Wall clock time and date at job start Tue Mar 31 2020 12:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42893 * 109.46925 * 2 1 4 4 C 1.35972 * 117.00020 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.98833 * 179.97438 * 4 3 2 6 6 C 1.38084 * 120.01486 * 180.02562 * 5 4 3 7 7 C 1.38842 * 119.98638 * 0.02562 * 6 5 4 8 8 N 1.40119 * 120.01461 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00135 * 304.48813 * 8 7 6 10 10 C 1.50702 * 109.47320 * 270.00419 * 9 8 7 11 11 H 1.07999 * 119.99769 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00232 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99799 * 179.72333 * 12 10 9 15 15 H 1.48494 * 109.47463 * 89.99632 * 14 12 10 16 16 H 1.48499 * 109.46871 * 209.99963 * 14 12 10 17 17 H 1.48504 * 109.47069 * 329.99608 * 14 12 10 18 18 C 1.34775 * 119.99695 * 124.48950 * 8 7 6 19 19 O 1.21293 * 120.00230 * 356.10796 * 18 8 7 20 20 C 1.50698 * 119.99744 * 176.10254 * 18 8 7 21 21 H 1.08999 * 110.43925 * 300.70509 * 20 18 8 22 22 C 1.54814 * 110.49028 * 178.15370 * 20 18 8 23 23 C 1.55219 * 101.99110 * 220.52519 * 22 20 18 24 24 O 1.44377 * 103.57065 * 36.87785 * 23 22 20 25 25 C 1.43751 * 106.97408 * 320.01679 * 24 23 22 26 26 C 1.38845 * 119.97060 * 0.25617 * 7 6 5 27 27 C 1.38092 * 119.98239 * 359.46779 * 26 7 6 28 28 H 1.09005 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47014 * 299.99832 * 1 2 3 30 30 H 1.09001 * 109.47280 * 60.00193 * 1 2 3 31 31 H 1.08999 * 109.46839 * 239.99757 * 2 1 3 32 32 H 1.08999 * 109.46539 * 119.99830 * 2 1 3 33 33 H 1.08005 * 119.98987 * 0.03078 * 5 4 3 34 34 H 1.08006 * 120.00747 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47002 * 149.99784 * 9 8 7 36 36 H 1.09002 * 109.46991 * 30.00248 * 9 8 7 37 37 H 0.96999 * 120.00386 * 180.02562 * 13 12 10 38 38 H 1.09002 * 110.90668 * 338.64861 * 22 20 18 39 39 H 1.08999 * 110.90407 * 102.24598 * 22 20 18 40 40 H 1.09010 * 110.51638 * 278.38428 * 23 22 20 41 41 H 1.09000 * 110.78016 * 155.50547 * 23 22 20 42 42 H 1.09001 * 109.87661 * 267.08358 * 25 24 23 43 43 H 1.09002 * 109.87760 * 145.93341 * 25 24 23 44 44 H 1.08004 * 120.00835 * 179.74700 * 26 7 6 45 45 H 1.08002 * 119.98995 * 180.29108 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3543 1.5254 0.0005 5 6 3.8842 2.8075 0.0000 6 6 5.2531 2.9891 0.0001 7 6 6.0991 1.8882 0.0000 8 7 7.4882 2.0718 -0.0005 9 6 8.1199 2.8797 -1.0466 10 6 8.4896 1.9956 -2.2097 11 1 8.2758 0.9376 -2.1730 12 6 9.1018 2.5372 -3.3201 13 7 9.3626 3.8254 -3.3644 14 14 9.5670 1.4400 -4.7584 15 1 8.4366 1.3776 -5.7193 16 1 10.7644 1.9962 -5.4382 17 1 9.8700 0.0739 -4.2612 18 6 8.2432 1.5051 0.9614 19 8 7.7145 0.8954 1.8669 20 6 9.7442 1.6289 0.9119 21 1 10.1314 1.1985 -0.0117 22 6 10.3856 0.9403 2.1412 23 6 11.5145 1.9372 2.5168 24 8 10.9270 3.2293 2.2528 25 6 10.1681 3.1051 1.0382 26 6 5.5681 0.6053 -0.0054 27 6 4.1990 0.4251 0.0004 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2259 3.6637 -0.0003 34 1 5.6655 3.9873 0.0001 35 1 9.0184 3.3513 -0.6486 36 1 7.4239 3.6488 -1.3817 37 1 9.7929 4.2066 -4.1458 38 1 9.6651 0.8449 2.9536 39 1 10.7967 -0.0326 1.8716 40 1 12.3900 1.7778 1.8873 41 1 11.7785 1.8435 3.5702 42 1 10.7850 3.3879 0.1852 43 1 9.2846 3.7416 1.0865 44 1 6.2257 -0.2514 -0.0095 45 1 3.7859 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354100559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:47 Heat of formation + Delta-G solvation = -88.665462 kcal Electronic energy + Delta-G solvation = -27334.770955 eV Core-core repulsion = 23510.861839 eV Total energy + Delta-G solvation = -3823.909116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43923 -39.64533 -38.30541 -36.91153 -34.97629 -32.71720 -32.03678 -31.63433 -30.63160 -29.49449 -28.12868 -27.03797 -24.05887 -23.76992 -22.67414 -22.52199 -21.68858 -20.77584 -18.80668 -18.07276 -16.99840 -16.66145 -16.15377 -16.06813 -15.99698 -15.72253 -15.39137 -14.65160 -14.28258 -14.26031 -14.04197 -13.42772 -13.31340 -13.24461 -13.07046 -12.71901 -12.55632 -12.43414 -12.15302 -11.86811 -11.66432 -11.62863 -11.54135 -11.19314 -11.09863 -10.96369 -10.82643 -10.69387 -10.58386 -10.55154 -10.23206 -9.88826 -9.60416 -9.09188 -8.66294 -8.62648 -8.50302 -7.30500 -6.26589 -4.34533 1.68758 1.75964 3.15953 3.17713 3.25434 3.28290 3.31071 3.67065 4.12775 4.21357 4.28246 4.77908 4.83263 4.87504 5.04849 5.08816 5.10898 5.18804 5.22705 5.25390 5.39624 5.43079 5.51586 5.66087 5.67457 5.72345 5.79029 5.86980 5.88990 5.95180 5.98480 6.17604 6.20803 6.24557 6.33932 6.43061 6.63210 6.70731 6.85130 6.97519 7.02383 7.18411 7.45808 7.64906 7.70461 7.93264 8.10515 8.66725 8.83487 9.33027 10.79789 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004460 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.059750 B = 6276.269645 C = 8131.056600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.320 6.320 4 C 0.108 3.892 5 C -0.138 4.138 6 C -0.090 4.090 7 C 0.143 3.857 8 N -0.553 5.553 9 C 0.225 3.775 10 C -0.540 4.540 11 H 0.061 0.939 12 C 0.068 3.932 13 N -0.888 5.888 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.529 3.471 19 O -0.554 6.554 20 C -0.136 4.136 21 H 0.122 0.878 22 C -0.141 4.141 23 C 0.047 3.953 24 O -0.382 6.382 25 C 0.063 3.937 26 C -0.072 4.072 27 C -0.195 4.195 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.054 0.946 36 H 0.041 0.959 37 H 0.267 0.733 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -5.120 6.695 10.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.063 3.937 5 C -0.157 4.157 6 C -0.110 4.110 7 C 0.051 3.949 8 N -0.278 5.278 9 C 0.106 3.894 10 C -0.578 4.578 11 H 0.079 0.921 12 C -0.135 4.135 13 N -0.526 5.526 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.198 1.198 18 C 0.319 3.681 19 O -0.433 6.433 20 C -0.157 4.157 21 H 0.140 0.860 22 C -0.179 4.179 23 C -0.030 4.030 24 O -0.301 6.301 25 C -0.014 4.014 26 C -0.092 4.092 27 C -0.214 4.214 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.072 0.928 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.077 0.923 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.140 0.860 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.927 -4.933 7.156 11.114 hybrid contribution 0.380 -1.005 -1.399 1.764 sum -6.547 -5.938 5.758 10.549 Atomic orbital electron populations 1.21764 0.93092 1.02562 1.03362 1.22708 0.95499 0.82561 1.01334 1.86030 1.19401 1.28690 1.89333 1.18850 0.81795 0.94129 0.98939 1.20145 0.94428 0.94622 1.06544 1.20921 0.91980 0.98698 0.99382 1.17531 0.83745 0.92779 1.00886 1.45946 1.03647 1.50686 1.27556 1.19884 0.94238 0.90756 0.84486 1.21399 1.40264 0.95164 1.00987 0.92078 1.24902 0.95241 0.95100 0.98298 1.69902 1.41641 1.10930 1.30134 0.86515 0.78187 0.80651 0.82285 1.20447 1.20942 1.19771 1.20295 0.89059 0.78010 0.80782 1.90617 1.74420 1.43020 1.35246 1.22613 0.93010 0.98201 1.01867 0.86038 1.23150 0.98080 0.98732 0.97976 1.23572 0.95496 0.82772 1.01122 1.88856 1.67226 1.30982 1.43029 1.23288 0.96139 0.94436 0.87542 1.20878 0.94178 0.96591 0.97511 1.20979 0.93695 0.97714 1.09035 0.90640 0.91654 0.91609 0.92181 0.92244 0.85282 0.85080 0.92846 0.94061 0.92341 0.88910 0.90157 0.92259 0.89242 0.90256 0.89473 0.86040 0.85824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 37.16 0.38 -0.87 16 2 C 0.05 0.59 5.46 37.16 0.20 0.80 16 3 O -0.32 -4.65 10.14 -19.65 -0.20 -4.85 16 4 C 0.11 1.75 6.69 -39.23 -0.26 1.49 16 5 C -0.14 -2.28 9.98 -39.46 -0.39 -2.67 16 6 C -0.09 -1.64 9.29 -39.41 -0.37 -2.01 16 7 C 0.14 2.89 5.22 -83.62 -0.44 2.45 16 8 N -0.55 -11.65 2.56 -114.70 -0.29 -11.94 16 9 C 0.22 5.12 4.60 -5.20 -0.02 5.10 16 10 C -0.54 -13.53 9.20 -34.44 -0.32 -13.85 16 11 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 12 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 13 N -0.89 -23.52 13.29 55.43 0.74 -22.79 16 14 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 C 0.53 10.88 6.68 -10.99 -0.07 10.80 16 19 O -0.55 -12.26 14.70 5.55 0.08 -12.18 16 20 C -0.14 -2.43 2.71 -90.24 -0.24 -2.67 16 21 H 0.12 2.23 7.95 -51.93 -0.41 1.82 16 22 C -0.14 -2.15 6.53 -24.60 -0.16 -2.31 16 23 C 0.05 0.65 7.72 38.33 0.30 0.95 16 24 O -0.38 -6.59 11.52 -35.23 -0.41 -6.99 16 25 C 0.06 1.11 5.42 37.73 0.20 1.32 16 26 C -0.07 -1.36 8.88 -39.41 -0.35 -1.71 16 27 C -0.19 -3.20 9.03 -39.46 -0.36 -3.56 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 33 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 34 H 0.13 2.24 7.75 -52.48 -0.41 1.84 16 35 H 0.05 1.20 4.03 -51.93 -0.21 0.99 16 36 H 0.04 1.00 7.26 -51.93 -0.38 0.62 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 38 H 0.09 1.54 6.90 -51.93 -0.36 1.18 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.08 1.43 7.77 -51.93 -0.40 1.03 16 43 H 0.09 1.62 6.69 -51.93 -0.35 1.27 16 44 H 0.12 2.33 7.98 -52.48 -0.42 1.91 16 45 H 0.12 1.68 6.29 -52.49 -0.33 1.35 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -29.31 367.19 -8.13 -37.43 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -6.56 Total: 5.87 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -2.00 Total: -5.09 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: 0.44 Total: -34.73 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.52 Total: -24.03 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.31 -8.13 -37.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354100559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.232 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds