Wall clock time and date at job start Tue Mar 31 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45207 * 109.47030 * 2 1 4 4 C 1.34227 * 117.00282 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99656 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00279 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47428 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46831 * 305.00292 * 7 6 4 9 9 C 1.52998 * 109.47355 * 184.99956 * 7 6 4 10 10 N 1.46500 * 109.47005 * 64.99997 * 7 6 4 11 11 C 1.46498 * 120.00210 * 59.99991 * 10 7 6 12 12 C 1.34784 * 119.99550 * 240.00143 * 10 7 6 13 13 O 1.21585 * 120.00074 * 4.47110 * 12 10 7 14 14 C 1.47641 * 119.99601 * 184.46944 * 12 10 7 15 15 C 1.40015 * 119.89489 * 22.16492 * 14 12 10 16 16 C 1.36320 * 120.10328 * 179.71524 * 15 14 12 17 17 C 1.40890 * 119.89422 * 0.57388 * 16 15 14 18 18 C 1.41105 * 120.10370 * 179.67392 * 17 16 15 19 19 H 1.08003 * 119.99557 * 165.53806 * 18 17 16 20 20 C 1.40219 * 120.00360 * 345.54289 * 18 17 16 21 21 N 1.30643 * 120.00301 * 330.92427 * 20 18 17 22 22 Si 1.86800 * 120.00275 * 150.91823 * 20 18 17 23 23 H 1.48498 * 109.46988 * 94.99949 * 22 20 18 24 24 H 1.48502 * 109.47606 * 214.99949 * 22 20 18 25 25 H 1.48503 * 109.47317 * 335.00156 * 22 20 18 26 26 C 1.40886 * 119.79044 * 359.70267 * 17 16 15 27 27 C 1.36324 * 119.89392 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.46959 * 300.00106 * 1 2 3 29 29 H 1.08993 * 109.47533 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47368 * 240.00243 * 2 1 3 32 32 H 1.09001 * 109.47421 * 119.99716 * 2 1 3 33 33 H 1.09003 * 109.47122 * 59.99671 * 6 4 3 34 34 H 1.09006 * 109.47160 * 300.00118 * 6 4 3 35 35 H 1.08998 * 109.46974 * 300.00229 * 9 7 6 36 36 H 1.08997 * 109.47138 * 59.99602 * 9 7 6 37 37 H 1.08991 * 109.47309 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.46718 * 84.94319 * 11 10 7 39 39 H 1.08991 * 109.47172 * 324.94610 * 11 10 7 40 40 H 1.09004 * 109.47121 * 204.94041 * 11 10 7 41 41 H 1.07997 * 119.95112 * 0.02562 * 15 14 12 42 42 H 1.07998 * 120.05397 * 180.25349 * 16 15 14 43 43 H 0.96993 * 120.00864 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.05570 * 179.97438 * 26 17 16 45 45 H 1.07997 * 119.94360 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0023 8 1 5.7812 2.2500 0.8393 9 6 6.0331 4.2659 0.1228 10 7 5.9047 2.2489 -1.2544 11 6 5.5824 2.8810 -2.5362 12 6 6.6209 1.1075 -1.2271 13 8 6.8191 0.5393 -0.1706 14 6 7.1647 0.5470 -2.4801 15 6 7.3551 1.3775 -3.5911 16 6 7.8623 0.8657 -4.7483 17 6 8.1837 -0.5036 -4.8291 18 6 8.7026 -1.0394 -6.0269 19 1 9.1637 -2.0160 -6.0264 20 6 8.6195 -0.3039 -7.2178 21 7 7.6397 0.5416 -7.3965 22 14 9.9099 -0.5328 -8.5490 23 1 9.4252 -1.5238 -9.5430 24 1 10.1591 0.7655 -9.2255 25 1 11.1713 -1.0221 -7.9368 26 6 7.9849 -1.3364 -3.7102 27 6 7.4833 -0.8143 -2.5552 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5850 3.4700 0.8888 34 1 3.5843 3.4694 -0.8912 35 1 5.7004 4.8734 -0.7189 36 1 5.6937 4.7188 1.0543 37 1 7.1215 4.2089 0.1224 38 1 6.3240 3.6480 -2.7596 39 1 4.5942 3.3370 -2.4781 40 1 5.5895 2.1282 -3.3244 41 1 7.1045 2.4262 -3.5297 42 1 8.0127 1.5079 -5.6036 43 1 7.5819 1.0501 -8.2204 44 1 8.2294 -2.3868 -3.7675 45 1 7.3309 -1.4518 -1.6969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343445475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:52 Heat of formation + Delta-G solvation = -88.100061 kcal Electronic energy + Delta-G solvation = -27226.173573 eV Core-core repulsion = 23402.288974 eV Total energy + Delta-G solvation = -3823.884598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48491 -39.29892 -37.29378 -36.46069 -35.55933 -33.99064 -32.56682 -31.75038 -29.80895 -29.39226 -28.35428 -26.56558 -25.86172 -23.58974 -22.48631 -21.29214 -20.90793 -20.12359 -18.66807 -17.53665 -17.48657 -16.80328 -16.41181 -16.08663 -15.69102 -15.34784 -14.88251 -14.34652 -14.07182 -13.74530 -13.57453 -13.14992 -12.98364 -12.93398 -12.85892 -12.60080 -12.42179 -12.29044 -12.05356 -11.91387 -11.79434 -11.70261 -11.63610 -11.37904 -11.17424 -10.99222 -10.91834 -10.79358 -10.55852 -10.48238 -10.17496 -10.01032 -9.47812 -9.04237 -8.69295 -8.11138 -7.62102 -7.51827 -7.09531 -4.51651 2.38360 2.44946 2.72369 2.90266 2.94724 3.04218 3.11845 3.59248 3.73492 3.93145 4.53213 4.70483 4.72434 4.84334 4.92266 5.12076 5.20320 5.23794 5.33625 5.40966 5.55808 5.58826 5.62324 5.65992 5.71178 5.81339 5.82376 5.85452 6.14241 6.16414 6.26171 6.33315 6.42082 6.58929 6.79386 6.88289 7.07131 7.19950 7.23662 7.49801 7.73535 7.89956 7.94925 7.98009 8.11059 8.27489 8.45055 8.69009 8.84698 9.26669 9.80591 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.003243 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.359322 B = 8632.065499 C = 9197.413505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.368 6.368 4 C 0.447 3.553 5 O -0.469 6.469 6 C -0.124 4.124 7 C 0.148 3.852 8 H 0.107 0.893 9 C -0.158 4.158 10 N -0.619 5.619 11 C 0.069 3.931 12 C 0.582 3.418 13 O -0.557 6.557 14 C -0.287 4.287 15 C -0.082 4.082 16 C -0.197 4.197 17 C 0.124 3.876 18 C -0.443 4.443 19 H 0.085 0.915 20 C 0.081 3.919 21 N -0.756 5.756 22 Si 0.906 3.094 23 H -0.267 1.267 24 H -0.272 1.272 25 H -0.256 1.256 26 C -0.247 4.247 27 C -0.019 4.019 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.095 0.905 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.179 8.069 7.413 14.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.288 3.712 5 O -0.352 6.352 6 C -0.163 4.163 7 C 0.043 3.957 8 H 0.125 0.875 9 C -0.216 4.216 10 N -0.353 5.353 11 C -0.074 4.074 12 C 0.378 3.622 13 O -0.436 6.436 14 C -0.292 4.292 15 C -0.101 4.101 16 C -0.216 4.216 17 C 0.121 3.879 18 C -0.469 4.469 19 H 0.103 0.897 20 C -0.142 4.142 21 N -0.378 5.378 22 Si 0.729 3.271 23 H -0.192 1.192 24 H -0.196 1.196 25 H -0.179 1.179 26 C -0.266 4.266 27 C -0.038 4.038 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.098 0.902 44 H 0.113 0.887 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.982 7.583 7.797 14.763 hybrid contribution 0.337 -0.120 -0.826 0.900 sum -9.645 7.464 6.971 14.047 Atomic orbital electron populations 1.21788 0.92887 1.02818 1.03223 1.22957 0.94995 0.80530 1.02722 1.86461 1.25186 1.32194 1.84850 1.23678 0.80455 0.93168 0.73919 1.90865 1.59638 1.42468 1.42257 1.21869 0.97160 0.91545 1.05675 1.20702 0.89766 0.94932 0.90271 0.87518 1.22110 1.02066 0.95541 1.01897 1.47622 1.56251 1.26274 1.05189 1.22400 0.98753 0.98996 0.87205 1.18532 0.76009 0.78217 0.89459 1.90606 1.60444 1.59577 1.33003 1.18854 1.20697 0.95511 0.94106 1.21307 0.97487 0.98443 0.92831 1.21026 1.07381 0.95664 0.97564 1.17736 0.86547 0.91660 0.91956 1.19829 1.31680 1.03401 0.92011 0.89725 1.26129 0.94825 0.93279 0.99974 1.69807 1.24619 1.17701 1.25662 0.86328 0.81960 0.79064 0.79760 1.19209 1.19631 1.17913 1.20590 1.12644 0.98263 0.95112 1.20298 0.94090 0.93302 0.96090 0.91726 0.91559 0.90388 0.91197 0.91442 0.87302 0.87707 0.92184 0.91688 0.91592 0.92893 0.93234 0.88092 0.86916 0.86227 0.90186 0.88729 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.37 -5.00 10.22 -39.25 -0.40 -5.40 16 4 C 0.45 6.85 7.82 36.00 0.28 7.13 16 5 O -0.47 -9.35 13.28 -24.21 -0.32 -9.67 16 6 C -0.12 -1.44 5.23 -27.89 -0.15 -1.58 16 7 C 0.15 2.11 2.25 -67.93 -0.15 1.96 16 8 H 0.11 1.83 6.72 -51.93 -0.35 1.48 16 9 C -0.16 -1.69 9.19 37.16 0.34 -1.35 16 10 N -0.62 -10.94 2.25 -175.12 -0.39 -11.34 16 11 C 0.07 1.05 7.75 59.85 0.46 1.51 16 12 C 0.58 13.20 6.50 -12.42 -0.08 13.12 16 13 O -0.56 -14.16 14.91 -9.77 -0.15 -14.30 16 14 C -0.29 -6.92 5.59 -104.73 -0.59 -7.51 16 15 C -0.08 -1.87 7.48 -39.61 -0.30 -2.17 16 16 C -0.20 -4.92 8.76 -39.27 -0.34 -5.26 16 17 C 0.12 3.25 5.65 -106.80 -0.60 2.64 16 18 C -0.44 -11.22 9.00 -37.75 -0.34 -11.56 16 19 H 0.08 2.06 7.99 -52.48 -0.42 1.64 16 20 C 0.08 1.90 4.98 -17.31 -0.09 1.82 16 21 N -0.76 -17.90 11.03 55.56 0.61 -17.28 16 22 Si 0.91 17.23 29.65 -169.99 -5.04 12.19 16 23 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 24 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 25 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 26 C -0.25 -6.25 9.73 -39.27 -0.38 -6.63 16 27 C -0.02 -0.47 9.52 -39.61 -0.38 -0.84 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.50 16 32 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.04 6.49 -51.93 -0.34 0.70 16 35 H 0.06 0.56 7.67 -51.93 -0.40 0.17 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.72 7.16 -51.93 -0.37 0.35 16 39 H 0.05 0.60 6.35 -51.93 -0.33 0.27 16 40 H 0.10 1.81 4.97 -51.93 -0.26 1.55 16 41 H 0.11 2.20 4.11 -52.49 -0.22 1.98 16 42 H 0.12 2.99 5.86 -52.49 -0.31 2.68 16 43 H 0.29 6.04 8.29 -40.82 -0.34 5.70 16 44 H 0.09 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.10 2.37 7.79 -52.49 -0.41 1.96 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -31.94 365.19 -8.22 -40.16 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -6.33 Total: 8.78 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.69 Total: -8.64 kcal Atomic # 7 Polarization: -28.84 SS G_CDS: 0.22 Total: -28.62 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.87 Total: -29.38 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.04 Total: 12.19 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.94 -8.22 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343445475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.940 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds