Wall clock time and date at job start Tue Mar 31 2020 12:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42907 * 109.46738 * 2 1 4 4 C 1.35983 * 116.99771 * 180.02562 * 3 2 1 5 5 C 1.38726 * 120.06952 * 359.97438 * 4 3 2 6 6 C 1.37942 * 119.89989 * 179.97438 * 5 4 3 7 7 C 1.39133 * 120.29551 * 0.04718 * 6 5 4 8 8 C 1.38358 * 119.77957 * 0.11815 * 7 6 5 9 9 C 1.38494 * 119.88252 * 359.75923 * 8 7 6 10 10 C 1.50783 * 121.40274 * 179.51171 * 8 7 6 11 11 C 1.53065 * 109.69421 * 17.87550 * 10 8 7 12 12 H 1.09002 * 109.70157 * 71.45879 * 11 10 8 13 13 C 1.50699 * 109.72974 * 192.03933 * 11 10 8 14 14 O 1.21280 * 120.00369 * 359.41817 * 13 11 10 15 15 N 1.34778 * 119.99758 * 179.41594 * 13 11 10 16 16 C 1.46500 * 120.00211 * 180.02562 * 15 13 11 17 17 C 1.52999 * 109.47556 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47355 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99967 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00115 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00144 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46914 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47125 * 120.00009 * 22 20 18 25 25 H 1.48496 * 109.47487 * 240.00093 * 22 20 18 26 26 C 1.53409 * 108.29231 * 311.76021 * 11 10 8 27 27 O 1.35944 * 118.43866 * 180.17191 * 7 6 5 28 28 H 1.09001 * 109.47324 * 60.00515 * 1 2 3 29 29 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47550 * 299.99944 * 1 2 3 31 31 H 1.08996 * 109.47336 * 240.00510 * 2 1 3 32 32 H 1.08994 * 109.47480 * 119.99849 * 2 1 3 33 33 H 1.07997 * 120.04887 * 359.96588 * 5 4 3 34 34 H 1.07996 * 119.85347 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.86007 * 180.15996 * 9 8 7 36 36 H 1.08998 * 109.43031 * 257.80359 * 10 8 7 37 37 H 1.08999 * 109.42899 * 137.94416 * 10 8 7 38 38 H 0.97002 * 119.99902 * 359.97438 * 15 13 11 39 39 H 1.08998 * 109.46989 * 300.00250 * 16 15 13 40 40 H 1.09002 * 109.46881 * 59.99727 * 16 15 13 41 41 H 1.08998 * 109.46637 * 300.00359 * 17 16 15 42 42 H 1.09001 * 109.46867 * 59.99634 * 17 16 15 43 43 H 0.96992 * 120.00086 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.68275 * 184.44988 * 26 11 10 45 45 H 1.08999 * 109.68098 * 304.96961 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3543 1.5256 -0.0005 5 6 4.2008 0.4265 -0.0005 6 6 5.5677 0.6113 -0.0016 7 6 6.1023 1.8958 -0.0017 8 6 5.2577 2.9916 0.0017 9 6 3.8854 2.8051 0.0002 10 6 5.7973 4.3996 0.0127 11 6 7.2644 4.3930 -0.4238 12 1 7.3294 4.1800 -1.4909 13 6 7.8871 5.7346 -0.1349 14 8 7.2211 6.6179 0.3621 15 7 9.1843 5.9527 -0.4287 16 6 9.7899 7.2567 -0.1473 17 6 11.2593 7.2392 -0.5731 18 6 11.8824 8.5802 -0.2830 19 1 11.2895 9.3667 0.1603 20 6 13.2094 8.8034 -0.5835 21 7 13.9313 7.8460 -1.1238 22 14 13.9816 10.4660 -0.2247 23 1 12.9645 11.3642 0.3787 24 1 15.1122 10.2926 0.7223 25 1 14.4820 11.0627 -1.4890 26 6 7.9972 3.3016 0.3669 27 8 7.4547 2.0342 -0.0064 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7901 -0.5724 0.0005 34 1 6.2260 -0.2449 -0.0020 35 1 3.2264 3.6607 0.0003 36 1 5.7203 4.8096 1.0197 37 1 5.2172 5.0156 -0.6744 38 1 9.7171 5.2461 -0.8259 39 1 9.2603 8.0307 -0.7027 40 1 9.7230 7.4655 0.9204 41 1 11.7892 6.4650 -0.0180 42 1 11.3257 7.0305 -1.6409 43 1 14.8647 8.0031 -1.3355 44 1 9.0611 3.3293 0.1315 45 1 7.8533 3.4630 1.4352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342659535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:17 Heat of formation + Delta-G solvation = -108.443882 kcal Electronic energy + Delta-G solvation = -25659.303671 eV Core-core repulsion = 21834.536898 eV Total energy + Delta-G solvation = -3824.766773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17237 -39.86394 -38.95452 -36.73732 -35.06541 -34.23465 -32.91328 -32.21906 -31.14107 -29.52426 -29.36325 -25.98714 -25.30894 -24.39344 -23.29539 -22.74851 -21.15429 -20.72130 -19.67554 -18.17978 -17.98313 -17.15402 -16.84686 -16.44025 -16.31811 -15.45369 -15.21736 -15.06376 -14.70099 -14.49035 -14.40116 -14.07476 -13.75918 -13.68946 -13.38343 -13.19325 -13.13582 -12.94508 -12.77313 -12.60395 -12.33905 -11.90727 -11.63680 -11.25092 -11.23383 -11.17457 -11.07617 -10.78913 -10.64861 -10.51149 -10.39157 -9.86327 -9.52149 -9.23628 -9.07275 -8.62723 -8.41774 -7.93433 -6.12656 -4.15705 0.98913 1.22807 2.78837 2.85659 3.11217 3.26408 3.34010 3.38174 3.44797 3.55929 4.36555 4.38196 4.42776 4.47656 4.50593 4.60437 4.65046 4.76343 4.82944 4.84918 5.00431 5.13017 5.17605 5.24622 5.31438 5.35480 5.36297 5.47755 5.57723 5.68985 5.72610 5.76799 5.91222 6.07774 6.20251 6.26629 6.28202 6.31403 6.67035 6.80204 7.05597 7.29449 7.46629 7.56392 7.84612 7.88585 8.22896 8.50260 8.90389 9.49552 10.98883 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.042519 B = 0.001926 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.363774 B =14534.076776 C =15072.922414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.099 3.901 5 C -0.178 4.178 6 C -0.107 4.107 7 C 0.094 3.906 8 C -0.112 4.112 9 C -0.116 4.116 10 C -0.060 4.060 11 C -0.148 4.148 12 H 0.111 0.889 13 C 0.514 3.486 14 O -0.543 6.543 15 N -0.720 5.720 16 C 0.120 3.880 17 C 0.011 3.989 18 C -0.522 4.522 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.897 3.103 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.073 3.927 27 O -0.310 6.310 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.132 0.868 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.398 0.602 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.262 0.738 44 H 0.116 0.884 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.065 -19.271 1.368 29.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.054 3.946 5 C -0.197 4.197 6 C -0.126 4.126 7 C 0.049 3.951 8 C -0.113 4.113 9 C -0.135 4.135 10 C -0.097 4.097 11 C -0.170 4.170 12 H 0.129 0.871 13 C 0.299 3.701 14 O -0.421 6.421 15 N -0.369 5.369 16 C -0.002 4.002 17 C -0.026 4.026 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.003 4.003 27 O -0.224 6.224 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.232 0.768 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.041 0.959 42 H 0.041 0.959 43 H 0.071 0.929 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -22.360 -18.641 1.620 29.157 hybrid contribution 0.874 0.470 -0.093 0.997 sum -21.486 -18.171 1.527 28.181 Atomic orbital electron populations 1.21774 0.92792 1.02805 1.03581 1.22755 0.95848 0.82153 1.01296 1.86078 1.18869 1.29025 1.89216 1.18747 0.82345 0.93863 0.99648 1.20989 0.93198 0.98200 1.07296 1.20353 0.94378 0.95115 1.02705 1.18605 0.82675 0.93164 1.00665 1.19684 0.92860 0.94955 1.03781 1.20113 0.93702 0.95207 1.04489 1.20323 0.93185 0.91941 1.04272 1.22028 0.97073 0.94568 1.03311 0.87085 1.20085 0.82520 0.88745 0.78781 1.90690 1.61813 1.45634 1.43948 1.46385 1.10397 1.17357 1.62802 1.21769 0.96400 0.81756 1.00229 1.19338 0.87768 0.98258 0.97232 1.21080 0.95542 0.97891 1.41583 0.92184 1.24996 0.97232 0.97117 0.94925 1.69960 1.08123 1.32456 1.42671 0.86455 0.79256 0.83828 0.78024 1.19585 1.20921 1.20920 1.22951 0.98203 0.80235 0.98891 1.86042 1.17699 1.34517 1.84129 0.91502 0.90423 0.91501 0.92110 0.92125 0.85023 0.84842 0.84790 0.88764 0.89063 0.76791 0.92427 0.92396 0.95871 0.95877 0.92868 0.86626 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 10.28 37.16 0.38 -0.35 16 2 C 0.05 0.35 5.46 37.16 0.20 0.55 16 3 O -0.32 -3.14 10.14 -19.69 -0.20 -3.34 16 4 C 0.10 1.04 6.68 -39.29 -0.26 0.78 16 5 C -0.18 -1.65 9.03 -39.51 -0.36 -2.01 16 6 C -0.11 -1.09 9.93 -39.36 -0.39 -1.48 16 7 C 0.09 1.10 6.47 -39.21 -0.25 0.85 16 8 C -0.11 -1.30 5.75 -104.44 -0.60 -1.90 16 9 C -0.12 -1.29 9.60 -39.38 -0.38 -1.67 16 10 C -0.06 -0.72 4.66 -27.81 -0.13 -0.85 16 11 C -0.15 -1.79 2.76 -91.53 -0.25 -2.04 16 12 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 13 C 0.51 8.11 7.16 -10.99 -0.08 8.03 16 14 O -0.54 -10.55 15.80 5.56 0.09 -10.46 16 15 N -0.72 -11.76 5.44 -60.29 -0.33 -12.09 16 16 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 17 C 0.01 0.28 5.09 -27.89 -0.14 0.13 16 18 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 19 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.07 0.80 6.26 37.37 0.23 1.04 16 27 O -0.31 -3.70 10.27 -19.57 -0.20 -3.90 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 32 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 33 H 0.13 0.88 6.31 -52.49 -0.33 0.55 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.09 1.20 7.70 -51.93 -0.40 0.80 16 37 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 5.55 7.91 -40.82 -0.32 5.23 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.12 1.11 7.53 -51.93 -0.39 0.72 16 45 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -32.10 373.46 -8.61 -40.71 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.86 Total: 1.84 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -2.46 Total: -9.50 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.41 Total: -37.12 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.31 Total: -17.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.10 -8.61 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342659535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.732 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds