Wall clock time and date at job start Tue Mar 31 2020 12:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47178 * 2 1 4 4 C 1.36936 * 120.00120 * 275.24191 * 3 2 1 5 5 H 1.08002 * 120.00169 * 146.57357 * 4 3 2 6 6 C 1.38811 * 119.99711 * 326.58166 * 4 3 2 7 7 N 1.31614 * 120.00460 * 336.12357 * 6 4 3 8 8 Si 1.86808 * 119.99894 * 156.12914 * 6 4 3 9 9 H 1.48497 * 109.47032 * 59.99596 * 8 6 4 10 10 H 1.48493 * 109.47282 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46764 * 299.99787 * 8 6 4 12 12 S 1.65604 * 120.00148 * 95.24582 * 3 2 1 13 13 O 1.42094 * 104.27787 * 153.92899 * 12 3 2 14 14 O 1.42106 * 104.27505 * 26.06909 * 12 3 2 15 15 C 1.81398 * 104.44791 * 269.99989 * 12 3 2 16 16 C 1.53001 * 109.46996 * 179.97438 * 15 12 3 17 17 H 1.08997 * 109.47491 * 305.00064 * 16 15 12 18 18 C 1.53001 * 109.46949 * 65.00188 * 16 15 12 19 19 C 1.53000 * 109.47016 * 184.99754 * 16 15 12 20 20 O 1.42900 * 109.47047 * 175.00342 * 19 16 15 21 21 C 1.42902 * 114.00069 * 180.02562 * 20 19 16 22 22 C 1.55244 * 110.57918 * 264.87632 * 21 20 19 23 23 C 1.54892 * 102.58433 * 203.33740 * 22 21 20 24 24 C 1.54261 * 104.31549 * 37.92919 * 23 22 21 25 25 C 1.53880 * 106.60054 * 336.32353 * 24 23 22 26 26 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47023 * 300.00246 * 1 2 3 28 28 H 1.09001 * 109.47081 * 60.00275 * 1 2 3 29 29 H 1.09003 * 109.47442 * 239.99891 * 2 1 3 30 30 H 1.09006 * 109.47039 * 120.00202 * 2 1 3 31 31 H 0.97001 * 120.00469 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47064 * 59.99937 * 15 12 3 33 33 H 1.09002 * 109.46887 * 299.99993 * 15 12 3 34 34 H 1.09012 * 109.47181 * 59.99635 * 18 16 15 35 35 H 1.08996 * 109.47041 * 179.97438 * 18 16 15 36 36 H 1.09002 * 109.47234 * 300.00082 * 18 16 15 37 37 H 1.08998 * 109.46975 * 55.00319 * 19 16 15 38 38 H 1.09001 * 109.47263 * 295.00317 * 19 16 15 39 39 H 1.09005 * 110.43124 * 27.45514 * 21 20 19 40 40 H 1.08994 * 110.90014 * 85.04717 * 22 21 20 41 41 H 1.08995 * 110.76597 * 321.56566 * 22 21 20 42 42 H 1.09001 * 110.48859 * 279.18622 * 23 22 21 43 43 H 1.08996 * 110.48505 * 156.67558 * 23 22 21 44 44 H 1.09001 * 110.03468 * 95.60579 * 24 23 22 45 45 H 1.08997 * 110.04013 * 216.99010 * 24 23 22 46 46 H 1.09004 * 110.02974 * 119.28093 * 25 24 23 47 47 H 1.08997 * 110.03776 * 240.66738 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.9694 3.1282 -1.2109 6 6 2.4971 1.3846 -2.3395 7 7 3.1521 0.2456 -2.2619 8 14 2.0420 2.0883 -4.0091 9 1 2.6692 3.4246 -4.1706 10 1 2.5295 1.1807 -5.0784 11 1 0.5660 2.2194 -4.1052 12 16 2.4180 2.1182 1.4281 13 8 3.3745 3.1020 1.0591 14 8 2.7669 1.0443 2.2910 15 6 0.8780 2.9027 1.9790 16 6 1.1199 3.6249 3.3060 17 1 1.5342 2.9242 4.0309 18 6 2.1049 4.7753 3.0883 19 6 -0.2046 4.1805 3.8331 20 8 -0.0001 4.7529 5.1264 21 6 -1.1818 5.3031 5.7120 22 6 -1.2728 6.8267 5.4284 23 6 -2.1858 7.3293 6.5742 24 6 -1.7556 6.4952 7.7985 25 6 -1.1172 5.2069 7.2503 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.3982 -0.2285 -3.0716 32 1 0.1105 2.1408 2.1151 33 1 0.5477 3.6212 1.2288 34 1 1.6906 5.4761 2.3634 35 1 2.2768 5.2901 4.0335 36 1 3.0485 4.3796 2.7127 37 1 -0.9344 3.3740 3.9040 38 1 -0.5745 4.9462 3.1513 39 1 -2.0672 4.7915 5.3345 40 1 -1.7320 7.0148 4.4579 41 1 -0.2882 7.2903 5.4874 42 1 -3.2334 7.1450 6.3361 43 1 -2.0183 8.3906 6.7577 44 1 -1.0278 7.0496 8.3910 45 1 -2.6253 6.2514 8.4086 46 1 -0.0796 5.1362 7.5768 47 1 -1.6768 4.3371 7.5945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346428991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:58 Heat of formation + Delta-G solvation = -133.149921 kcal Electronic energy + Delta-G solvation = -26044.459875 eV Core-core repulsion = 22354.065720 eV Total energy + Delta-G solvation = -3690.394156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.19228 -36.91576 -36.04746 -35.81209 -34.88407 -34.47834 -31.63166 -29.21060 -29.01372 -28.18656 -27.18658 -25.83707 -24.55419 -21.67998 -20.97682 -20.73808 -20.16111 -18.38543 -17.47828 -17.00470 -16.43264 -15.98323 -15.83361 -15.34202 -14.93036 -14.55960 -14.48777 -13.98680 -13.89259 -13.56564 -13.44793 -12.90725 -12.60668 -12.50912 -12.40492 -12.25270 -11.93085 -11.80959 -11.49666 -11.39596 -11.34979 -11.24761 -11.06430 -10.97771 -10.90661 -10.88286 -10.82915 -10.78189 -10.69770 -10.63479 -10.40519 -10.13231 -9.87902 -9.65085 -9.55074 -8.98696 -7.66537 -6.19839 -3.88820 1.30232 3.24173 3.29405 3.30702 3.48191 3.97110 4.30571 4.34273 4.39900 4.62137 4.74533 4.78806 4.87318 4.97618 5.03146 5.13215 5.16723 5.18734 5.22246 5.32415 5.37631 5.47175 5.57968 5.61009 5.64185 5.67482 5.75509 5.86820 5.88175 5.91794 5.94130 6.02864 6.07006 6.16175 6.23501 6.30544 6.37045 6.52002 6.60104 6.92562 7.18601 7.31120 7.46190 7.84499 8.46909 9.07408 9.43901 10.82403 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.002969 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.311872 B = 9429.109865 C = 9683.543949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.106 3.894 3 N -0.846 5.846 4 C -0.291 4.291 5 H 0.090 0.910 6 C 0.038 3.962 7 N -0.860 5.860 8 Si 0.912 3.088 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.275 1.275 12 S 2.567 3.433 13 O -0.960 6.960 14 O -0.992 6.992 15 C -0.632 4.632 16 C -0.075 4.075 17 H 0.086 0.914 18 C -0.173 4.173 19 C 0.076 3.924 20 O -0.376 6.376 21 C 0.082 3.918 22 C -0.147 4.147 23 C -0.124 4.124 24 C -0.122 4.122 25 C -0.124 4.124 26 H 0.048 0.952 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.116 0.884 30 H 0.060 0.940 31 H 0.266 0.734 32 H 0.123 0.877 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.077 0.923 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.028 8.730 13.152 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.021 4.021 3 N -0.678 5.678 4 C -0.425 4.425 5 H 0.108 0.892 6 C -0.168 4.168 7 N -0.499 5.499 8 Si 0.739 3.261 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.201 1.201 12 S 2.665 3.335 13 O -0.950 6.950 14 O -0.982 6.982 15 C -0.757 4.757 16 C -0.094 4.094 17 H 0.105 0.895 18 C -0.230 4.230 19 C -0.002 4.002 20 O -0.296 6.296 21 C 0.024 3.976 22 C -0.185 4.185 23 C -0.162 4.162 24 C -0.160 4.160 25 C -0.162 4.162 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.133 0.867 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.147 0.853 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.920 8.624 13.661 19.500 hybrid contribution -1.300 0.414 -1.118 1.764 sum -12.220 9.038 12.543 19.706 Atomic orbital electron populations 1.22236 0.99028 1.00131 1.00925 1.21363 0.91262 0.84566 1.04926 1.52604 1.77141 1.20456 1.17577 1.18979 1.45357 0.93820 0.84352 0.89231 1.25267 0.95158 0.96893 0.99522 1.69972 1.33958 1.16891 1.29089 0.86245 0.78948 0.79017 0.81920 1.19796 1.21044 1.20085 1.06901 0.76319 0.75018 0.75273 1.93456 1.56256 1.63509 1.81746 1.93440 1.81906 1.52996 1.69833 1.30865 1.26640 1.12579 1.05654 1.20747 0.96299 0.98049 0.94332 0.89529 1.22208 0.99879 0.98225 1.02707 1.22564 0.96891 0.96533 0.84169 1.87912 1.32438 1.76972 1.32233 1.23061 0.87926 0.93059 0.93549 1.23046 1.00769 0.96123 0.98518 1.22273 0.99299 0.99647 0.94955 1.22080 1.00374 0.95855 0.97680 1.22197 1.02336 0.97923 0.93726 0.93319 0.94779 0.92165 0.86681 0.92203 0.92348 0.85885 0.85276 0.91899 0.91196 0.90371 0.93155 0.92950 0.91686 0.91480 0.90337 0.91620 0.91429 0.91543 0.91706 0.90379 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.21 37.16 0.38 -2.62 16 2 C 0.11 2.40 5.98 -4.04 -0.02 2.38 16 3 N -0.85 -20.46 2.78 -59.91 -0.17 -20.63 16 4 C -0.29 -7.49 8.78 -15.06 -0.13 -7.62 16 5 H 0.09 2.22 7.94 -52.49 -0.42 1.80 16 6 C 0.04 0.99 4.98 -17.43 -0.09 0.91 16 7 N -0.86 -23.35 11.28 55.49 0.63 -22.73 16 8 Si 0.91 19.95 29.62 -169.99 -5.03 14.92 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 12 S 2.57 57.30 5.04 -107.50 -0.54 56.75 16 13 O -0.96 -24.10 14.97 -57.54 -0.86 -24.96 16 14 O -0.99 -24.22 16.53 -57.54 -0.95 -25.17 16 15 C -0.63 -10.43 5.62 37.16 0.21 -10.22 16 16 C -0.07 -1.15 2.62 -90.62 -0.24 -1.38 16 17 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 18 C -0.17 -2.71 8.78 37.16 0.33 -2.38 16 19 C 0.08 0.98 5.16 37.16 0.19 1.17 16 20 O -0.38 -4.89 9.60 -35.23 -0.34 -5.22 16 21 C 0.08 0.84 3.35 -24.88 -0.08 0.76 16 22 C -0.15 -1.33 6.65 -24.54 -0.16 -1.49 16 23 C -0.12 -0.91 6.82 -25.07 -0.17 -1.08 16 24 C -0.12 -0.89 6.80 -25.61 -0.17 -1.06 16 25 C -0.12 -1.11 6.56 -25.61 -0.17 -1.27 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.03 0.55 6.98 -51.93 -0.36 0.18 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 29 H 0.12 2.87 5.31 -51.93 -0.28 2.59 16 30 H 0.06 1.34 6.81 -51.93 -0.35 0.99 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 32 H 0.12 1.80 6.98 -51.92 -0.36 1.43 16 33 H 0.13 1.97 8.14 -51.92 -0.42 1.55 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 35 H 0.07 0.99 7.82 -51.93 -0.41 0.58 16 36 H 0.08 1.39 5.61 -51.93 -0.29 1.10 16 37 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.61 7.82 -51.93 -0.41 0.21 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -31.21 379.03 -10.04 -41.25 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -8.34 Total: 4.01 kcal Atomic # 6 Polarization: -23.79 SS G_CDS: -0.14 Total: -23.93 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.46 Total: -43.36 kcal Atomic # 8 Polarization: -53.21 SS G_CDS: -2.15 Total: -55.36 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: 57.30 SS G_CDS: -0.54 Total: 56.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.21 -10.04 -41.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346428991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.904 kcal (2) G-P(sol) polarization free energy of solvation -31.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds