Wall clock time and date at job start Tue Mar 31 2020 13:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45207 * 109.47030 * 2 1 4 4 C 1.34227 * 117.00282 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99656 * 359.97438 * 4 3 2 6 6 C 1.50694 * 120.00279 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47428 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.46831 * 305.00292 * 7 6 4 9 9 C 1.52998 * 109.47355 * 184.99956 * 7 6 4 10 10 N 1.46500 * 109.47005 * 64.99997 * 7 6 4 11 11 C 1.46498 * 120.00210 * 59.99991 * 10 7 6 12 12 C 1.34784 * 119.99550 * 240.00143 * 10 7 6 13 13 O 1.21585 * 120.00074 * 4.47110 * 12 10 7 14 14 C 1.47641 * 119.99601 * 184.46944 * 12 10 7 15 15 C 1.40015 * 119.89489 * 22.16492 * 14 12 10 16 16 C 1.36320 * 120.10328 * 179.71524 * 15 14 12 17 17 C 1.40890 * 119.89422 * 0.57388 * 16 15 14 18 18 C 1.41105 * 120.10370 * 179.67392 * 17 16 15 19 19 H 1.08003 * 119.99557 * 165.53806 * 18 17 16 20 20 C 1.40219 * 120.00360 * 345.54289 * 18 17 16 21 21 N 1.30643 * 120.00301 * 330.92427 * 20 18 17 22 22 Si 1.86800 * 120.00275 * 150.91823 * 20 18 17 23 23 H 1.48498 * 109.46988 * 94.99949 * 22 20 18 24 24 H 1.48502 * 109.47606 * 214.99949 * 22 20 18 25 25 H 1.48503 * 109.47317 * 335.00156 * 22 20 18 26 26 C 1.40886 * 119.79044 * 359.70267 * 17 16 15 27 27 C 1.36324 * 119.89392 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.46959 * 300.00106 * 1 2 3 29 29 H 1.08993 * 109.47533 * 59.99964 * 1 2 3 30 30 H 1.08999 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47368 * 240.00243 * 2 1 3 32 32 H 1.09001 * 109.47421 * 119.99716 * 2 1 3 33 33 H 1.09003 * 109.47122 * 59.99671 * 6 4 3 34 34 H 1.09006 * 109.47160 * 300.00118 * 6 4 3 35 35 H 1.08998 * 109.46974 * 300.00229 * 9 7 6 36 36 H 1.08997 * 109.47138 * 59.99602 * 9 7 6 37 37 H 1.08991 * 109.47309 * 179.97438 * 9 7 6 38 38 H 1.09000 * 109.46718 * 84.94319 * 11 10 7 39 39 H 1.08991 * 109.47172 * 324.94610 * 11 10 7 40 40 H 1.09004 * 109.47121 * 204.94041 * 11 10 7 41 41 H 1.07997 * 119.95112 * 0.02562 * 15 14 12 42 42 H 1.07998 * 120.05397 * 180.25349 * 16 15 14 43 43 H 0.96993 * 120.00864 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.05570 * 179.97438 * 26 17 16 45 45 H 1.07997 * 119.94360 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0005 6 6 3.9207 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0023 8 1 5.7812 2.2500 0.8393 9 6 6.0331 4.2659 0.1228 10 7 5.9047 2.2489 -1.2544 11 6 5.5824 2.8810 -2.5362 12 6 6.6209 1.1075 -1.2271 13 8 6.8191 0.5393 -0.1706 14 6 7.1647 0.5470 -2.4801 15 6 7.3551 1.3775 -3.5911 16 6 7.8623 0.8657 -4.7483 17 6 8.1837 -0.5036 -4.8291 18 6 8.7026 -1.0394 -6.0269 19 1 9.1637 -2.0160 -6.0264 20 6 8.6195 -0.3039 -7.2178 21 7 7.6397 0.5416 -7.3965 22 14 9.9099 -0.5328 -8.5490 23 1 9.4252 -1.5238 -9.5430 24 1 10.1591 0.7655 -9.2255 25 1 11.1713 -1.0221 -7.9368 26 6 7.9849 -1.3364 -3.7102 27 6 7.4833 -0.8143 -2.5552 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5850 3.4700 0.8888 34 1 3.5843 3.4694 -0.8912 35 1 5.7004 4.8734 -0.7189 36 1 5.6937 4.7188 1.0543 37 1 7.1215 4.2089 0.1224 38 1 6.3240 3.6480 -2.7596 39 1 4.5942 3.3370 -2.4781 40 1 5.5895 2.1282 -3.3244 41 1 7.1045 2.4262 -3.5297 42 1 8.0127 1.5079 -5.6036 43 1 7.5819 1.0501 -8.2204 44 1 8.2294 -2.3868 -3.7675 45 1 7.3309 -1.4518 -1.6969 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343445475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:51 Heat of formation + Delta-G solvation = -105.401272 kcal Electronic energy + Delta-G solvation = -27226.923810 eV Core-core repulsion = 23402.288974 eV Total energy + Delta-G solvation = -3824.634835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.73467 -40.83464 -39.00485 -37.81486 -37.00159 -35.80125 -33.93281 -32.68106 -31.54560 -31.27698 -29.29604 -27.99220 -27.60716 -24.62267 -23.93422 -22.77348 -22.58947 -21.54590 -20.11665 -19.36438 -18.68787 -18.14710 -17.75863 -17.43630 -17.23060 -16.83691 -16.25393 -15.90429 -15.51893 -15.09341 -14.98707 -14.61141 -14.44556 -14.30768 -14.02185 -13.83400 -13.76800 -13.66776 -13.31918 -13.20654 -13.03920 -12.89950 -12.77016 -12.69658 -12.62694 -12.53515 -12.52628 -12.24096 -11.88540 -11.78205 -11.54588 -11.41366 -11.26323 -10.87401 -10.45321 -9.60609 -9.50267 -9.39858 -8.88123 -6.44200 0.56275 1.16239 1.27612 1.36193 1.42792 1.55013 1.70754 2.12480 2.17307 2.26512 2.75968 3.62330 3.70767 3.72280 3.93756 4.06110 4.12136 4.15818 4.24990 4.28585 4.35192 4.41343 4.46332 4.56610 4.67320 4.69656 4.79917 4.88552 4.89841 4.94173 4.95680 5.00915 5.10401 5.15510 5.20370 5.32805 5.34899 5.51842 5.57485 5.78151 5.90250 5.97531 6.05186 6.21860 6.53458 6.63862 6.76752 6.83056 6.92727 7.57585 8.06573 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.003243 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.359322 B = 8632.065499 C = 9197.413505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 O -0.362 6.362 4 C 0.442 3.558 5 O -0.526 6.526 6 C -0.115 4.115 7 C 0.141 3.859 8 H 0.070 0.930 9 C -0.148 4.148 10 N -0.611 5.611 11 C 0.062 3.938 12 C 0.577 3.423 13 O -0.597 6.597 14 C -0.304 4.304 15 C -0.067 4.067 16 C -0.217 4.217 17 C 0.097 3.903 18 C -0.473 4.473 19 H 0.082 0.918 20 C 0.047 3.953 21 N -0.776 5.776 22 Si 0.983 3.017 23 H -0.258 1.258 24 H -0.256 1.256 25 H -0.261 1.261 26 C -0.266 4.266 27 C -0.034 4.034 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.153 0.847 34 H 0.135 0.865 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.047 0.953 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.150 0.850 42 H 0.119 0.881 43 H 0.301 0.699 44 H 0.096 0.904 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.496 11.362 6.467 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.279 6.279 4 C 0.286 3.714 5 O -0.413 6.413 6 C -0.153 4.153 7 C 0.037 3.963 8 H 0.088 0.912 9 C -0.206 4.206 10 N -0.344 5.344 11 C -0.079 4.079 12 C 0.371 3.629 13 O -0.480 6.480 14 C -0.308 4.308 15 C -0.085 4.085 16 C -0.236 4.236 17 C 0.094 3.906 18 C -0.499 4.499 19 H 0.100 0.900 20 C -0.176 4.176 21 N -0.398 5.398 22 Si 0.802 3.198 23 H -0.182 1.182 24 H -0.180 1.180 25 H -0.185 1.185 26 C -0.285 4.285 27 C -0.053 4.053 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.170 0.830 34 H 0.152 0.848 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.167 0.833 42 H 0.137 0.863 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.363 10.937 6.853 17.196 hybrid contribution 0.618 -1.135 -0.492 1.383 sum -10.745 9.803 6.361 15.875 Atomic orbital electron populations 1.21785 0.89684 1.04241 1.04012 1.23151 0.97462 0.79897 1.01451 1.86476 1.24394 1.32814 1.84249 1.24568 0.80541 0.94180 0.72143 1.90873 1.60852 1.44580 1.45044 1.21996 0.94577 0.89598 1.09084 1.20968 0.91925 0.96124 0.87235 0.91180 1.22058 1.00752 0.93079 1.04673 1.47606 1.54437 1.24722 1.07599 1.22502 1.01930 0.98493 0.85000 1.18377 0.76682 0.79657 0.88158 1.90573 1.62228 1.61227 1.33966 1.19189 1.20734 0.95326 0.95560 1.21622 0.95478 1.00009 0.91412 1.21097 1.08812 0.95264 0.98403 1.18077 0.87355 0.92608 0.92539 1.20091 1.32621 1.04135 0.93016 0.90011 1.26948 0.96505 0.92550 1.01576 1.69783 1.25453 1.17556 1.26975 0.85183 0.78367 0.79698 0.76549 1.18235 1.17988 1.18493 1.20687 1.13775 0.98562 0.95496 1.20391 0.94832 0.94337 0.95767 0.90506 0.91080 0.88703 0.93217 0.92178 0.82958 0.84758 0.89771 0.88493 0.93407 0.90412 0.89075 0.91085 0.83298 0.86294 0.88703 0.88572 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.29 71.98 0.74 -1.42 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.36 -9.36 10.22 -51.38 -0.53 -9.89 16 4 C 0.44 13.18 7.82 71.23 0.56 13.74 16 5 O -0.53 -21.77 13.28 27.17 0.36 -21.41 16 6 C -0.11 -2.27 5.23 29.85 0.16 -2.11 16 7 C 0.14 3.76 2.25 44.99 0.10 3.86 16 8 H 0.07 2.43 6.72 -2.39 -0.02 2.41 16 9 C -0.15 -2.60 9.19 71.98 0.66 -1.94 16 10 N -0.61 -21.02 2.25 -826.23 -1.86 -22.88 16 11 C 0.06 1.71 7.75 127.77 0.99 2.70 16 12 C 0.58 26.98 6.50 86.73 0.56 27.54 16 13 O -0.60 -32.03 14.91 10.41 0.16 -31.88 16 14 C -0.30 -15.21 5.59 -19.93 -0.11 -15.32 16 15 C -0.07 -3.09 7.48 22.25 0.17 -2.92 16 16 C -0.22 -11.03 8.76 22.47 0.20 -10.83 16 17 C 0.10 5.30 5.65 -21.28 -0.12 5.18 16 18 C -0.47 -24.64 9.00 23.46 0.21 -24.43 16 19 H 0.08 4.15 7.99 -2.91 -0.02 4.12 16 20 C 0.05 2.16 4.98 85.35 0.42 2.58 16 21 N -0.78 -36.36 11.03 21.87 0.24 -36.12 16 22 Si 0.98 34.63 29.65 68.60 2.03 36.66 16 23 H -0.26 -8.68 7.11 99.48 0.71 -7.98 16 24 H -0.26 -8.34 7.11 99.48 0.71 -7.64 16 25 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 26 C -0.27 -14.32 9.73 22.47 0.22 -14.11 16 27 C -0.03 -1.82 9.52 22.25 0.21 -1.61 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.38 8.13 -2.39 -0.02 1.37 16 32 H 0.06 1.52 8.13 -2.39 -0.02 1.50 16 33 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.13 1.93 6.49 -2.38 -0.02 1.91 16 35 H 0.08 1.11 7.67 -2.39 -0.02 1.09 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.80 7.16 -2.39 -0.02 1.78 16 39 H 0.09 1.77 6.35 -2.39 -0.02 1.76 16 40 H 0.07 2.44 4.97 -2.39 -0.01 2.43 16 41 H 0.15 5.59 4.11 -2.91 -0.01 5.58 16 42 H 0.12 5.98 5.86 -2.91 -0.02 5.97 16 43 H 0.30 12.27 8.29 -92.71 -0.77 11.50 16 44 H 0.10 4.93 8.06 -2.91 -0.02 4.91 16 45 H 0.09 4.62 7.79 -2.91 -0.02 4.60 16 Total: -1.00 -76.01 365.19 6.82 -69.19 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 1.00 Total: 33.66 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 5.41 Total: -17.33 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -1.62 Total: -59.00 kcal Atomic # 8 Polarization: -63.17 SS G_CDS: -0.01 Total: -63.18 kcal Atomic # 14 Polarization: 34.63 SS G_CDS: 2.03 Total: 36.66 kcal Total: -76.01 6.82 -69.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343445475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.214 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds