Wall clock time and date at job start Tue Mar 31 2020 13:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45194 * 109.47336 * 2 1 4 4 C 1.34224 * 117.00133 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00313 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.00355 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.47499 * 180.02562 * 6 4 3 8 8 H 1.09002 * 109.46980 * 55.00080 * 7 6 4 9 9 C 1.52998 * 109.47153 * 175.00467 * 7 6 4 10 10 N 1.46505 * 109.47139 * 295.00326 * 7 6 4 11 11 C 1.46493 * 119.99812 * 299.99796 * 10 7 6 12 12 C 1.34776 * 119.99546 * 119.99870 * 10 7 6 13 13 O 1.21579 * 120.00645 * 355.24948 * 12 10 7 14 14 C 1.47646 * 119.99759 * 175.24689 * 12 10 7 15 15 C 1.39998 * 119.89840 * 221.83306 * 14 12 10 16 16 C 1.36322 * 120.10922 * 179.76122 * 15 14 12 17 17 C 1.40884 * 119.89037 * 0.51436 * 16 15 14 18 18 C 1.41104 * 120.10681 * 179.71886 * 17 16 15 19 19 H 1.07999 * 120.00182 * 161.76596 * 18 17 16 20 20 C 1.40228 * 120.00022 * 341.77099 * 18 17 16 21 21 N 1.30652 * 119.99856 * 333.28810 * 20 18 17 22 22 Si 1.86791 * 120.00246 * 153.28447 * 20 18 17 23 23 H 1.48502 * 109.47443 * 94.99636 * 22 20 18 24 24 H 1.48504 * 109.47300 * 214.99405 * 22 20 18 25 25 H 1.48506 * 109.47293 * 334.99277 * 22 20 18 26 26 C 1.40888 * 119.79195 * 359.73970 * 17 16 15 27 27 C 1.36318 * 119.89316 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47032 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47166 * 299.99993 * 1 2 3 30 30 H 1.09005 * 109.46757 * 60.00040 * 1 2 3 31 31 H 1.09005 * 109.47109 * 239.99937 * 2 1 3 32 32 H 1.09002 * 109.46934 * 120.00461 * 2 1 3 33 33 H 1.09000 * 109.46810 * 60.00257 * 6 4 3 34 34 H 1.09001 * 109.47471 * 300.00933 * 6 4 3 35 35 H 1.08992 * 109.47458 * 59.99898 * 9 7 6 36 36 H 1.09005 * 109.47153 * 299.99943 * 9 7 6 37 37 H 1.09001 * 109.47380 * 180.02562 * 9 7 6 38 38 H 1.09005 * 109.47097 * 95.63371 * 11 10 7 39 39 H 1.09005 * 109.46778 * 215.62665 * 11 10 7 40 40 H 1.08999 * 109.47779 * 335.62742 * 11 10 7 41 41 H 1.08002 * 119.95073 * 0.02562 * 15 14 12 42 42 H 1.08000 * 120.05864 * 180.23124 * 16 15 14 43 43 H 0.96995 * 119.99889 * 179.97438 * 21 20 18 44 44 H 1.08001 * 120.05955 * 179.97438 * 26 17 16 45 45 H 1.08000 * 119.95146 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 6 5.4487 2.8572 0.0001 8 1 5.7808 2.2492 -0.8414 9 6 6.0333 4.2655 -0.1260 10 7 5.9058 2.2492 1.2522 11 6 5.5845 2.8819 2.5338 12 6 6.6218 1.1077 1.2249 13 8 6.8150 0.5362 0.1693 14 6 7.1718 0.5511 2.4770 15 6 8.4705 0.0287 2.4972 16 6 8.9843 -0.4818 3.6521 17 6 8.2023 -0.4930 4.8239 18 6 8.7275 -1.0257 6.0203 19 1 8.2707 -0.7793 6.9674 20 6 9.8426 -1.8749 5.9796 21 7 10.0837 -2.5857 4.9102 22 14 10.9833 -1.9900 7.4542 23 1 10.5817 -3.1411 8.3022 24 1 12.3794 -2.1833 6.9862 25 1 10.8960 -0.7371 8.2466 26 6 6.8939 0.0291 4.7973 27 6 6.3909 0.5427 3.6391 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5845 3.4699 0.8895 34 1 3.5853 3.4691 -0.8904 35 1 5.7013 4.8734 0.7155 36 1 5.6932 4.7179 -1.0576 37 1 7.1218 4.2084 -0.1264 38 1 4.6891 2.4217 2.9519 39 1 6.4176 2.7484 3.2239 40 1 5.4076 3.9463 2.3794 41 1 9.0679 0.0340 1.5975 42 1 9.9876 -0.8812 3.6677 43 1 10.8552 -3.1729 4.8818 44 1 6.2905 0.0223 5.6929 45 1 5.3879 0.9428 3.6176 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343445469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:50 Heat of formation + Delta-G solvation = -104.144294 kcal Electronic energy + Delta-G solvation = -27133.645219 eV Core-core repulsion = 23309.064890 eV Total energy + Delta-G solvation = -3824.580329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50688 -39.26290 -37.31127 -36.49266 -35.56749 -33.93128 -32.41933 -31.72753 -29.93544 -29.35373 -28.36498 -26.52724 -25.83639 -23.60481 -22.46545 -21.31704 -20.99435 -20.07319 -18.65004 -17.57627 -17.49483 -16.86877 -16.46852 -16.15632 -15.64338 -15.30276 -14.85900 -14.31579 -14.14172 -13.70415 -13.62804 -13.25439 -13.01311 -12.94470 -12.91183 -12.48908 -12.32662 -12.23225 -12.03042 -11.91527 -11.84469 -11.76854 -11.65734 -11.59976 -11.18810 -11.15499 -10.90689 -10.84091 -10.57016 -10.50918 -10.20692 -10.01445 -9.49586 -9.14527 -8.73576 -8.14381 -7.60488 -7.50687 -7.02189 -4.48518 2.40351 2.46676 2.69269 2.94525 2.98352 3.05929 3.10253 3.56778 3.77745 3.86492 4.50502 4.65534 4.68698 4.82144 4.90031 5.09037 5.18401 5.23997 5.32110 5.38027 5.42261 5.58814 5.60888 5.63775 5.69528 5.74043 5.79519 5.83373 6.06975 6.14763 6.22058 6.32037 6.34891 6.55876 6.85391 6.89185 7.09685 7.15439 7.22170 7.51114 7.72488 7.88982 7.94304 7.95815 8.11921 8.22927 8.49484 8.71662 8.85578 9.19660 9.90250 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017739 B = 0.003115 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.034942 B = 8986.136142 C = 9726.017033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.446 3.554 5 O -0.468 6.468 6 C -0.122 4.122 7 C 0.147 3.853 8 H 0.107 0.893 9 C -0.159 4.159 10 N -0.619 5.619 11 C 0.081 3.919 12 C 0.585 3.415 13 O -0.548 6.548 14 C -0.278 4.278 15 C -0.041 4.041 16 C -0.190 4.190 17 C 0.125 3.875 18 C -0.448 4.448 19 H 0.084 0.916 20 C 0.079 3.921 21 N -0.759 5.759 22 Si 0.906 3.094 23 H -0.268 1.268 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.241 4.241 27 C -0.052 4.052 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.118 0.882 43 H 0.287 0.713 44 H 0.094 0.906 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 10.902 -5.825 17.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.287 3.713 5 O -0.352 6.352 6 C -0.161 4.161 7 C 0.042 3.958 8 H 0.125 0.875 9 C -0.217 4.217 10 N -0.354 5.354 11 C -0.062 4.062 12 C 0.379 3.621 13 O -0.426 6.426 14 C -0.283 4.283 15 C -0.060 4.060 16 C -0.210 4.210 17 C 0.122 3.878 18 C -0.475 4.475 19 H 0.102 0.898 20 C -0.144 4.144 21 N -0.381 5.381 22 Si 0.729 3.271 23 H -0.193 1.193 24 H -0.197 1.197 25 H -0.180 1.180 26 C -0.261 4.261 27 C -0.070 4.070 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.136 0.864 43 H 0.098 0.902 44 H 0.112 0.888 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.534 10.050 -6.496 16.620 hybrid contribution 0.346 -0.352 0.724 0.876 sum -11.188 9.698 -5.772 15.891 Atomic orbital electron populations 1.21789 0.92862 1.02842 1.03212 1.22962 0.95005 0.80499 1.02766 1.86458 1.25163 1.32217 1.84842 1.23704 0.80483 0.93187 0.73972 1.90882 1.59624 1.42468 1.42207 1.21873 0.97072 0.91487 1.05647 1.20728 0.89786 0.95003 0.90272 0.87509 1.22121 1.02137 0.95491 1.01915 1.47732 1.56359 1.25997 1.05301 1.21912 1.01446 0.96582 0.86296 1.18594 0.75651 0.78424 0.89463 1.90631 1.59349 1.59224 1.33357 1.18820 0.98488 1.18201 0.92742 1.20329 0.93491 0.95310 0.96865 1.20931 1.00748 1.06405 0.92867 1.17689 0.89891 0.87538 0.92702 1.19768 1.10014 1.23070 0.94644 0.89815 1.26116 0.97673 0.93125 0.97469 1.69817 1.24357 1.14982 1.28981 0.86327 0.79272 0.79989 0.81463 1.19289 1.19703 1.18002 1.20560 0.96612 1.11938 0.96973 1.20513 0.96955 0.97177 0.92384 0.90367 0.91584 0.91706 0.91397 0.91216 0.87824 0.87311 0.92100 0.91610 0.91511 0.93707 0.89658 0.92187 0.89022 0.86445 0.90181 0.88799 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.85 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.37 -4.86 10.22 -39.24 -0.40 -5.26 16 4 C 0.45 6.67 7.82 36.01 0.28 6.95 16 5 O -0.47 -9.27 13.27 -24.26 -0.32 -9.59 16 6 C -0.12 -1.36 5.24 -27.88 -0.15 -1.50 16 7 C 0.15 2.03 2.25 -67.93 -0.15 1.88 16 8 H 0.11 1.80 6.72 -51.93 -0.35 1.45 16 9 C -0.16 -1.62 9.18 37.16 0.34 -1.28 16 10 N -0.62 -10.61 2.25 -175.12 -0.39 -11.01 16 11 C 0.08 1.14 7.86 59.84 0.47 1.61 16 12 C 0.58 13.14 6.30 -12.42 -0.08 13.07 16 13 O -0.55 -14.07 15.29 -9.97 -0.15 -14.22 16 14 C -0.28 -6.66 5.16 -104.73 -0.54 -7.20 16 15 C -0.04 -1.03 9.58 -39.61 -0.38 -1.41 16 16 C -0.19 -5.01 8.72 -39.27 -0.34 -5.35 16 17 C 0.12 3.27 5.62 -106.81 -0.60 2.67 16 18 C -0.45 -11.42 9.01 -37.75 -0.34 -11.76 16 19 H 0.08 2.02 7.97 -52.49 -0.42 1.60 16 20 C 0.08 1.91 4.99 -17.31 -0.09 1.82 16 21 N -0.76 -19.04 11.10 55.56 0.62 -18.43 16 22 Si 0.91 17.63 29.63 -169.99 -5.04 12.59 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 25 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 26 C -0.24 -5.80 9.73 -39.27 -0.38 -6.18 16 27 C -0.05 -1.16 7.55 -39.61 -0.30 -1.46 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 33 H 0.10 0.96 7.51 -51.93 -0.39 0.57 16 34 H 0.11 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.53 6.67 -51.93 -0.35 0.18 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.04 0.62 6.82 -51.93 -0.35 0.26 16 39 H 0.08 1.36 6.03 -51.93 -0.31 1.05 16 40 H 0.06 0.63 6.44 -51.93 -0.33 0.30 16 41 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.12 3.14 6.03 -52.49 -0.32 2.83 16 43 H 0.29 6.45 8.29 -40.82 -0.34 6.11 16 44 H 0.09 2.09 8.06 -52.49 -0.42 1.66 16 45 H 0.09 1.85 5.54 -52.49 -0.29 1.56 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -32.75 367.84 -8.26 -41.01 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -6.47 Total: 7.41 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -1.64 Total: -8.05 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: 0.22 Total: -29.44 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -0.88 Total: -29.07 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.04 Total: 12.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.75 -8.26 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343445469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.129 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds