Wall clock time and date at job start Tue Mar 31 2020 12:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42907 * 109.46738 * 2 1 4 4 C 1.35983 * 116.99771 * 180.02562 * 3 2 1 5 5 C 1.38726 * 120.06952 * 359.97438 * 4 3 2 6 6 C 1.37942 * 119.89989 * 179.97438 * 5 4 3 7 7 C 1.39133 * 120.29551 * 0.04718 * 6 5 4 8 8 C 1.38358 * 119.77957 * 0.11815 * 7 6 5 9 9 C 1.38494 * 119.88252 * 359.75923 * 8 7 6 10 10 C 1.50783 * 121.40274 * 179.51171 * 8 7 6 11 11 C 1.53065 * 109.69421 * 17.87550 * 10 8 7 12 12 H 1.09002 * 109.70157 * 71.45879 * 11 10 8 13 13 C 1.50699 * 109.72974 * 192.03933 * 11 10 8 14 14 O 1.21280 * 120.00369 * 359.41817 * 13 11 10 15 15 N 1.34778 * 119.99758 * 179.41594 * 13 11 10 16 16 C 1.46500 * 120.00211 * 180.02562 * 15 13 11 17 17 C 1.52999 * 109.47556 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47355 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99967 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00115 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00144 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00178 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46914 * 0.02562 * 22 20 18 24 24 H 1.48493 * 109.47125 * 120.00009 * 22 20 18 25 25 H 1.48496 * 109.47487 * 240.00093 * 22 20 18 26 26 C 1.53409 * 108.29231 * 311.76021 * 11 10 8 27 27 O 1.35944 * 118.43866 * 180.17191 * 7 6 5 28 28 H 1.09001 * 109.47324 * 60.00515 * 1 2 3 29 29 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47550 * 299.99944 * 1 2 3 31 31 H 1.08996 * 109.47336 * 240.00510 * 2 1 3 32 32 H 1.08994 * 109.47480 * 119.99849 * 2 1 3 33 33 H 1.07997 * 120.04887 * 359.96588 * 5 4 3 34 34 H 1.07996 * 119.85347 * 180.02562 * 6 5 4 35 35 H 1.08000 * 119.86007 * 180.15996 * 9 8 7 36 36 H 1.08998 * 109.43031 * 257.80359 * 10 8 7 37 37 H 1.08999 * 109.42899 * 137.94416 * 10 8 7 38 38 H 0.97002 * 119.99902 * 359.97438 * 15 13 11 39 39 H 1.08998 * 109.46989 * 300.00250 * 16 15 13 40 40 H 1.09002 * 109.46881 * 59.99727 * 16 15 13 41 41 H 1.08998 * 109.46637 * 300.00359 * 17 16 15 42 42 H 1.09001 * 109.46867 * 59.99634 * 17 16 15 43 43 H 0.96992 * 120.00086 * 179.97438 * 21 20 18 44 44 H 1.08996 * 109.68275 * 184.44988 * 26 11 10 45 45 H 1.08999 * 109.68098 * 304.96961 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3543 1.5256 -0.0005 5 6 4.2008 0.4265 -0.0005 6 6 5.5677 0.6113 -0.0016 7 6 6.1023 1.8958 -0.0017 8 6 5.2577 2.9916 0.0017 9 6 3.8854 2.8051 0.0002 10 6 5.7973 4.3996 0.0127 11 6 7.2644 4.3930 -0.4238 12 1 7.3294 4.1800 -1.4909 13 6 7.8871 5.7346 -0.1349 14 8 7.2211 6.6179 0.3621 15 7 9.1843 5.9527 -0.4287 16 6 9.7899 7.2567 -0.1473 17 6 11.2593 7.2392 -0.5731 18 6 11.8824 8.5802 -0.2830 19 1 11.2895 9.3667 0.1603 20 6 13.2094 8.8034 -0.5835 21 7 13.9313 7.8460 -1.1238 22 14 13.9816 10.4660 -0.2247 23 1 12.9645 11.3642 0.3787 24 1 15.1122 10.2926 0.7223 25 1 14.4820 11.0627 -1.4890 26 6 7.9972 3.3016 0.3669 27 8 7.4547 2.0342 -0.0064 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.7901 -0.5724 0.0005 34 1 6.2260 -0.2449 -0.0020 35 1 3.2264 3.6607 0.0003 36 1 5.7203 4.8096 1.0197 37 1 5.2172 5.0156 -0.6744 38 1 9.7171 5.2461 -0.8259 39 1 9.2603 8.0307 -0.7027 40 1 9.7230 7.4655 0.9204 41 1 11.7892 6.4650 -0.0180 42 1 11.3257 7.0305 -1.6409 43 1 14.8647 8.0031 -1.3355 44 1 9.0611 3.3293 0.1315 45 1 7.8533 3.4630 1.4352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342659535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:16 Heat of formation + Delta-G solvation = -128.229906 kcal Electronic energy + Delta-G solvation = -25660.161657 eV Core-core repulsion = 21834.536898 eV Total energy + Delta-G solvation = -3825.624759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.08067 -40.84349 -40.00664 -37.51795 -36.69371 -35.26031 -34.83202 -32.72645 -32.26936 -31.08272 -30.16822 -27.20535 -26.58216 -25.50750 -24.10653 -23.58816 -22.83577 -21.82040 -20.76148 -19.00673 -18.82848 -18.55921 -18.17963 -17.66263 -17.00808 -16.62072 -16.58592 -16.46139 -16.01420 -15.60162 -15.52000 -15.20954 -14.62522 -14.57951 -14.36629 -14.33481 -14.16953 -14.02628 -13.82359 -13.54899 -13.23715 -13.19003 -12.95822 -12.59629 -12.51837 -12.34560 -12.25614 -12.02027 -11.96993 -11.69671 -11.57908 -11.43442 -11.23443 -10.85592 -10.60945 -10.06925 -9.88324 -8.74129 -8.24212 -6.34297 0.19553 0.41240 1.40840 1.42383 1.50252 1.54872 2.04289 2.27514 2.33016 2.44063 2.67947 3.10896 3.38671 3.50261 3.63396 3.77696 3.86303 3.97685 4.09732 4.11712 4.17551 4.30841 4.40297 4.41250 4.46861 4.49572 4.50392 4.62945 4.72835 4.84540 4.86029 4.89592 4.97047 4.98114 5.01197 5.21773 5.25563 5.33789 5.36893 5.48029 5.54150 5.58885 5.78762 6.16212 6.29151 6.51891 6.54759 6.79222 7.18002 7.35181 8.87583 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.042519 B = 0.001926 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.363774 B =14534.076776 C =15072.922414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.094 3.906 5 C -0.171 4.171 6 C -0.108 4.108 7 C 0.073 3.927 8 C -0.119 4.119 9 C -0.131 4.131 10 C -0.057 4.057 11 C -0.135 4.135 12 H 0.127 0.873 13 C 0.519 3.481 14 O -0.579 6.579 15 N -0.713 5.713 16 C 0.140 3.860 17 C 0.021 3.979 18 C -0.547 4.547 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.925 5.925 22 Si 0.963 3.037 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.278 1.278 26 C 0.074 3.926 27 O -0.313 6.313 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.160 0.840 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.412 0.588 39 H 0.047 0.953 40 H 0.049 0.951 41 H 0.012 0.988 42 H 0.009 0.991 43 H 0.265 0.735 44 H 0.132 0.868 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.669 -20.687 1.343 30.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.049 3.951 5 C -0.190 4.190 6 C -0.126 4.126 7 C 0.029 3.971 8 C -0.120 4.120 9 C -0.150 4.150 10 C -0.094 4.094 11 C -0.156 4.156 12 H 0.145 0.855 13 C 0.306 3.694 14 O -0.460 6.460 15 N -0.364 5.364 16 C 0.016 3.984 17 C -0.017 4.017 18 C -0.585 4.585 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.788 3.212 23 H -0.190 1.190 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.001 4.001 27 O -0.228 6.228 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.248 0.752 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.030 0.970 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.149 0.851 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -22.977 -20.090 1.587 30.563 hybrid contribution 0.958 0.828 -0.086 1.269 sum -22.019 -19.262 1.501 29.294 Atomic orbital electron populations 1.21809 0.91801 1.04129 1.03032 1.23069 0.96721 0.80779 1.02441 1.86074 1.18458 1.31322 1.89070 1.18886 0.82995 0.93984 0.99256 1.21288 0.92715 0.99175 1.05795 1.20639 0.95054 0.95059 1.01854 1.18853 0.82591 0.93891 1.01766 1.19613 0.93166 0.94525 1.04701 1.20223 0.93661 0.95962 1.05120 1.20249 0.93106 0.92519 1.03523 1.21941 0.96901 0.92333 1.04436 0.85513 1.20622 0.81726 0.89664 0.77389 1.90677 1.62557 1.47245 1.45480 1.46171 1.10923 1.16291 1.63034 1.21256 0.94292 0.83547 0.99298 1.19155 0.89727 0.96710 0.96081 1.21501 0.96171 0.99161 1.41667 0.92361 1.25839 0.97780 1.00801 0.94650 1.70055 1.08550 1.34387 1.43476 0.85419 0.78348 0.79385 0.78029 1.19037 1.20262 1.20316 1.22996 0.98817 0.79705 0.98621 1.86040 1.17933 1.34445 1.84352 0.92046 0.88145 0.92065 0.90883 0.90922 0.82210 0.83037 0.84693 0.90025 0.89165 0.75179 0.93498 0.93246 0.96987 0.97226 0.92571 0.85058 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.28 71.98 0.74 -0.44 16 2 C 0.04 0.47 5.46 71.98 0.39 0.86 16 3 O -0.33 -6.21 10.14 -93.36 -0.95 -7.16 16 4 C 0.09 1.86 6.68 22.46 0.15 2.01 16 5 C -0.17 -2.79 9.03 22.32 0.20 -2.59 16 6 C -0.11 -1.96 9.93 22.41 0.22 -1.74 16 7 C 0.07 1.64 6.47 22.51 0.15 1.78 16 8 C -0.12 -2.71 5.75 -19.75 -0.11 -2.83 16 9 C -0.13 -2.86 9.60 22.40 0.22 -2.65 16 10 C -0.06 -1.35 4.66 29.90 0.14 -1.21 16 11 C -0.13 -3.15 2.76 -11.38 -0.03 -3.18 16 12 H 0.13 2.62 8.14 -2.39 -0.02 2.60 16 13 C 0.52 16.26 7.16 87.66 0.63 16.89 16 14 O -0.58 -22.75 15.80 -3.03 -0.05 -22.80 16 15 N -0.71 -23.09 5.44 -463.06 -2.52 -25.61 16 16 C 0.14 5.78 5.61 86.38 0.48 6.26 16 17 C 0.02 1.02 5.09 29.85 0.15 1.17 16 18 C -0.55 -30.09 9.11 25.60 0.23 -29.86 16 19 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 20 C 0.01 0.45 5.46 84.65 0.46 0.92 16 21 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 22 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.07 1.55 6.26 72.12 0.45 2.01 16 27 O -0.31 -7.03 10.27 -92.92 -0.95 -7.99 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 32 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 33 H 0.16 1.60 6.31 -2.91 -0.02 1.58 16 34 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 35 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.08 2.14 7.70 -2.39 -0.02 2.12 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.41 11.16 7.91 -92.71 -0.73 10.42 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.13 2.30 7.53 -2.39 -0.02 2.29 16 45 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -68.46 373.46 2.58 -65.88 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.26 Total: 18.23 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.47 Total: -12.60 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.23 Total: -78.85 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -1.95 Total: -37.95 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Total: -68.46 2.58 -65.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342659535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.351 kcal (2) G-P(sol) polarization free energy of solvation -68.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds