Wall clock time and date at job start Tue Mar 31 2020 13:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42894 * 109.47293 * 2 1 4 4 C 1.42903 * 114.00206 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.52057 * 329.87547 * 4 3 2 6 6 C 1.53086 * 109.52534 * 90.00317 * 4 3 2 7 7 O 1.42896 * 109.41528 * 177.51528 * 6 4 3 8 8 C 1.42899 * 114.10228 * 298.83898 * 7 6 4 9 9 C 1.53090 * 109.41092 * 61.15952 * 8 7 6 10 10 C 1.53180 * 109.21611 * 302.35987 * 9 8 7 11 11 H 1.09000 * 109.54638 * 176.88170 * 10 9 8 12 12 N 1.46500 * 109.54506 * 297.14994 * 10 9 8 13 13 C 1.34780 * 119.99650 * 274.99838 * 12 10 9 14 14 O 1.21550 * 120.00169 * 359.97438 * 13 12 10 15 15 C 1.47890 * 119.99739 * 179.97438 * 13 12 10 16 16 C 1.39920 * 120.02644 * 0.02562 * 15 13 12 17 17 C 1.38326 * 120.35848 * 179.97438 * 16 15 13 18 18 C 1.37757 * 120.41325 * 0.02562 * 17 16 15 19 19 C 1.40748 * 120.03673 * 0.02562 * 18 17 16 20 20 C 1.41443 * 120.17688 * 180.02562 * 19 18 17 21 21 H 1.08002 * 119.99450 * 24.33572 * 20 19 18 22 22 C 1.39939 * 119.99844 * 204.34134 * 20 19 18 23 23 N 1.30821 * 120.00338 * 17.71149 * 22 20 19 24 24 Si 1.86801 * 119.99536 * 197.71424 * 22 20 19 25 25 H 1.48497 * 109.47193 * 60.00073 * 24 22 20 26 26 H 1.48498 * 109.46835 * 180.02562 * 24 22 20 27 27 H 1.48508 * 109.47027 * 299.99737 * 24 22 20 28 28 C 1.38999 * 120.02309 * 179.72565 * 15 13 12 29 29 H 1.08994 * 109.47022 * 299.99821 * 1 2 3 30 30 H 1.09000 * 109.46955 * 59.99442 * 1 2 3 31 31 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46978 * 240.00374 * 2 1 3 33 33 H 1.09000 * 109.46955 * 120.00558 * 2 1 3 34 34 H 1.08997 * 109.48396 * 57.52950 * 6 4 3 35 35 H 1.09004 * 109.47775 * 297.49872 * 6 4 3 36 36 H 1.08997 * 109.47903 * 301.17955 * 8 7 6 37 37 H 1.08999 * 109.49335 * 181.14541 * 8 7 6 38 38 H 1.08994 * 109.52869 * 62.30190 * 9 8 7 39 39 H 1.09005 * 109.52380 * 182.42810 * 9 8 7 40 40 H 0.97001 * 120.00387 * 94.99928 * 12 10 9 41 41 H 1.07997 * 119.81940 * 359.97438 * 16 15 13 42 42 H 1.08000 * 119.79419 * 179.97438 * 17 16 15 43 43 H 1.07996 * 119.97889 * 180.02562 * 18 17 16 44 44 H 0.96997 * 120.00129 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.19839 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 1 3.8644 0.6029 0.5147 6 6 3.9404 1.5007 -1.4436 7 8 5.3591 1.6717 -1.4419 8 6 5.7999 2.8847 -0.8283 9 6 5.3652 2.8996 0.6395 10 6 3.8425 2.7515 0.7159 11 1 3.5324 2.7058 1.7599 12 7 3.2052 3.8979 0.0633 13 6 2.9987 5.0371 0.7534 14 8 3.3408 5.1130 1.9173 15 6 2.3559 6.1946 0.0945 16 6 1.9615 6.1075 -1.2451 17 6 1.3592 7.1858 -1.8680 18 6 1.1412 8.3576 -1.1774 19 6 1.5322 8.4642 0.1704 20 6 1.3093 9.6658 0.8825 21 1 0.5265 10.3412 0.5702 22 6 2.1030 9.9795 1.9915 23 7 3.2469 9.3705 2.1704 24 14 1.5291 11.2678 3.2163 25 1 0.2350 10.8452 3.8094 26 1 2.5427 11.4146 4.2916 27 1 1.3539 12.5684 2.5211 28 6 2.1375 7.3677 0.8074 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.4745 2.3336 -1.9703 35 1 3.6874 0.5664 -1.9449 36 1 5.3583 3.7357 -1.3468 37 1 6.8865 2.9476 -0.8862 38 1 5.8386 2.0722 1.1681 39 1 5.6628 3.8426 1.0980 40 1 2.9319 3.8372 -0.8654 41 1 2.1282 5.1935 -1.7957 42 1 1.0588 7.1087 -2.9025 43 1 0.6700 9.1949 -1.6706 44 1 3.7973 9.5882 2.9389 45 1 2.4356 7.4375 1.8431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353187022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:12 Heat of formation + Delta-G solvation = -134.854957 kcal Electronic energy + Delta-G solvation = -27344.481404 eV Core-core repulsion = 23518.569361 eV Total energy + Delta-G solvation = -3825.912043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.64640 -40.19727 -38.75570 -38.47777 -36.00225 -35.57734 -33.05089 -32.50281 -31.53975 -31.24375 -30.39745 -27.26114 -26.19927 -24.62020 -24.35742 -23.50529 -22.81594 -21.59262 -20.59496 -19.62605 -18.36228 -17.86439 -17.57175 -17.23890 -16.92082 -16.74646 -16.44122 -16.23043 -16.08265 -15.59418 -15.41601 -15.05004 -14.62687 -14.45070 -14.29480 -14.16178 -13.77301 -13.54797 -13.46324 -13.27682 -13.02352 -12.92335 -12.81327 -12.56228 -12.50991 -12.25111 -12.20110 -12.06180 -11.90360 -11.54433 -11.49770 -11.07341 -11.06964 -10.78565 -10.24125 -10.14082 -9.48130 -9.39704 -8.67098 -6.38859 0.37439 1.00558 1.35850 1.47420 1.50307 2.08844 2.15392 2.19064 2.43795 2.78168 2.93576 3.49670 3.65572 3.70607 3.83794 3.91463 3.98836 4.03495 4.18701 4.26864 4.31173 4.40402 4.49518 4.55850 4.58014 4.65590 4.70375 4.77489 4.83766 4.89857 4.96091 4.98593 5.04401 5.07970 5.18068 5.27708 5.30286 5.44380 5.51415 5.85121 5.91592 5.96683 6.04222 6.27350 6.27760 6.48220 6.65522 6.87120 6.93764 7.29304 8.29569 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.003374 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.725127 B = 8297.088894 C = 8619.296699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.393 6.393 4 C 0.060 3.940 5 H 0.101 0.899 6 C 0.040 3.960 7 O -0.378 6.378 8 C 0.061 3.939 9 C -0.160 4.160 10 C 0.142 3.858 11 H 0.071 0.929 12 N -0.700 5.700 13 C 0.564 3.436 14 O -0.587 6.587 15 C -0.138 4.138 16 C -0.199 4.199 17 C -0.094 4.094 18 C -0.218 4.218 19 C 0.069 3.931 20 C -0.499 4.499 21 H 0.084 0.916 22 C 0.031 3.969 23 N -0.824 5.824 24 Si 0.983 3.017 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.252 1.252 28 C -0.130 4.130 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.122 0.878 36 H 0.046 0.954 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.407 0.593 41 H 0.129 0.871 42 H 0.138 0.862 43 H 0.109 0.891 44 H 0.287 0.713 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -18.246 -6.702 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.002 3.998 5 H 0.119 0.881 6 C -0.037 4.037 7 O -0.297 6.297 8 C -0.015 4.015 9 C -0.198 4.198 10 C 0.037 3.963 11 H 0.089 0.911 12 N -0.353 5.353 13 C 0.354 3.646 14 O -0.468 6.468 15 C -0.141 4.141 16 C -0.218 4.218 17 C -0.112 4.112 18 C -0.237 4.237 19 C 0.067 3.933 20 C -0.528 4.528 21 H 0.103 0.897 22 C -0.185 4.185 23 N -0.449 5.449 24 Si 0.803 3.197 25 H -0.186 1.186 26 H -0.196 1.196 27 H -0.176 1.176 28 C -0.151 4.151 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.065 0.935 37 H 0.135 0.865 38 H 0.121 0.879 39 H 0.081 0.919 40 H 0.246 0.754 41 H 0.147 0.853 42 H 0.156 0.844 43 H 0.127 0.873 44 H 0.097 0.903 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.584 -18.214 -5.827 19.189 hybrid contribution -0.266 0.904 0.715 1.183 sum 1.318 -17.310 -5.111 18.097 Atomic orbital electron populations 1.21771 0.93433 1.03337 1.02345 1.22794 0.96018 0.82531 1.01450 1.88021 1.19675 1.28482 1.95103 1.22963 0.82496 0.97000 0.97371 0.88102 1.23122 0.81389 1.03870 0.95316 1.87944 1.21332 1.40985 1.79392 1.22640 1.01334 0.86589 0.90976 1.22559 0.94250 1.03873 0.99161 1.21188 0.92802 0.84604 0.97657 0.91106 1.45685 1.61915 1.12004 1.15696 1.18695 0.77160 0.83363 0.85360 1.90660 1.53727 1.83770 1.18687 1.19779 1.04396 0.93872 0.96064 1.20776 1.07741 0.99953 0.93364 1.20902 0.98184 0.92590 0.99541 1.21404 1.09450 0.98966 0.93929 1.17935 0.90596 0.92703 0.92101 1.19858 1.16386 1.05005 1.11566 0.89746 1.26849 0.93209 0.99075 0.99323 1.69881 1.09275 1.38434 1.27328 0.85244 0.79004 0.78247 0.77209 1.18566 1.19615 1.17562 1.21430 1.02475 0.91775 0.99377 0.93441 0.92247 0.88773 0.91154 0.92440 0.92606 0.86011 0.93522 0.86529 0.87942 0.91854 0.75427 0.85349 0.84426 0.87274 0.90290 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 10.28 71.98 0.74 -1.60 16 2 C 0.05 0.76 6.47 71.98 0.47 1.22 16 3 O -0.39 -9.05 9.81 -148.98 -1.46 -10.51 16 4 C 0.06 1.26 2.53 30.73 0.08 1.33 16 5 H 0.10 1.70 7.79 -2.38 -0.02 1.68 16 6 C 0.04 0.73 6.29 72.01 0.45 1.19 16 7 O -0.38 -7.85 10.76 -148.98 -1.60 -9.45 16 8 C 0.06 1.33 6.68 72.01 0.48 1.81 16 9 C -0.16 -3.96 5.79 30.68 0.18 -3.78 16 10 C 0.14 4.01 2.53 45.16 0.11 4.13 16 11 H 0.07 2.37 7.59 -2.39 -0.02 2.35 16 12 N -0.70 -23.36 4.17 -444.57 -1.85 -25.21 16 13 C 0.56 25.48 7.74 86.80 0.67 26.15 16 14 O -0.59 -30.95 16.00 -3.87 -0.06 -31.02 16 15 C -0.14 -6.70 5.87 -20.13 -0.12 -6.82 16 16 C -0.20 -8.08 9.55 22.70 0.22 -7.87 16 17 C -0.09 -3.82 10.01 22.18 0.22 -3.60 16 18 C -0.22 -10.33 9.78 22.77 0.22 -10.10 16 19 C 0.07 3.80 5.57 -21.32 -0.12 3.68 16 20 C -0.50 -27.49 9.05 23.47 0.21 -27.28 16 21 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 22 C 0.03 1.62 5.14 85.26 0.44 2.05 16 23 N -0.82 -46.34 10.96 21.82 0.24 -46.10 16 24 Si 0.98 39.98 29.59 68.60 2.03 42.01 16 25 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 27 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 28 C -0.13 -7.35 8.24 23.01 0.19 -7.17 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 0.80 7.93 -2.38 -0.02 0.78 16 33 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.06 1.07 6.72 -2.39 -0.02 1.06 16 35 H 0.12 1.63 7.93 -2.38 -0.02 1.61 16 36 H 0.05 1.13 7.75 -2.39 -0.02 1.11 16 37 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 39 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.41 11.90 5.09 -92.71 -0.47 11.42 16 41 H 0.13 4.12 6.38 -2.91 -0.02 4.10 16 42 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 43 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 44 H 0.29 14.88 8.30 -92.71 -0.77 14.12 16 45 H 0.10 6.20 5.75 -2.91 -0.02 6.18 16 Total: -1.00 -70.35 366.34 2.27 -68.08 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: 0.53 Total: 38.85 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 4.45 Total: -26.64 kcal Atomic # 7 Polarization: -69.70 SS G_CDS: -1.61 Total: -71.31 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -3.13 Total: -50.98 kcal Atomic # 14 Polarization: 39.98 SS G_CDS: 2.03 Total: 42.01 kcal Total: -70.35 2.27 -68.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353187022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.774 kcal (2) G-P(sol) polarization free energy of solvation -70.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds