Wall clock time and date at job start Tue Mar 31 2020 12:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47178 * 2 1 4 4 C 1.36936 * 120.00120 * 275.24191 * 3 2 1 5 5 H 1.08002 * 120.00169 * 146.57357 * 4 3 2 6 6 C 1.38811 * 119.99711 * 326.58166 * 4 3 2 7 7 N 1.31614 * 120.00460 * 336.12357 * 6 4 3 8 8 Si 1.86808 * 119.99894 * 156.12914 * 6 4 3 9 9 H 1.48497 * 109.47032 * 59.99596 * 8 6 4 10 10 H 1.48493 * 109.47282 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.46764 * 299.99787 * 8 6 4 12 12 S 1.65604 * 120.00148 * 95.24582 * 3 2 1 13 13 O 1.42094 * 104.27787 * 153.92899 * 12 3 2 14 14 O 1.42106 * 104.27505 * 26.06909 * 12 3 2 15 15 C 1.81398 * 104.44791 * 269.99989 * 12 3 2 16 16 C 1.53001 * 109.46996 * 179.97438 * 15 12 3 17 17 H 1.08997 * 109.47491 * 305.00064 * 16 15 12 18 18 C 1.53001 * 109.46949 * 65.00188 * 16 15 12 19 19 C 1.53000 * 109.47016 * 184.99754 * 16 15 12 20 20 O 1.42900 * 109.47047 * 175.00342 * 19 16 15 21 21 C 1.42902 * 114.00069 * 180.02562 * 20 19 16 22 22 C 1.55244 * 110.57918 * 264.87632 * 21 20 19 23 23 C 1.54892 * 102.58433 * 203.33740 * 22 21 20 24 24 C 1.54261 * 104.31549 * 37.92919 * 23 22 21 25 25 C 1.53880 * 106.60054 * 336.32353 * 24 23 22 26 26 H 1.08999 * 109.46966 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47023 * 300.00246 * 1 2 3 28 28 H 1.09001 * 109.47081 * 60.00275 * 1 2 3 29 29 H 1.09003 * 109.47442 * 239.99891 * 2 1 3 30 30 H 1.09006 * 109.47039 * 120.00202 * 2 1 3 31 31 H 0.97001 * 120.00469 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47064 * 59.99937 * 15 12 3 33 33 H 1.09002 * 109.46887 * 299.99993 * 15 12 3 34 34 H 1.09012 * 109.47181 * 59.99635 * 18 16 15 35 35 H 1.08996 * 109.47041 * 179.97438 * 18 16 15 36 36 H 1.09002 * 109.47234 * 300.00082 * 18 16 15 37 37 H 1.08998 * 109.46975 * 55.00319 * 19 16 15 38 38 H 1.09001 * 109.47263 * 295.00317 * 19 16 15 39 39 H 1.09005 * 110.43124 * 27.45514 * 21 20 19 40 40 H 1.08994 * 110.90014 * 85.04717 * 22 21 20 41 41 H 1.08995 * 110.76597 * 321.56566 * 22 21 20 42 42 H 1.09001 * 110.48859 * 279.18622 * 23 22 21 43 43 H 1.08996 * 110.48505 * 156.67558 * 23 22 21 44 44 H 1.09001 * 110.03468 * 95.60579 * 24 23 22 45 45 H 1.08997 * 110.04013 * 216.99010 * 24 23 22 46 46 H 1.09004 * 110.02974 * 119.28093 * 25 24 23 47 47 H 1.08997 * 110.03776 * 240.66738 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1444 2.0629 -1.1809 5 1 1.9694 3.1282 -1.2109 6 6 2.4971 1.3846 -2.3395 7 7 3.1521 0.2456 -2.2619 8 14 2.0420 2.0883 -4.0091 9 1 2.6692 3.4246 -4.1706 10 1 2.5295 1.1807 -5.0784 11 1 0.5660 2.2194 -4.1052 12 16 2.4180 2.1182 1.4281 13 8 3.3745 3.1020 1.0591 14 8 2.7669 1.0443 2.2910 15 6 0.8780 2.9027 1.9790 16 6 1.1199 3.6249 3.3060 17 1 1.5342 2.9242 4.0309 18 6 2.1049 4.7753 3.0883 19 6 -0.2046 4.1805 3.8331 20 8 -0.0001 4.7529 5.1264 21 6 -1.1818 5.3031 5.7120 22 6 -1.2728 6.8267 5.4284 23 6 -2.1858 7.3293 6.5742 24 6 -1.7556 6.4952 7.7985 25 6 -1.1172 5.2069 7.2503 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.3982 -0.2285 -3.0716 32 1 0.1105 2.1408 2.1151 33 1 0.5477 3.6212 1.2288 34 1 1.6906 5.4761 2.3634 35 1 2.2768 5.2901 4.0335 36 1 3.0485 4.3796 2.7127 37 1 -0.9344 3.3740 3.9040 38 1 -0.5745 4.9462 3.1513 39 1 -2.0672 4.7915 5.3345 40 1 -1.7320 7.0148 4.4579 41 1 -0.2882 7.2903 5.4874 42 1 -3.2334 7.1450 6.3361 43 1 -2.0183 8.3906 6.7577 44 1 -1.0278 7.0496 8.3910 45 1 -2.6253 6.2514 8.4086 46 1 -0.0796 5.1362 7.5768 47 1 -1.6768 4.3371 7.5945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346428991.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:36:57 Heat of formation + Delta-G solvation = -152.592736 kcal Electronic energy + Delta-G solvation = -26045.302979 eV Core-core repulsion = 22354.065720 eV Total energy + Delta-G solvation = -3691.237259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.01012 -37.94850 -37.77904 -37.63846 -36.63872 -35.63785 -33.52196 -30.90477 -29.65381 -29.00767 -28.46632 -26.84177 -26.43872 -23.35236 -21.76986 -21.62392 -21.05300 -20.18847 -19.04235 -18.31455 -18.05312 -17.25535 -16.78566 -16.70403 -16.46326 -16.16056 -15.45447 -15.31801 -15.09183 -15.01805 -14.41323 -14.23776 -14.03957 -13.86886 -13.70121 -13.46520 -13.29420 -13.08541 -12.83103 -12.74907 -12.68046 -12.59868 -12.57282 -12.43451 -12.13650 -12.10438 -12.09037 -12.03732 -11.91810 -11.89645 -11.54639 -11.49782 -11.31124 -11.24553 -10.80986 -10.39921 -9.54677 -8.12333 -5.87026 -0.40260 1.51351 1.52496 1.60507 2.15990 2.52734 2.68529 3.00177 3.31911 3.41220 3.60355 3.65450 3.71509 3.77843 3.88761 4.06122 4.27278 4.30173 4.33572 4.46302 4.52751 4.54076 4.58482 4.60005 4.70496 4.71029 4.76439 4.77820 4.80511 4.86379 4.94924 5.01065 5.05975 5.08169 5.19758 5.22797 5.25953 5.29696 5.33540 5.45986 5.53498 5.65822 6.00464 6.33829 6.54555 7.15792 7.50844 8.89582 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.022753 B = 0.002969 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.311872 B = 9429.109865 C = 9683.543949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.861 5.861 4 C -0.307 4.307 5 H 0.095 0.905 6 C -0.010 4.010 7 N -0.899 5.899 8 Si 0.975 3.025 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.258 1.258 12 S 2.557 3.443 13 O -1.000 7.000 14 O -1.024 7.024 15 C -0.596 4.596 16 C -0.080 4.080 17 H 0.079 0.921 18 C -0.175 4.175 19 C 0.080 3.920 20 O -0.396 6.396 21 C 0.073 3.927 22 C -0.148 4.148 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.126 4.126 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.063 0.937 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.307 10.158 13.781 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.029 4.029 3 N -0.693 5.693 4 C -0.441 4.441 5 H 0.112 0.888 6 C -0.213 4.213 7 N -0.539 5.539 8 Si 0.799 3.201 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.183 1.183 12 S 2.662 3.338 13 O -0.990 6.990 14 O -1.014 7.014 15 C -0.727 4.727 16 C -0.100 4.100 17 H 0.097 0.903 18 C -0.233 4.233 19 C 0.003 3.997 20 O -0.316 6.316 21 C 0.016 3.984 22 C -0.185 4.185 23 C -0.158 4.158 24 C -0.158 4.158 25 C -0.164 4.164 26 H 0.090 0.910 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.170 0.830 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.157 10.019 14.261 22.454 hybrid contribution -0.269 0.013 -1.147 1.178 sum -14.426 10.031 13.114 21.925 Atomic orbital electron populations 1.22123 0.95301 1.02046 1.01870 1.21382 0.94386 0.83896 1.03186 1.52720 1.77740 1.21023 1.17774 1.19275 1.45334 0.94208 0.85264 0.88785 1.26129 0.94987 0.97265 1.02953 1.70106 1.35501 1.18483 1.29842 0.85280 0.79413 0.77937 0.77474 1.19766 1.21309 1.18284 1.06714 0.78070 0.74459 0.74593 1.93412 1.59544 1.63799 1.82283 1.93396 1.83652 1.54502 1.69898 1.30439 1.22067 1.13376 1.06847 1.20813 0.98028 0.97732 0.93400 0.90270 1.22220 0.98779 0.98708 1.03554 1.22475 0.95057 0.97556 0.84630 1.87885 1.34134 1.77308 1.32233 1.23309 0.87367 0.93668 0.94052 1.23041 1.00584 0.95385 0.99535 1.22278 0.99450 1.00005 0.94078 1.22085 1.00825 0.95006 0.97853 1.22233 1.01779 0.99210 0.93147 0.90986 0.92293 0.92625 0.89340 0.93103 0.92483 0.82887 0.83031 0.90692 0.90059 0.93220 0.91401 0.91466 0.90470 0.91004 0.91633 0.90556 0.90714 0.91480 0.90332 0.91844 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 10.21 71.98 0.73 -4.60 16 2 C 0.10 4.49 5.98 86.38 0.52 5.00 16 3 N -0.86 -41.91 2.78 -343.45 -0.95 -42.86 16 4 C -0.31 -15.91 8.78 84.03 0.74 -15.18 16 5 H 0.09 4.65 7.94 -2.91 -0.02 4.62 16 6 C -0.01 -0.54 4.98 84.86 0.42 -0.12 16 7 N -0.90 -50.26 11.28 21.65 0.24 -50.02 16 8 Si 0.97 40.91 29.62 68.60 2.03 42.94 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 12 S 2.56 114.81 5.04 -56.49 -0.28 114.52 16 13 O -1.00 -51.61 14.97 -127.65 -1.91 -53.52 16 14 O -1.02 -51.10 16.53 -127.65 -2.11 -53.21 16 15 C -0.60 -18.07 5.62 71.98 0.40 -17.67 16 16 C -0.08 -2.28 2.62 -10.79 -0.03 -2.30 16 17 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 18 C -0.18 -5.30 8.78 71.98 0.63 -4.67 16 19 C 0.08 1.79 5.16 71.98 0.37 2.16 16 20 O -0.40 -9.35 9.60 -148.98 -1.43 -10.78 16 21 C 0.07 1.31 3.35 31.79 0.11 1.42 16 22 C -0.15 -2.33 6.65 32.01 0.21 -2.11 16 23 C -0.12 -1.43 6.82 31.67 0.22 -1.21 16 24 C -0.12 -1.45 6.80 31.32 0.21 -1.24 16 25 C -0.13 -1.99 6.56 31.32 0.21 -1.79 16 26 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 1.70 6.98 -2.39 -0.02 1.69 16 28 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 4.55 5.31 -2.39 -0.01 4.54 16 30 H 0.05 2.34 6.81 -2.38 -0.02 2.32 16 31 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.15 3.82 6.98 -2.39 -0.02 3.80 16 33 H 0.15 4.07 8.14 -2.39 -0.02 4.05 16 34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.08 2.23 7.82 -2.39 -0.02 2.21 16 36 H 0.05 1.79 5.61 -2.39 -0.01 1.78 16 37 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.19 7.82 -2.38 -0.02 1.17 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 1.18 8.07 -2.39 -0.02 1.16 16 47 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.87 379.03 1.25 -68.62 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.92 Total: 26.60 kcal Atomic # 6 Polarization: -47.04 SS G_CDS: 4.75 Total: -42.30 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -0.71 Total: -92.88 kcal Atomic # 8 Polarization: -112.06 SS G_CDS: -5.45 Total: -117.51 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 114.81 SS G_CDS: -0.28 Total: 114.52 kcal Total: -69.87 1.25 -68.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346428991.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.973 kcal (2) G-P(sol) polarization free energy of solvation -69.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds