Wall clock time and date at job start Tue Mar 31 2020 13:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47352 * 2 1 4 4 C 1.42900 * 114.00361 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.56751 * 29.84606 * 4 3 2 6 6 C 1.53086 * 109.52190 * 269.68734 * 4 3 2 7 7 O 1.42907 * 109.41289 * 182.48203 * 6 4 3 8 8 C 1.42903 * 114.09868 * 61.15654 * 7 6 4 9 9 C 1.53089 * 109.41594 * 298.84547 * 8 7 6 10 10 C 1.53176 * 109.52255 * 149.99736 * 4 3 2 11 11 H 1.09004 * 109.61954 * 56.97989 * 10 4 3 12 12 N 1.46500 * 109.54512 * 296.75933 * 10 4 3 13 13 C 1.34780 * 119.99921 * 155.44568 * 12 10 4 14 14 O 1.21580 * 119.99933 * 359.97438 * 13 12 10 15 15 C 1.47639 * 119.99777 * 179.97438 * 13 12 10 16 16 C 1.40019 * 119.89460 * 179.97438 * 15 13 12 17 17 C 1.36314 * 120.10336 * 180.29671 * 16 15 13 18 18 C 1.40889 * 119.89505 * 359.47895 * 17 16 15 19 19 C 1.41106 * 120.10279 * 180.27237 * 18 17 16 20 20 H 1.07999 * 119.99765 * 204.77887 * 19 18 17 21 21 C 1.40226 * 120.00411 * 24.77997 * 19 18 17 22 22 N 1.30648 * 119.99679 * 17.73117 * 21 19 18 23 23 Si 1.86794 * 120.00389 * 197.73440 * 21 19 18 24 24 H 1.48507 * 109.47232 * 59.99620 * 23 21 19 25 25 H 1.48498 * 109.47237 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47185 * 299.99698 * 23 21 19 27 27 C 1.40888 * 119.79010 * 0.52003 * 18 17 16 28 28 C 1.36308 * 119.89404 * 359.73034 * 27 18 17 29 29 H 1.09001 * 109.46849 * 300.00172 * 1 2 3 30 30 H 1.09003 * 109.47062 * 59.99887 * 1 2 3 31 31 H 1.08996 * 109.47484 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46849 * 239.99827 * 2 1 3 33 33 H 1.09003 * 109.47062 * 120.00113 * 2 1 3 34 34 H 1.08999 * 109.48312 * 62.50258 * 6 4 3 35 35 H 1.08997 * 109.48440 * 302.46304 * 6 4 3 36 36 H 1.08994 * 109.48416 * 178.85787 * 8 7 6 37 37 H 1.09007 * 109.48272 * 58.82369 * 8 7 6 38 38 H 1.08999 * 109.52085 * 297.70169 * 9 8 7 39 39 H 1.09003 * 109.57566 * 177.54395 * 9 8 7 40 40 H 0.96998 * 120.00103 * 335.44129 * 12 10 4 41 41 H 1.08001 * 119.94580 * 0.02562 * 16 15 13 42 42 H 1.07999 * 120.04961 * 179.70046 * 17 16 15 43 43 H 0.96998 * 119.99944 * 180.02562 * 22 21 19 44 44 H 1.07998 * 120.05166 * 179.75681 * 27 18 17 45 45 H 1.08002 * 119.95080 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8654 0.6008 -0.5102 6 6 3.9397 1.5086 1.4436 7 8 5.3585 1.6795 1.4416 8 6 5.7995 2.8891 0.8215 9 6 5.3654 2.8961 -0.6465 10 6 3.8428 2.7468 -0.7213 11 1 3.3684 3.6032 -0.2421 12 7 3.4255 2.6768 -2.1239 13 6 3.2183 3.8106 -2.8227 14 8 3.3772 4.8913 -2.2888 15 6 2.7983 3.7401 -4.2363 16 6 2.5831 4.9193 -4.9600 17 6 2.1894 4.8591 -6.2637 18 6 2.0097 3.6080 -6.8860 19 6 1.6079 3.5407 -8.2369 20 1 1.0934 2.6650 -8.6042 21 6 1.8765 4.6106 -9.1026 22 7 2.7777 5.5003 -8.7813 23 14 0.9459 4.7640 -10.7149 24 1 -0.5082 4.8831 -10.4378 25 1 1.4113 5.9722 -11.4421 26 1 1.1942 3.5589 -11.5464 27 6 2.2274 2.4242 -6.1536 28 6 2.6160 2.4943 -4.8489 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6865 0.5770 1.9498 35 1 3.4736 2.3443 1.9655 36 1 6.8861 2.9522 0.8796 37 1 5.3578 3.7430 1.3353 38 1 5.8390 2.0658 -1.1703 39 1 5.6624 3.8366 -1.1107 40 1 3.2984 1.8146 -2.5497 41 1 2.7251 5.8779 -4.4833 42 1 2.0191 5.7692 -6.8197 43 1 2.9633 6.2406 -9.3799 44 1 2.0871 1.4629 -6.6253 45 1 2.7828 1.5875 -4.2865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353237860.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:30 Heat of formation + Delta-G solvation = -140.173030 kcal Electronic energy + Delta-G solvation = -26779.187284 eV Core-core repulsion = 22953.044632 eV Total energy + Delta-G solvation = -3826.142652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.40570 -40.22433 -38.84402 -38.49054 -36.02226 -35.69889 -32.98041 -32.47001 -31.81312 -31.19951 -30.42114 -27.85407 -25.72330 -24.55056 -23.72651 -23.46708 -22.72025 -21.59894 -21.22464 -19.37844 -18.79581 -17.98050 -17.62003 -17.42096 -17.06077 -16.47659 -16.21887 -16.04075 -15.75644 -15.44561 -15.29740 -15.20354 -14.86129 -14.44287 -14.19220 -14.16100 -14.01577 -13.63813 -13.41492 -13.23451 -13.17004 -12.83874 -12.67773 -12.56470 -12.54642 -12.35350 -12.21176 -12.05313 -11.80086 -11.56717 -11.36717 -11.12379 -11.05793 -10.81739 -10.27569 -10.07049 -9.58157 -9.42565 -8.79716 -6.49235 0.43654 1.14207 1.37430 1.44075 1.51712 2.10562 2.17160 2.25818 2.41798 2.78313 2.95597 3.50435 3.67926 3.76037 3.86949 3.94247 4.08828 4.12266 4.20204 4.30418 4.31526 4.34965 4.40165 4.49956 4.55946 4.60337 4.68527 4.80562 4.85503 4.94373 4.96123 5.00842 5.04364 5.07630 5.19763 5.24904 5.28598 5.53689 5.57913 5.77490 5.94398 5.96905 6.00624 6.19103 6.28442 6.54800 6.68839 6.75669 6.88513 7.43112 8.15285 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019649 B = 0.002850 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.667336 B = 9821.179850 C =10791.882288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.393 6.393 4 C 0.059 3.941 5 H 0.088 0.912 6 C 0.048 3.952 7 O -0.382 6.382 8 C 0.065 3.935 9 C -0.159 4.159 10 C 0.147 3.853 11 H 0.066 0.934 12 N -0.712 5.712 13 C 0.574 3.426 14 O -0.606 6.606 15 C -0.294 4.294 16 C -0.050 4.050 17 C -0.202 4.202 18 C 0.102 3.898 19 C -0.472 4.472 20 H 0.093 0.907 21 C 0.034 3.966 22 N -0.803 5.803 23 Si 0.989 3.011 24 H -0.258 1.258 25 H -0.268 1.268 26 H -0.252 1.252 27 C -0.246 4.246 28 C -0.036 4.036 29 H 0.059 0.941 30 H 0.047 0.953 31 H 0.093 0.907 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.121 0.879 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.406 0.594 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.295 0.705 44 H 0.116 0.884 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.149 -11.549 14.026 18.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.000 4.000 5 H 0.106 0.894 6 C -0.030 4.030 7 O -0.301 6.301 8 C -0.012 4.012 9 C -0.198 4.198 10 C 0.042 3.958 11 H 0.084 0.916 12 N -0.363 5.363 13 C 0.368 3.632 14 O -0.491 6.491 15 C -0.298 4.298 16 C -0.069 4.069 17 C -0.222 4.222 18 C 0.098 3.902 19 C -0.500 4.500 20 H 0.111 0.889 21 C -0.185 4.185 22 N -0.427 5.427 23 Si 0.809 3.191 24 H -0.183 1.183 25 H -0.192 1.192 26 H -0.176 1.176 27 C -0.265 4.265 28 C -0.055 4.055 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.139 0.861 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.242 0.758 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.134 0.866 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.399 -10.584 14.418 17.940 hybrid contribution -0.388 0.359 -1.208 1.319 sum 1.011 -10.225 13.209 16.735 Atomic orbital electron populations 1.21768 0.93413 1.03354 1.02327 1.22791 0.96048 0.82542 1.01437 1.88009 1.19747 1.28465 1.95107 1.22975 0.82366 0.97330 0.97288 0.89368 1.23080 0.81204 1.04012 0.94706 1.87941 1.21430 1.41683 1.79036 1.22692 1.01659 0.86838 0.90039 1.22602 0.94336 1.03550 0.99321 1.21084 0.94826 0.98225 0.81701 0.91574 1.45618 1.70451 1.08530 1.11685 1.18395 0.74983 0.83421 0.86398 1.90607 1.56061 1.30093 1.72294 1.19173 1.22295 0.94597 0.93738 1.20542 0.95885 0.96506 0.94003 1.20934 1.09134 0.98325 0.93796 1.18133 0.86652 0.91775 0.93596 1.20142 1.32225 1.03334 0.94255 0.88910 1.27027 0.93705 0.93399 1.04378 1.69798 1.23595 1.10793 1.38467 0.85135 0.79135 0.79276 0.75592 1.18264 1.19231 1.17619 1.20929 1.12386 0.97398 0.95784 1.20648 0.95126 0.95338 0.94388 0.92177 0.93426 0.88846 0.92429 0.91236 0.86130 0.92252 0.86099 0.92474 0.89769 0.91491 0.75765 0.89179 0.87828 0.89345 0.86563 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.79 6.47 71.98 0.47 1.26 16 3 O -0.39 -9.26 9.92 -148.98 -1.48 -10.74 16 4 C 0.06 1.26 2.31 30.68 0.07 1.33 16 5 H 0.09 1.61 7.79 -2.39 -0.02 1.59 16 6 C 0.05 0.86 6.47 72.01 0.47 1.32 16 7 O -0.38 -7.64 10.77 -148.98 -1.60 -9.25 16 8 C 0.06 1.25 6.84 72.01 0.49 1.74 16 9 C -0.16 -3.87 5.71 30.68 0.18 -3.70 16 10 C 0.15 4.10 2.22 45.11 0.10 4.20 16 11 H 0.07 2.23 7.59 -2.39 -0.02 2.21 16 12 N -0.71 -23.23 4.96 -445.03 -2.21 -25.43 16 13 C 0.57 24.78 7.73 86.73 0.67 25.45 16 14 O -0.61 -29.96 15.99 -3.97 -0.06 -30.03 16 15 C -0.29 -13.66 5.89 -19.93 -0.12 -13.78 16 16 C -0.05 -2.58 9.52 22.25 0.21 -2.37 16 17 C -0.20 -10.89 8.63 22.47 0.19 -10.69 16 18 C 0.10 5.30 5.57 -21.28 -0.12 5.18 16 19 C -0.47 -23.80 9.04 23.46 0.21 -23.58 16 20 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 21 C 0.03 1.60 5.14 85.35 0.44 2.04 16 22 N -0.80 -40.35 10.95 21.87 0.24 -40.11 16 23 Si 0.99 35.38 29.60 68.60 2.03 37.41 16 24 H -0.26 -9.10 7.11 99.48 0.71 -8.40 16 25 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 26 H -0.25 -8.57 7.11 99.48 0.71 -7.86 16 27 C -0.25 -11.25 9.73 22.47 0.22 -11.03 16 28 C -0.04 -1.51 9.47 22.25 0.21 -1.30 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.07 0.84 7.96 -2.39 -0.02 0.82 16 34 H 0.12 1.61 7.96 -2.39 -0.02 1.59 16 35 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.41 11.36 6.60 -92.71 -0.61 10.75 16 41 H 0.09 4.69 7.63 -2.91 -0.02 4.67 16 42 H 0.10 5.78 6.16 -2.91 -0.02 5.76 16 43 H 0.30 13.35 8.29 -92.71 -0.77 12.58 16 44 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 45 H 0.13 4.19 6.37 -2.91 -0.02 4.17 16 Total: -1.00 -65.47 370.09 1.73 -63.74 By element: Atomic # 1 Polarization: 39.66 SS G_CDS: 0.39 Total: 40.05 kcal Atomic # 6 Polarization: -30.07 SS G_CDS: 4.43 Total: -25.64 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -1.97 Total: -65.54 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -3.14 Total: -50.01 kcal Atomic # 14 Polarization: 35.38 SS G_CDS: 2.03 Total: 37.41 kcal Total: -65.47 1.73 -63.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353237860.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.434 kcal (2) G-P(sol) polarization free energy of solvation -65.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds