015 -17.14386 -16.94810 -16.61570 -16.46468 -16.11558 -16.08758 -15.96367 -15.70141 -15.11888 -14.83725 -14.80373 -14.49076 -14.29012 -14.00462 -13.70724 -13.61212 -13.23967 -13.12368 -12.96629 -12.93155 -12.82893 -12.55517 -12.32751 -12.24631 -12.08175 -11.87171 -11.73475 -11.64103 -11.47450 -10.91029 -10.60047 -10.58093 -10.10442 -9.94059 -9.04019 -8.24177 -6.34306 0.40215 0.43299 1.06641 1.42280 1.44220 1.49014 1.51578 1.59173 2.40234 2.73421 2.76264 3.10908 3.21765 3.59033 3.89118 3.92427 3.98782 4.08156 4.09664 4.11968 4.21786 4.40133 4.44663 4.47233 4.47771 4.52965 4.64225 4.70948 4.77421 4.84107 4.86898 4.98550 5.14262 5.21872 5.22313 5.23407 5.34189 5.40936 5.46547 5.58120 5.70243 5.77526 5.83545 6.15759 6.35715 6.55902 6.63245 6.78364 7.17247 7.34951 8.87156 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.036351 B = 0.001536 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.078181 B =18219.510132 C =18665.949188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.357 3.643 3 O -0.509 6.509 4 C -0.166 4.166 5 C -0.064 4.064 6 C -0.122 4.122 7 C -0.076 4.076 8 C -0.164 4.164 9 C 0.104 3.896 10 O -0.322 6.322 11 C 0.049 3.951 12 C 0.506 3.494 13 O -0.580 6.580 14 N -0.708 5.708 15 C 0.141 3.859 16 C 0.022 3.978 17 C -0.550 4.550 18 H 0.057 0.943 19 C 0.010 3.990 20 N -0.924 5.924 21 Si 0.963 3.037 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.269 1.269 25 C -0.209 4.209 26 C -0.077 4.077 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.416 0.584 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.012 0.988 42 H 0.013 0.987 43 H 0.266 0.734 44 H 0.149 0.851 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.979 24.131 -7.433 32.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.237 3.763 3 O -0.387 6.387 4 C -0.203 4.203 5 C -0.101 4.101 6 C -0.122 4.122 7 C -0.094 4.094 8 C -0.183 4.183 9 C 0.059 3.941 10 O -0.235 6.235 11 C -0.029 4.029 12 C 0.292 3.708 13 O -0.459 6.459 14 N -0.361 5.361 15 C 0.017 3.983 16 C -0.015 4.015 17 C -0.588 4.588 18 H 0.076 0.924 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.227 4.227 26 C -0.095 4.095 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.164 0.836 35 H 0.144 0.856 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.253 0.747 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.075 0.925 44 H 0.167 0.833 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.409 24.220 -8.202 32.103 hybrid contribution 0.685 -0.987 0.573 1.331 sum -18.724 23.233 -7.629 30.799 Atomic orbital electron populations 1.22311 0.92300 1.06401 1.05077 1.25202 0.93304 0.89911 0.67925 1.90424 1.73026 1.36887 1.38366 1.22248 0.94247 0.97084 1.06706 1.20275 0.93557 0.92884 1.03405 1.19903 1.01513 0.97770 0.93010 1.21045 0.96049 0.93354 0.98961 1.20619 1.03706 0.97671 0.96316 1.19360 0.93623 0.85470 0.95599 1.86116 1.71117 1.35451 1.30814 1.22572 1.02035 0.92706 0.85566 1.20757 0.79418 0.86063 0.84527 1.90704 1.57892 1.71643 1.25702 1.45938 1.57049 1.23714 1.09423 1.21268 0.94425 0.83458 0.99120 1.19142 0.96149 0.95024 0.91184 1.21443 1.36924 1.07338 0.93119 0.92431 1.25823 0.96768 1.01517 0.94804 1.70038 1.47377 1.40494 0.98452 0.85535 0.79096 0.79175 0.77471 1.19481 1.20545 1.19418 1.21518 1.05148 0.99040 0.97016 1.21117 0.95832 0.93798 0.98706 0.87606 0.88685 0.88705 0.86496 0.86359 0.91112 0.91283 0.83576 0.85616 0.85979 0.85726 0.74727 0.93426 0.93516 0.96959 0.96902 0.92532 0.83343 0.83539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.77 10.33 71.23 0.74 -0.04 16 2 C 0.36 3.56 7.27 29.10 0.21 3.77 16 3 O -0.51 -9.79 16.72 -1.46 -0.02 -9.82 16 4 C -0.17 -1.12 5.53 29.85 0.17 -0.96 16 5 C -0.06 -0.73 4.63 29.85 0.14 -0.59 16 6 C -0.12 -1.67 5.13 -19.85 -0.10 -1.78 16 7 C -0.08 -1.17 9.69 22.25 0.22 -0.96 16 8 C -0.16 -3.38 9.99 22.37 0.22 -3.16 16 9 C 0.10 2.33 6.69 22.51 0.15 2.48 16 10 O -0.32 -8.93 9.67 -73.35 -0.71 -9.64 16 11 C 0.05 1.08 5.22 71.24 0.37 1.45 16 12 C 0.51 16.56 7.91 87.66 0.69 17.25 16 13 O -0.58 -25.13 16.50 16.00 0.26 -24.87 16 14 N -0.71 -22.92 5.56 -463.05 -2.57 -25.49 16 15 C 0.14 5.89 5.61 86.38 0.48 6.38 16 16 C 0.02 1.10 5.09 29.85 0.15 1.25 16 17 C -0.55 -30.25 9.11 25.60 0.23 -30.01 16 18 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.01 0.55 5.46 84.66 0.46 1.01 16 20 N -0.92 -53.12 13.29 21.45 0.28 -52.84 16 21 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 22 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 C -0.21 -3.46 9.04 22.37 0.20 -3.25 16 26 C -0.08 -1.05 9.69 22.25 0.22 -0.83 16 27 H 0.11 -0.08 8.00 -2.39 -0.02 -0.10 16 28 H 0.09 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.90 8.04 -2.39 -0.02 0.88 16 33 H 0.07 0.89 8.04 -2.39 -0.02 0.88 16 34 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 36 H 0.12 1.94 7.67 -2.39 -0.02 1.92 16 37 H 0.13 1.92 7.65 -2.39 -0.02 1.90 16 38 H 0.42 10.62 8.47 -92.71 -0.79 9.83 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 43 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 45 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -76.98 388.53 4.03 -72.95 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.20 Total: 12.58 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: 4.55 Total: -7.98 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -2.29 Total: -78.33 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -0.47 Total: -44.32 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -76.98 4.03 -72.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342651149.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.185 kcal (2) G-P(sol) polarization free energy of solvation -76.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds