Wall clock time and date at job start Tue Mar 31 2020 13:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47293 * 2 1 4 4 C 1.42903 * 114.00206 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.52057 * 329.87547 * 4 3 2 6 6 C 1.53086 * 109.52534 * 90.00317 * 4 3 2 7 7 O 1.42896 * 109.41528 * 177.51528 * 6 4 3 8 8 C 1.42899 * 114.10228 * 298.83898 * 7 6 4 9 9 C 1.53090 * 109.41092 * 61.15952 * 8 7 6 10 10 C 1.53180 * 109.21611 * 302.35987 * 9 8 7 11 11 H 1.09000 * 109.54638 * 176.88170 * 10 9 8 12 12 N 1.46500 * 109.54506 * 297.14994 * 10 9 8 13 13 C 1.34780 * 119.99650 * 274.99838 * 12 10 9 14 14 O 1.21550 * 120.00169 * 359.97438 * 13 12 10 15 15 C 1.47890 * 119.99739 * 179.97438 * 13 12 10 16 16 C 1.39920 * 120.02644 * 0.02562 * 15 13 12 17 17 C 1.38326 * 120.35848 * 179.97438 * 16 15 13 18 18 C 1.37757 * 120.41325 * 0.02562 * 17 16 15 19 19 C 1.40748 * 120.03673 * 0.02562 * 18 17 16 20 20 C 1.41443 * 120.17688 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99450 * 24.33572 * 20 19 18 22 22 C 1.39939 * 119.99844 * 204.34134 * 20 19 18 23 23 N 1.30821 * 120.00338 * 17.71149 * 22 20 19 24 24 Si 1.86801 * 119.99536 * 197.71424 * 22 20 19 25 25 H 1.48497 * 109.47193 * 60.00073 * 24 22 20 26 26 H 1.48498 * 109.46835 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47027 * 299.99737 * 24 22 20 28 28 C 1.38999 * 120.02309 * 179.72565 * 15 13 12 29 29 H 1.08994 * 109.47022 * 299.99821 * 1 2 3 30 30 H 1.09000 * 109.46955 * 59.99442 * 1 2 3 31 31 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46978 * 240.00374 * 2 1 3 33 33 H 1.09000 * 109.46955 * 120.00558 * 2 1 3 34 34 H 1.08997 * 109.48396 * 57.52950 * 6 4 3 35 35 H 1.09004 * 109.47775 * 297.49872 * 6 4 3 36 36 H 1.08997 * 109.47903 * 301.17955 * 8 7 6 37 37 H 1.08999 * 109.49335 * 181.14541 * 8 7 6 38 38 H 1.08994 * 109.52869 * 62.30190 * 9 8 7 39 39 H 1.09005 * 109.52380 * 182.42810 * 9 8 7 40 40 H 0.97001 * 120.00387 * 94.99928 * 12 10 9 41 41 H 1.07997 * 119.81940 * 359.97438 * 16 15 13 42 42 H 1.08000 * 119.79419 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.97889 * 180.02562 * 18 17 16 44 44 H 0.96997 * 120.00129 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.19839 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8644 0.6029 0.5147 6 6 3.9404 1.5007 -1.4436 7 8 5.3591 1.6717 -1.4419 8 6 5.7999 2.8847 -0.8283 9 6 5.3652 2.8996 0.6395 10 6 3.8425 2.7515 0.7159 11 1 3.5324 2.7058 1.7599 12 7 3.2052 3.8979 0.0633 13 6 2.9987 5.0371 0.7534 14 8 3.3408 5.1130 1.9173 15 6 2.3559 6.1946 0.0945 16 6 1.9615 6.1075 -1.2451 17 6 1.3592 7.1858 -1.8680 18 6 1.1412 8.3576 -1.1774 19 6 1.5322 8.4642 0.1704 20 6 1.3093 9.6658 0.8825 21 1 0.5265 10.3412 0.5702 22 6 2.1030 9.9795 1.9915 23 7 3.2469 9.3705 2.1704 24 14 1.5291 11.2678 3.2163 25 1 0.2350 10.8452 3.8094 26 1 2.5427 11.4146 4.2916 27 1 1.3539 12.5684 2.5211 28 6 2.1375 7.3677 0.8074 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4745 2.3336 -1.9703 35 1 3.6874 0.5664 -1.9449 36 1 5.3583 3.7357 -1.3468 37 1 6.8865 2.9476 -0.8862 38 1 5.8386 2.0722 1.1681 39 1 5.6628 3.8426 1.0980 40 1 2.9319 3.8372 -0.8654 41 1 2.1282 5.1935 -1.7957 42 1 1.0588 7.1087 -2.9025 43 1 0.6700 9.1949 -1.6706 44 1 3.7973 9.5882 2.9389 45 1 2.4356 7.4375 1.8431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353187022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:12 Heat of formation + Delta-G solvation = -115.754706 kcal Electronic energy + Delta-G solvation = -27343.653155 eV Core-core repulsion = 23518.569361 eV Total energy + Delta-G solvation = -3825.083794 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.43224 -38.67988 -37.61246 -36.94860 -34.62930 -33.72778 -31.80776 -31.48787 -29.98829 -29.47075 -29.27935 -25.46815 -24.98568 -23.69150 -22.75518 -22.73525 -20.96124 -20.09719 -19.19875 -17.89429 -17.25255 -16.63308 -16.41962 -16.01092 -15.59978 -15.27360 -15.11979 -15.03767 -14.63749 -14.18440 -13.92039 -13.49982 -13.21669 -13.18554 -12.82427 -12.70938 -12.52659 -12.48447 -12.39771 -12.04515 -11.72812 -11.62885 -11.39860 -11.19327 -11.12443 -11.04728 -10.74074 -10.58900 -10.49661 -10.18211 -10.01494 -9.68345 -9.31888 -9.20008 -9.00065 -8.65190 -7.61519 -7.50834 -6.79203 -4.40445 2.22874 2.83359 3.08031 3.09684 3.17643 3.22773 3.66595 3.81808 3.88268 3.92994 4.46669 4.57544 4.65716 4.81336 4.86575 4.90026 4.96080 5.03200 5.13958 5.24443 5.42721 5.44551 5.54277 5.61957 5.66476 5.72492 5.75359 5.83937 5.95749 6.01627 6.03277 6.11902 6.29088 6.72966 6.77144 6.91244 6.99870 7.03301 7.13317 7.22362 7.39449 7.71405 7.77281 7.93793 8.10583 8.20369 8.51516 8.81247 8.84645 8.97305 10.15560 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.003374 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.725127 B = 8297.088894 C = 8619.296699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.051 3.949 5 H 0.080 0.920 6 C 0.040 3.960 7 O -0.377 6.377 8 C 0.057 3.943 9 C -0.165 4.165 10 C 0.151 3.849 11 H 0.095 0.905 12 N -0.723 5.723 13 C 0.567 3.433 14 O -0.547 6.547 15 C -0.127 4.127 16 C -0.216 4.216 17 C -0.098 4.098 18 C -0.212 4.212 19 C 0.099 3.901 20 C -0.461 4.461 21 H 0.081 0.919 22 C 0.074 3.926 23 N -0.784 5.784 24 Si 0.910 3.090 25 H -0.263 1.263 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.092 4.092 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.398 0.602 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.285 0.715 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.343 -16.177 -4.545 16.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.286 6.286 4 C -0.008 4.008 5 H 0.098 0.902 6 C -0.037 4.037 7 O -0.296 6.296 8 C -0.019 4.019 9 C -0.204 4.204 10 C 0.045 3.955 11 H 0.113 0.887 12 N -0.378 5.378 13 C 0.358 3.642 14 O -0.425 6.425 15 C -0.130 4.130 16 C -0.236 4.236 17 C -0.116 4.116 18 C -0.232 4.232 19 C 0.097 3.903 20 C -0.490 4.490 21 H 0.099 0.901 22 C -0.145 4.145 23 N -0.408 5.408 24 Si 0.734 3.266 25 H -0.187 1.187 26 H -0.202 1.202 27 H -0.190 1.190 28 C -0.112 4.112 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.235 0.765 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.811 -16.102 -3.615 16.602 hybrid contribution -0.306 0.456 0.182 0.578 sum 1.505 -15.646 -3.433 16.089 Atomic orbital electron populations 1.21738 0.93538 1.02081 1.03551 1.22561 0.95878 0.83831 0.99908 1.88052 1.19400 1.26211 1.94916 1.23035 0.82406 0.98452 0.96887 0.90204 1.23008 0.82065 1.02630 0.96013 1.87931 1.20675 1.41362 1.79636 1.22658 1.00204 0.86819 0.92259 1.22618 0.95455 1.04335 0.97979 1.20944 0.91821 0.84122 0.98616 0.88653 1.45894 1.63351 1.12822 1.15696 1.18830 0.77205 0.82407 0.85745 1.90686 1.51908 1.82964 1.16943 1.19461 1.04682 0.94036 0.94832 1.20321 1.10266 0.98446 0.94593 1.20426 0.99631 0.93872 0.97654 1.21096 1.10010 0.97351 0.94751 1.17589 0.89657 0.92494 0.90579 1.19561 1.15351 1.04322 1.09775 0.90134 1.25953 0.93621 0.97024 0.97911 1.69778 1.07960 1.36486 1.26556 0.86331 0.79689 0.80757 0.79773 1.18724 1.20232 1.18982 1.21629 0.99467 0.89844 1.00262 0.91644 0.91675 0.91216 0.93446 0.93344 0.92200 0.88685 0.92303 0.88445 0.90290 0.89129 0.76517 0.89436 0.88949 0.88649 0.90418 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.37 -4.62 9.81 -35.23 -0.35 -4.97 16 4 C 0.05 0.59 2.53 -26.52 -0.07 0.53 16 5 H 0.08 0.81 7.79 -51.93 -0.40 0.40 16 6 C 0.04 0.44 6.29 37.20 0.23 0.67 16 7 O -0.38 -4.54 10.76 -35.23 -0.38 -4.92 16 8 C 0.06 0.68 6.68 37.20 0.25 0.93 16 9 C -0.16 -2.12 5.79 -26.59 -0.15 -2.27 16 10 C 0.15 2.17 2.53 -67.67 -0.17 2.00 16 11 H 0.10 1.55 7.59 -51.93 -0.39 1.16 16 12 N -0.72 -12.24 4.17 -54.48 -0.23 -12.47 16 13 C 0.57 12.44 7.74 -12.31 -0.10 12.35 16 14 O -0.55 -13.60 16.00 5.32 0.09 -13.52 16 15 C -0.13 -3.02 5.87 -105.03 -0.62 -3.64 16 16 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 17 C -0.10 -2.10 10.01 -39.73 -0.40 -2.50 16 18 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 19 C 0.10 2.64 5.57 -106.87 -0.60 2.04 16 20 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 21 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 22 C 0.07 1.88 5.14 -17.35 -0.09 1.79 16 23 N -0.78 -20.76 10.96 55.55 0.61 -20.16 16 24 Si 0.91 18.85 29.59 -169.99 -5.03 13.82 16 25 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 26 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 27 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 28 C -0.09 -2.46 8.24 -38.44 -0.32 -2.78 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.37 7.93 -51.92 -0.41 -0.05 16 33 H 0.05 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.06 0.68 6.72 -51.93 -0.35 0.33 16 35 H 0.10 0.86 7.93 -51.93 -0.41 0.45 16 36 H 0.06 0.76 7.75 -51.93 -0.40 0.36 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.40 6.20 5.09 -40.82 -0.21 6.00 16 41 H 0.09 1.58 6.38 -52.49 -0.33 1.24 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 44 H 0.28 6.95 8.30 -40.82 -0.34 6.62 16 45 H 0.13 3.86 5.75 -52.49 -0.30 3.56 16 LS Contribution 366.34 15.07 5.52 5.52 Total: -1.00 -30.11 366.34 -8.83 -38.94 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -6.57 Total: 11.77 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.49 Total: -14.01 kcal Atomic # 7 Polarization: -33.01 SS G_CDS: 0.38 Total: -32.62 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.64 Total: -23.41 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.11 -8.83 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.817 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds