Wall clock time and date at job start Tue Mar 31 2020 12:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.46918 * 2 1 4 4 C 1.36932 * 120.00303 * 268.70136 * 3 2 1 5 5 H 1.08001 * 119.99667 * 191.21867 * 4 3 2 6 6 C 1.38991 * 119.99687 * 11.21764 * 4 3 2 7 7 N 1.31400 * 120.00297 * 8.89537 * 6 4 3 8 8 Si 1.86805 * 120.00058 * 188.89648 * 6 4 3 9 9 H 1.48504 * 109.46993 * 90.00032 * 8 6 4 10 10 H 1.48500 * 109.47438 * 209.99887 * 8 6 4 11 11 H 1.48496 * 109.46836 * 330.00460 * 8 6 4 12 12 C 1.34779 * 119.99933 * 88.70283 * 3 2 1 13 13 O 1.21650 * 119.99963 * 185.10702 * 12 3 2 14 14 C 1.47209 * 119.99796 * 5.10345 * 12 3 2 15 15 C 1.39894 * 120.13693 * 54.95773 * 14 12 3 16 16 C 1.36553 * 120.07793 * 179.75901 * 15 14 12 17 17 C 1.39180 * 120.37228 * 0.51693 * 16 15 14 18 18 O 1.35719 * 119.85529 * 179.75694 * 17 16 15 19 19 C 1.42902 * 117.00144 * 359.72265 * 18 17 16 20 20 C 1.38723 * 120.28488 * 359.48086 * 17 16 15 21 21 C 1.38457 * 119.91014 * 0.25589 * 20 17 16 22 22 O 1.35661 * 120.18400 * 180.02562 * 21 20 17 23 23 C 1.42902 * 116.99747 * 0.02562 * 22 21 20 24 24 C 1.53005 * 109.46785 * 179.97438 * 23 22 21 25 25 C 1.53003 * 117.49672 * 243.61949 * 24 23 22 26 26 C 1.52997 * 117.49673 * 174.99794 * 24 23 22 27 27 H 1.08999 * 109.47135 * 60.00034 * 1 2 3 28 28 H 1.09007 * 109.47007 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47308 * 299.99420 * 1 2 3 30 30 H 1.09001 * 109.47308 * 240.00580 * 2 1 3 31 31 H 1.09002 * 109.47390 * 120.00425 * 2 1 3 32 32 H 0.97000 * 119.99702 * 179.97438 * 7 6 4 33 33 H 1.07995 * 119.96553 * 0.02562 * 15 14 12 34 34 H 1.07994 * 119.81375 * 180.27098 * 16 15 14 35 35 H 1.08998 * 109.47031 * 300.00467 * 19 18 17 36 36 H 1.09002 * 109.46850 * 59.99986 * 19 18 17 37 37 H 1.09001 * 109.47052 * 180.02562 * 19 18 17 38 38 H 1.08003 * 120.04088 * 180.27311 * 20 17 16 39 39 H 1.08994 * 109.47067 * 299.99366 * 23 22 21 40 40 H 1.08998 * 109.47243 * 60.00147 * 23 22 21 41 41 H 1.08997 * 115.54914 * 29.32833 * 24 23 22 42 42 H 1.08996 * 117.49966 * 0.02562 * 25 24 23 43 43 H 1.08999 * 117.49227 * 145.02359 * 25 24 23 44 44 H 1.09000 * 117.49848 * 214.98019 * 26 24 23 45 45 H 1.09001 * 117.50020 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2718 2.0178 -1.1855 5 1 2.7983 2.9608 -1.1902 6 6 1.8515 1.4504 -2.3827 7 7 1.0631 0.3993 -2.3706 8 14 2.4076 2.1821 -4.0091 9 1 3.6750 1.5358 -4.4350 10 1 1.3633 1.9503 -5.0391 11 1 2.6268 3.6417 -3.8460 12 6 2.2179 2.0254 1.1669 13 8 2.5337 3.2002 1.1669 14 6 2.0538 1.3073 2.4415 15 6 2.7682 0.1286 2.6806 16 6 2.6188 -0.5339 3.8653 17 6 1.7489 -0.0493 4.8377 18 8 1.6047 -0.7188 6.0094 19 6 2.3711 -1.9138 6.1724 20 6 1.0329 1.1181 4.6167 21 6 1.1795 1.8022 3.4218 22 8 0.4824 2.9447 3.2001 23 6 -0.3870 3.3873 4.2443 24 6 -1.0815 4.6814 3.8154 25 6 -0.7856 5.9443 4.6269 26 6 -2.1461 5.2557 4.7523 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.7696 0.0036 -3.2062 33 1 3.4420 -0.2556 1.9292 34 1 3.1757 -1.4411 4.0471 35 1 2.1028 -2.6267 5.3927 36 1 3.4327 -1.6775 6.0988 37 1 2.1623 -2.3490 7.1497 38 1 0.3622 1.4930 5.3757 39 1 -1.1363 2.6209 4.4424 40 1 0.1942 3.5696 5.1482 41 1 -1.2393 4.7972 2.7432 42 1 -0.0958 5.8533 5.4659 43 1 -0.7486 6.8913 4.0883 44 1 -3.0041 5.7497 4.2963 45 1 -2.3514 4.7119 5.6743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350036747.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:35:27 Heat of formation + Delta-G solvation = -50.903245 kcal Electronic energy + Delta-G solvation = -27625.343282 eV Core-core repulsion = 23803.071658 eV Total energy + Delta-G solvation = -3822.271623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77585 -40.26274 -40.03051 -38.16071 -37.10757 -36.95970 -33.71346 -31.89139 -31.23647 -31.04146 -28.56606 -28.18902 -26.79675 -24.61049 -23.55606 -23.37187 -23.18229 -21.78377 -20.99248 -19.69104 -18.81770 -18.21692 -17.92878 -17.26532 -17.06088 -16.79421 -16.55600 -16.22547 -15.89723 -15.54803 -15.46461 -15.34002 -14.81400 -14.60920 -14.45945 -13.90464 -13.69726 -13.50354 -13.28386 -13.18176 -13.04342 -12.84571 -12.66487 -12.59113 -12.39984 -12.22616 -12.17357 -12.02004 -11.91703 -11.84973 -11.50628 -11.43756 -10.92272 -10.79288 -10.36935 -9.73871 -9.56091 -9.01496 -8.18958 -5.85901 0.13797 0.36821 1.39199 1.42260 1.54340 2.02265 2.05483 2.28238 2.34499 2.66920 2.85003 3.09363 3.23886 3.64653 3.77408 3.84571 3.94635 4.00467 4.07006 4.14905 4.21695 4.29456 4.47217 4.48214 4.49259 4.51926 4.54561 4.62627 4.72241 4.82357 4.86994 4.95036 4.98501 4.99579 5.13273 5.14523 5.20025 5.23441 5.33402 5.41545 5.51680 5.58987 5.91972 6.10794 6.31108 6.47261 6.61024 7.21120 7.52202 8.10084 8.70204 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009804 B = 0.004909 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.379001 B = 5702.992385 C = 7797.947058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.120 3.880 3 N -0.446 5.446 4 C -0.336 4.336 5 H 0.069 0.931 6 C -0.004 4.004 7 N -0.878 5.878 8 Si 0.992 3.008 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.283 1.283 12 C 0.483 3.517 13 O -0.637 6.637 14 C -0.196 4.196 15 C -0.021 4.021 16 C -0.233 4.233 17 C 0.178 3.822 18 O -0.322 6.322 19 C 0.014 3.986 20 C -0.250 4.250 21 C 0.188 3.812 22 O -0.323 6.323 23 C 0.085 3.915 24 C -0.188 4.188 25 C -0.176 4.176 26 C -0.140 4.140 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.008 0.992 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.272 0.728 33 H 0.138 0.862 34 H 0.169 0.831 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.111 0.889 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.358 -5.774 16.942 18.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.002 4.002 3 N -0.163 5.163 4 C -0.464 4.464 5 H 0.087 0.913 6 C -0.204 4.204 7 N -0.518 5.518 8 Si 0.816 3.184 9 H -0.191 1.191 10 H -0.195 1.195 11 H -0.208 1.208 12 C 0.273 3.727 13 O -0.525 6.525 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.252 4.252 17 C 0.132 3.868 18 O -0.235 6.235 19 C -0.080 4.080 20 C -0.270 4.270 21 C 0.140 3.860 22 O -0.236 6.236 23 C 0.011 3.989 24 C -0.207 4.207 25 C -0.213 4.213 26 C -0.176 4.176 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.027 0.973 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.156 0.844 34 H 0.186 0.814 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.143 0.857 38 H 0.174 0.826 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.129 0.871 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.442 -5.195 16.757 17.879 hybrid contribution 0.321 0.483 -1.195 1.329 sum -3.121 -4.713 15.562 16.557 Atomic orbital electron populations 1.21941 0.96533 1.00455 0.99483 1.21787 0.94887 0.82097 1.01408 1.43934 1.55400 1.12821 1.04113 1.19692 1.35834 1.06704 0.84137 0.91252 1.25967 0.95470 0.97174 1.01827 1.70204 1.31493 1.22154 1.27946 0.84956 0.78416 0.77972 0.77054 1.19069 1.19493 1.20826 1.18240 0.83852 0.86265 0.84360 1.90545 1.55737 1.18323 1.87944 1.19300 1.05091 1.00161 0.95411 1.20700 0.95486 0.90647 0.97138 1.21030 1.05079 1.04837 0.94239 1.18788 0.92271 0.90429 0.85352 1.86000 1.65191 1.39454 1.32848 1.23472 0.95939 0.83740 1.04884 1.20354 1.09525 0.98842 0.98232 1.18711 0.89841 0.85202 0.92238 1.86229 1.55317 1.37799 1.44226 1.22589 0.91732 0.95612 0.88981 1.22070 1.05817 0.94166 0.98610 1.23182 1.00111 0.95759 1.02241 1.23104 0.92375 1.01758 1.00400 0.92004 0.91981 0.97284 0.88488 0.91937 0.91772 0.84397 0.81404 0.91288 0.91344 0.85716 0.82585 0.90137 0.90369 0.89484 0.87638 0.88412 0.87078 0.86411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 9.60 71.98 0.69 -5.13 16 2 C 0.12 5.74 5.13 86.38 0.44 6.18 16 3 N -0.45 -24.90 2.62 -639.49 -1.68 -26.57 16 4 C -0.34 -20.05 9.48 84.08 0.80 -19.25 16 5 H 0.07 4.48 7.26 -2.91 -0.02 4.46 16 6 C 0.00 -0.19 5.25 84.94 0.45 0.26 16 7 N -0.88 -45.55 7.61 21.67 0.17 -45.39 16 8 Si 0.99 43.47 29.56 68.60 2.03 45.50 16 9 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 10 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 C 0.48 27.16 6.72 86.60 0.58 27.75 16 13 O -0.64 -41.35 16.42 -1.97 -0.03 -41.38 16 14 C -0.20 -8.79 4.96 -20.00 -0.10 -8.89 16 15 C -0.02 -0.74 7.48 22.28 0.17 -0.58 16 16 C -0.23 -6.36 8.96 22.10 0.20 -6.16 16 17 C 0.18 4.97 6.69 22.61 0.15 5.12 16 18 O -0.32 -7.19 10.48 -90.41 -0.95 -8.14 16 19 C 0.01 0.17 9.80 113.37 1.11 1.29 16 20 C -0.25 -7.92 8.97 22.44 0.20 -7.71 16 21 C 0.19 7.65 6.69 22.84 0.15 7.81 16 22 O -0.32 -13.88 9.36 -87.55 -0.82 -14.70 16 23 C 0.09 2.55 5.02 71.98 0.36 2.91 16 24 C -0.19 -5.32 6.06 -10.79 -0.07 -5.39 16 25 C -0.18 -3.97 10.18 30.60 0.31 -3.66 16 26 C -0.14 -2.63 10.25 30.59 0.31 -2.32 16 27 H 0.06 3.22 6.14 -2.39 -0.01 3.21 16 28 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.10 4.86 5.83 -2.39 -0.01 4.85 16 31 H 0.06 2.59 4.42 -2.39 -0.01 2.58 16 32 H 0.27 13.14 8.31 -92.71 -0.77 12.37 16 33 H 0.14 4.69 7.42 -2.91 -0.02 4.66 16 34 H 0.17 3.17 6.26 -2.91 -0.02 3.15 16 35 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 36 H 0.07 0.76 7.64 -2.39 -0.02 0.74 16 37 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.16 4.07 6.31 -2.91 -0.02 4.06 16 39 H 0.08 2.07 7.66 -2.39 -0.02 2.05 16 40 H 0.08 2.01 7.40 -2.39 -0.02 2.00 16 41 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 42 H 0.11 2.14 8.03 -2.39 -0.02 2.12 16 43 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -77.65 365.94 5.48 -72.16 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 1.00 Total: 26.30 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.76 Total: -7.78 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -1.51 Total: -71.96 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -1.80 Total: -64.23 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -77.65 5.48 -72.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350036747.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.259 kcal (2) G-P(sol) polarization free energy of solvation -77.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds