Wall clock time and date at job start Tue Mar 31 2020 12:35:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46495 * 109.47363 * 2 1 4 4 C 1.36911 * 119.99665 * 264.45471 * 3 2 1 5 5 H 1.08001 * 119.99447 * 185.17633 * 4 3 2 6 6 C 1.39021 * 120.00229 * 5.17296 * 4 3 2 7 7 N 1.31384 * 119.99863 * 34.62191 * 6 4 3 8 8 Si 1.86792 * 120.00091 * 214.62710 * 6 4 3 9 9 H 1.48504 * 109.47396 * 94.99774 * 8 6 4 10 10 H 1.48502 * 109.47398 * 214.99893 * 8 6 4 11 11 H 1.48505 * 109.47122 * 334.99963 * 8 6 4 12 12 C 1.34770 * 120.00210 * 84.45546 * 3 2 1 13 13 O 1.21631 * 120.00025 * 185.72847 * 12 3 2 14 14 C 1.47432 * 120.00062 * 5.72361 * 12 3 2 15 15 C 1.39760 * 120.19455 * 54.97687 * 14 12 3 16 16 C 1.37776 * 119.90087 * 179.97438 * 15 14 12 17 17 C 1.38555 * 120.30472 * 359.97438 * 16 15 14 18 18 C 1.38074 * 120.40399 * 0.02562 * 17 16 15 19 19 C 1.38687 * 120.09044 * 359.97438 * 18 17 16 20 20 O 1.35652 * 120.15389 * 179.97438 * 19 18 17 21 21 C 1.42899 * 117.00218 * 0.02562 * 20 19 18 22 22 C 1.53000 * 109.47112 * 180.02562 * 21 20 19 23 23 H 1.09003 * 109.82168 * 305.56593 * 22 21 20 24 24 C 1.54381 * 109.83099 * 184.59173 * 22 21 20 25 25 C 1.55304 * 102.25329 * 219.12787 * 24 22 21 26 26 C 1.54951 * 100.94168 * 34.13362 * 25 24 22 27 27 O 1.43238 * 109.83242 * 66.45759 * 22 21 20 28 28 H 1.09002 * 109.47478 * 59.99830 * 1 2 3 29 29 H 1.08999 * 109.47841 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47380 * 300.00379 * 1 2 3 31 31 H 1.09003 * 109.46910 * 239.99447 * 2 1 3 32 32 H 1.08996 * 109.46824 * 120.00139 * 2 1 3 33 33 H 0.97000 * 120.00092 * 180.02562 * 7 6 4 34 34 H 1.08000 * 120.05459 * 359.95570 * 15 14 12 35 35 H 1.07997 * 119.84728 * 179.72249 * 16 15 14 36 36 H 1.08005 * 119.80053 * 180.02562 * 17 16 15 37 37 H 1.08002 * 119.96169 * 179.97438 * 18 17 16 38 38 H 1.08990 * 109.47443 * 299.99914 * 21 20 19 39 39 H 1.09001 * 109.46840 * 60.00200 * 21 20 19 40 40 H 1.09008 * 110.84939 * 337.31636 * 24 22 21 41 41 H 1.09002 * 110.85104 * 100.93684 * 24 22 21 42 42 H 1.08991 * 111.12880 * 276.21150 * 25 24 22 43 43 H 1.08999 * 111.12468 * 152.04855 * 25 24 22 44 44 H 1.08994 * 110.30826 * 204.63907 * 26 25 24 45 45 H 1.08999 * 110.39214 * 82.51228 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3545 1.9883 -1.1802 5 1 2.7928 2.9753 -1.1739 6 6 2.1318 1.3342 -2.3865 7 7 1.0845 0.5535 -2.5269 8 14 3.3217 1.5653 -3.8078 9 1 4.3190 0.4650 -3.8024 10 1 2.5716 1.5471 -5.0893 11 1 4.0205 2.8674 -3.6616 12 6 2.1367 2.0541 1.1617 13 8 2.4417 3.2315 1.1541 14 6 1.8962 1.3631 2.4417 15 6 2.6027 0.1987 2.7554 16 6 2.3736 -0.4418 3.9535 17 6 1.4459 0.0633 4.8501 18 6 0.7409 1.2127 4.5530 19 6 0.9583 1.8709 3.3518 20 8 0.2661 2.9999 3.0583 21 6 -0.6729 3.4572 4.0336 22 6 -1.3517 4.7323 3.5295 23 1 -0.5970 5.4732 3.2655 24 6 -2.2828 5.2976 4.6235 25 6 -3.5049 5.7835 3.7975 26 6 -3.5381 4.7219 2.6693 27 8 -2.1600 4.4329 2.3855 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8899 33 1 0.9292 0.0969 -3.3685 34 1 3.3269 -0.1986 2.0597 35 1 2.9167 -1.3440 4.1931 36 1 1.2730 -0.4452 5.7872 37 1 0.0191 1.5999 5.2570 38 1 -1.4260 2.6874 4.2018 39 1 -0.1528 3.6671 4.9683 40 1 -2.5750 4.5168 5.3258 41 1 -1.8097 6.1309 5.1431 42 1 -3.3342 6.7812 3.3932 43 1 -4.4179 5.7535 4.3921 44 1 -4.0300 5.1257 1.7844 45 1 -4.0511 3.8223 3.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344191435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:39 Heat of formation + Delta-G solvation = -70.963714 kcal Electronic energy + Delta-G solvation = -27844.109627 eV Core-core repulsion = 24020.968116 eV Total energy + Delta-G solvation = -3823.141511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.14861 -39.35730 -37.99258 -36.71764 -34.84811 -32.32243 -31.95131 -31.14938 -30.45281 -29.28752 -29.22413 -25.89664 -25.08341 -23.08535 -22.25810 -21.93973 -21.62531 -20.87011 -19.34875 -17.66978 -17.14206 -16.68926 -16.23183 -16.14155 -15.61655 -15.26935 -14.90652 -14.42797 -14.25275 -14.12609 -13.85770 -13.68490 -13.37968 -13.08322 -12.65450 -12.54086 -12.21279 -12.13000 -11.88937 -11.77223 -11.58985 -11.41686 -11.34123 -11.10194 -11.05020 -11.00538 -10.88149 -10.68441 -10.57891 -10.27782 -10.09326 -9.71026 -9.47961 -8.77926 -8.54162 -8.20040 -7.75329 -7.67326 -6.36846 -3.60371 1.54505 1.80109 3.20479 3.32350 3.37772 3.38805 3.83562 3.86324 4.15217 4.27924 4.31232 4.60339 4.72561 4.93907 4.99265 5.03783 5.08199 5.12877 5.20369 5.23816 5.30666 5.41394 5.45985 5.48703 5.56054 5.67980 5.70951 5.79264 5.82872 5.96296 6.04858 6.25466 6.30042 6.55753 6.64237 6.71072 6.75186 6.82379 6.89585 7.04477 7.13682 7.28764 7.53620 7.80659 7.85194 8.21352 8.61488 9.29275 9.54372 10.15347 10.66253 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.011631 B = 0.004602 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.772864 B = 6082.786845 C = 7587.167258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.115 3.885 3 N -0.429 5.429 4 C -0.311 4.311 5 H 0.107 0.893 6 C 0.038 3.962 7 N -0.846 5.846 8 Si 0.907 3.093 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.483 3.517 13 O -0.580 6.580 14 C -0.114 4.114 15 C -0.062 4.062 16 C -0.165 4.165 17 C -0.084 4.084 18 C -0.220 4.220 19 C 0.161 3.839 20 O -0.279 6.279 21 C 0.049 3.951 22 C 0.083 3.917 23 H 0.094 0.906 24 C -0.147 4.147 25 C -0.155 4.155 26 C 0.045 3.955 27 O -0.359 6.359 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.025 0.975 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.062 0.938 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.649 0.523 15.224 17.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 N -0.147 5.147 4 C -0.438 4.438 5 H 0.125 0.875 6 C -0.167 4.167 7 N -0.484 5.484 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.192 1.192 12 C 0.272 3.728 13 O -0.465 6.465 14 C -0.118 4.118 15 C -0.081 4.081 16 C -0.184 4.184 17 C -0.102 4.102 18 C -0.239 4.239 19 C 0.114 3.886 20 O -0.191 6.191 21 C -0.027 4.027 22 C 0.025 3.975 23 H 0.112 0.888 24 C -0.184 4.184 25 C -0.192 4.192 26 C -0.032 4.032 27 O -0.278 6.278 28 H 0.112 0.888 29 H 0.054 0.946 30 H 0.044 0.956 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.101 0.899 44 H 0.104 0.896 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.518 1.035 14.653 16.502 hybrid contribution 0.134 -0.193 -0.253 0.345 sum -7.385 0.841 14.400 16.205 Atomic orbital electron populations 1.22081 0.96589 0.99544 1.02452 1.21538 0.94787 0.83880 1.00641 1.43758 1.54562 1.11202 1.05138 1.19706 1.37941 1.03989 0.82176 0.87530 1.25147 0.95949 0.97259 0.98394 1.70227 1.21646 1.30208 1.26282 0.86215 0.81255 0.79130 0.80071 1.20439 1.21240 1.19238 1.17444 0.85940 0.86533 0.82905 1.90612 1.53838 1.15380 1.86706 1.19637 0.98408 0.96984 0.96788 1.21150 0.97795 0.92818 0.96338 1.20873 1.01097 1.01400 0.94988 1.20841 0.95471 0.95064 0.98838 1.21060 1.05575 0.99804 0.97418 1.18981 0.91001 0.86120 0.92509 1.86315 1.50913 1.38569 1.43295 1.23222 0.91400 0.96615 0.91476 1.22769 0.93495 0.95009 0.86239 0.88842 1.23102 0.95907 1.01513 0.97910 1.23271 0.98437 1.00163 0.97367 1.23428 0.84587 0.96911 0.98283 1.88681 1.16587 1.87277 1.35243 0.88842 0.94637 0.95569 0.89212 0.93747 0.92257 0.85093 0.86074 0.86296 0.85934 0.91987 0.91379 0.90253 0.89452 0.90104 0.89859 0.89594 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.44 9.78 37.16 0.36 -3.08 16 2 C 0.12 2.72 5.09 -4.05 -0.02 2.70 16 3 N -0.43 -11.63 2.63 -116.03 -0.31 -11.94 16 4 C -0.31 -8.99 9.36 -14.99 -0.14 -9.13 16 5 H 0.11 3.29 7.39 -52.49 -0.39 2.90 16 6 C 0.04 1.00 4.66 -17.45 -0.08 0.92 16 7 N -0.85 -22.37 9.15 55.50 0.51 -21.86 16 8 Si 0.91 20.74 29.67 -169.99 -5.04 15.70 16 9 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.48 13.09 6.69 -12.52 -0.08 13.00 16 13 O -0.58 -17.84 16.40 3.02 0.05 -17.79 16 14 C -0.11 -2.53 4.84 -104.85 -0.51 -3.03 16 15 C -0.06 -1.14 7.61 -39.18 -0.30 -1.44 16 16 C -0.17 -2.45 10.02 -39.63 -0.40 -2.85 16 17 C -0.08 -1.17 10.03 -39.52 -0.40 -1.56 16 18 C -0.22 -3.43 9.03 -39.48 -0.36 -3.79 16 19 C 0.16 3.25 6.69 -38.68 -0.26 2.99 16 20 O -0.28 -5.88 9.35 -28.88 -0.27 -6.15 16 21 C 0.05 0.72 4.27 37.16 0.16 0.88 16 22 C 0.08 1.16 3.81 -26.01 -0.10 1.06 16 23 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 24 C -0.15 -1.33 6.54 -24.79 -0.16 -1.49 16 25 C -0.15 -1.33 7.16 -24.48 -0.18 -1.51 16 26 C 0.04 0.52 7.78 38.19 0.30 0.82 16 27 O -0.36 -6.07 11.00 -37.79 -0.42 -6.49 16 28 H 0.09 2.44 6.32 -51.93 -0.33 2.11 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.03 0.60 8.01 -51.93 -0.42 0.19 16 31 H 0.09 2.22 5.99 -51.93 -0.31 1.90 16 32 H 0.04 0.93 4.54 -51.93 -0.24 0.69 16 33 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 34 H 0.13 2.30 7.37 -52.49 -0.39 1.91 16 35 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 37 H 0.12 1.54 6.30 -52.49 -0.33 1.21 16 38 H 0.06 0.84 7.66 -51.93 -0.40 0.44 16 39 H 0.07 0.82 7.66 -51.93 -0.40 0.42 16 40 H 0.08 0.61 7.85 -51.92 -0.41 0.20 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 363.35 15.07 5.48 5.48 Total: -1.00 -34.93 363.35 -8.70 -43.62 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.54 Total: 4.92 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.16 Total: -5.49 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.20 Total: -33.80 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.64 Total: -30.43 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.04 Total: 15.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.93 -8.70 -43.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344191435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.341 kcal (2) G-P(sol) polarization free energy of solvation -34.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds