Wall clock time and date at job start Tue Mar 31 2020 12:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42893 * 109.46925 * 2 1 4 4 C 1.35972 * 117.00020 * 179.97438 * 3 2 1 5 5 C 1.38723 * 119.98833 * 179.97438 * 4 3 2 6 6 C 1.38084 * 120.01486 * 180.02562 * 5 4 3 7 7 C 1.38842 * 119.98638 * 0.02562 * 6 5 4 8 8 N 1.40119 * 120.01461 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00135 * 304.48813 * 8 7 6 10 10 C 1.50702 * 109.47320 * 270.00419 * 9 8 7 11 11 H 1.07999 * 119.99769 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00232 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 119.99799 * 179.72333 * 12 10 9 15 15 H 1.48494 * 109.47463 * 89.99632 * 14 12 10 16 16 H 1.48499 * 109.46871 * 209.99963 * 14 12 10 17 17 H 1.48504 * 109.47069 * 329.99608 * 14 12 10 18 18 C 1.34775 * 119.99695 * 124.48950 * 8 7 6 19 19 O 1.21293 * 120.00230 * 356.10796 * 18 8 7 20 20 C 1.50698 * 119.99744 * 176.10254 * 18 8 7 21 21 H 1.08999 * 110.43925 * 300.70509 * 20 18 8 22 22 C 1.54814 * 110.49028 * 178.15370 * 20 18 8 23 23 C 1.55219 * 101.99110 * 220.52519 * 22 20 18 24 24 O 1.44377 * 103.57065 * 36.87785 * 23 22 20 25 25 C 1.43751 * 106.97408 * 320.01679 * 24 23 22 26 26 C 1.38845 * 119.97060 * 0.25617 * 7 6 5 27 27 C 1.38092 * 119.98239 * 359.46779 * 26 7 6 28 28 H 1.09005 * 109.47193 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47014 * 299.99832 * 1 2 3 30 30 H 1.09001 * 109.47280 * 60.00193 * 1 2 3 31 31 H 1.08999 * 109.46839 * 239.99757 * 2 1 3 32 32 H 1.08999 * 109.46539 * 119.99830 * 2 1 3 33 33 H 1.08005 * 119.98987 * 0.03078 * 5 4 3 34 34 H 1.08006 * 120.00747 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47002 * 149.99784 * 9 8 7 36 36 H 1.09002 * 109.46991 * 30.00248 * 9 8 7 37 37 H 0.96999 * 120.00386 * 180.02562 * 13 12 10 38 38 H 1.09002 * 110.90668 * 338.64861 * 22 20 18 39 39 H 1.08999 * 110.90407 * 102.24598 * 22 20 18 40 40 H 1.09010 * 110.51638 * 278.38428 * 23 22 20 41 41 H 1.09000 * 110.78016 * 155.50547 * 23 22 20 42 42 H 1.09001 * 109.87661 * 267.08358 * 25 24 23 43 43 H 1.09002 * 109.87760 * 145.93341 * 25 24 23 44 44 H 1.08004 * 120.00835 * 179.74700 * 26 7 6 45 45 H 1.08002 * 119.98995 * 180.29108 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3543 1.5254 0.0005 5 6 3.8842 2.8075 0.0000 6 6 5.2531 2.9891 0.0001 7 6 6.0991 1.8882 0.0000 8 7 7.4882 2.0718 -0.0005 9 6 8.1199 2.8797 -1.0466 10 6 8.4896 1.9956 -2.2097 11 1 8.2758 0.9376 -2.1730 12 6 9.1018 2.5372 -3.3201 13 7 9.3626 3.8254 -3.3644 14 14 9.5670 1.4400 -4.7584 15 1 8.4366 1.3776 -5.7193 16 1 10.7644 1.9962 -5.4382 17 1 9.8700 0.0739 -4.2612 18 6 8.2432 1.5051 0.9614 19 8 7.7145 0.8954 1.8669 20 6 9.7442 1.6289 0.9119 21 1 10.1314 1.1985 -0.0117 22 6 10.3856 0.9403 2.1412 23 6 11.5145 1.9372 2.5168 24 8 10.9270 3.2293 2.2528 25 6 10.1681 3.1051 1.0382 26 6 5.5681 0.6053 -0.0054 27 6 4.1990 0.4251 0.0004 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.2259 3.6637 -0.0003 34 1 5.6655 3.9873 0.0001 35 1 9.0184 3.3513 -0.6486 36 1 7.4239 3.6488 -1.3817 37 1 9.7929 4.2066 -4.1458 38 1 9.6651 0.8449 2.9536 39 1 10.7967 -0.0326 1.8716 40 1 12.3900 1.7778 1.8873 41 1 11.7785 1.8435 3.5702 42 1 10.7850 3.3879 0.1852 43 1 9.2846 3.7416 1.0865 44 1 6.2257 -0.2514 -0.0095 45 1 3.7859 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354100559.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:45 Heat of formation + Delta-G solvation = -104.816984 kcal Electronic energy + Delta-G solvation = -27335.471338 eV Core-core repulsion = 23510.861839 eV Total energy + Delta-G solvation = -3824.609499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.92927 -40.91472 -39.64327 -38.30773 -36.61410 -34.56266 -33.36728 -32.66882 -31.93657 -30.79792 -29.65709 -28.69744 -25.54905 -25.04899 -24.20873 -23.82053 -22.90764 -22.08271 -20.30732 -19.28244 -18.78753 -18.21352 -17.80728 -17.41839 -17.03236 -17.01555 -16.79371 -16.37455 -15.74007 -15.61917 -15.47809 -14.76205 -14.66280 -14.43644 -14.30111 -14.24780 -13.89825 -13.73277 -13.41838 -13.22607 -13.07473 -12.93195 -12.87127 -12.64853 -12.62553 -12.38516 -12.33868 -12.18207 -11.96234 -11.78992 -11.69978 -11.57974 -11.06742 -10.64063 -10.52709 -10.09245 -10.01376 -8.79178 -8.20826 -6.36295 0.30503 0.35025 1.40025 1.42505 1.50553 1.58468 2.07689 2.27151 2.40157 2.73847 2.93697 3.09740 3.41535 3.63912 3.79579 3.87007 3.91716 4.07232 4.15373 4.16857 4.27467 4.31790 4.35679 4.38697 4.40277 4.55545 4.63743 4.67962 4.76355 4.82298 4.88327 4.93022 4.96243 4.99183 5.05854 5.13319 5.18551 5.19863 5.31643 5.44473 5.56572 5.67164 5.84313 5.94409 6.01361 6.41379 6.45602 6.73691 7.17428 7.35452 8.83400 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.010131 B = 0.004460 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.059750 B = 6276.269645 C = 8131.056600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.326 6.326 4 C 0.113 3.887 5 C -0.139 4.139 6 C -0.100 4.100 7 C 0.104 3.896 8 N -0.553 5.553 9 C 0.238 3.762 10 C -0.546 4.546 11 H 0.050 0.950 12 C 0.028 3.972 13 N -0.914 5.914 14 Si 0.953 3.047 15 H -0.280 1.280 16 H -0.278 1.278 17 H -0.269 1.269 18 C 0.524 3.476 19 O -0.574 6.574 20 C -0.136 4.136 21 H 0.116 0.884 22 C -0.135 4.135 23 C 0.046 3.954 24 O -0.397 6.397 25 C 0.071 3.929 26 C -0.087 4.087 27 C -0.190 4.190 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.022 0.978 37 H 0.269 0.731 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.079 0.921 41 H 0.117 0.883 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.112 0.888 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 -6.386 6.759 11.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.240 6.240 4 C 0.068 3.932 5 C -0.158 4.158 6 C -0.120 4.120 7 C 0.012 3.988 8 N -0.279 5.279 9 C 0.119 3.881 10 C -0.585 4.585 11 H 0.068 0.932 12 C -0.173 4.173 13 N -0.553 5.553 14 Si 0.778 3.222 15 H -0.206 1.206 16 H -0.203 1.203 17 H -0.194 1.194 18 C 0.314 3.686 19 O -0.454 6.454 20 C -0.157 4.157 21 H 0.134 0.866 22 C -0.173 4.173 23 C -0.029 4.029 24 O -0.316 6.316 25 C -0.006 4.006 26 C -0.107 4.107 27 C -0.209 4.209 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.170 0.830 34 H 0.151 0.849 35 H 0.074 0.926 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.097 0.903 41 H 0.135 0.865 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.130 0.870 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.500 -6.210 7.228 12.127 hybrid contribution 0.409 -0.648 -1.376 1.575 sum -7.091 -6.858 5.852 11.470 Atomic orbital electron populations 1.21795 0.90994 1.04214 1.03307 1.23093 0.97207 0.80913 1.02127 1.86050 1.17968 1.31184 1.88816 1.18947 0.82807 0.93921 0.97526 1.20408 0.93942 0.95879 1.05523 1.21036 0.92797 0.98372 0.99747 1.17897 0.83561 0.94009 1.03299 1.45884 1.04354 1.50465 1.27159 1.19586 0.93809 0.90193 0.84525 1.21544 1.40168 0.94836 1.01927 0.93153 1.25548 0.95186 0.96158 1.00380 1.69984 1.42308 1.12151 1.30869 0.85632 0.77880 0.79242 0.79423 1.20561 1.20277 1.19350 1.20742 0.90094 0.77502 0.80268 1.90587 1.75079 1.43936 1.35826 1.22645 0.91300 0.98726 1.03029 0.86590 1.23149 0.98039 1.00060 0.96008 1.23838 0.95212 0.80604 1.03294 1.88836 1.67347 1.32977 1.42448 1.23074 0.95628 0.94052 0.87860 1.20917 0.95338 0.95805 0.98622 1.21218 0.92580 0.99323 1.07818 0.88132 0.91632 0.91753 0.91450 0.91340 0.82960 0.84916 0.92601 0.95985 0.92168 0.90377 0.87885 0.90272 0.86522 0.90729 0.90979 0.87030 0.83010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 10.28 71.98 0.74 -1.29 16 2 C 0.04 0.79 5.46 71.98 0.39 1.19 16 3 O -0.33 -8.82 10.14 -93.23 -0.95 -9.77 16 4 C 0.11 3.56 6.69 22.50 0.15 3.71 16 5 C -0.14 -4.49 9.98 22.35 0.22 -4.26 16 6 C -0.10 -3.73 9.29 22.38 0.21 -3.52 16 7 C 0.10 4.33 5.22 38.11 0.20 4.53 16 8 N -0.55 -24.20 2.56 -635.18 -1.63 -25.83 16 9 C 0.24 11.26 4.60 85.64 0.39 11.65 16 10 C -0.55 -27.93 9.20 25.60 0.24 -27.70 16 11 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 12 C 0.03 1.46 5.46 84.66 0.46 1.92 16 13 N -0.91 -48.88 13.29 21.45 0.28 -48.60 16 14 Si 0.95 40.96 29.54 68.60 2.03 42.99 16 15 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 18 C 0.52 22.14 6.68 87.66 0.59 22.72 16 19 O -0.57 -25.99 14.70 -3.07 -0.05 -26.04 16 20 C -0.14 -4.91 2.71 -10.55 -0.03 -4.94 16 21 H 0.12 4.31 7.95 -2.39 -0.02 4.29 16 22 C -0.13 -3.95 6.53 31.97 0.21 -3.74 16 23 C 0.05 1.19 7.72 72.74 0.56 1.75 16 24 O -0.40 -13.43 11.52 -148.98 -1.72 -15.14 16 25 C 0.07 2.56 5.42 72.36 0.39 2.95 16 26 C -0.09 -3.36 8.88 22.38 0.20 -3.16 16 27 C -0.19 -6.08 9.03 22.35 0.20 -5.88 16 28 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.22 7.66 -2.39 -0.02 1.20 16 32 H 0.07 1.21 7.66 -2.39 -0.02 1.20 16 33 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 34 H 0.13 4.74 7.75 -2.91 -0.02 4.72 16 35 H 0.06 2.61 4.03 -2.39 -0.01 2.60 16 36 H 0.02 1.12 7.26 -2.39 -0.02 1.10 16 37 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 38 H 0.08 2.55 6.90 -2.39 -0.02 2.53 16 39 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.07 2.74 7.77 -2.39 -0.02 2.73 16 43 H 0.07 2.79 6.69 -2.39 -0.02 2.78 16 44 H 0.11 4.42 7.98 -2.91 -0.02 4.40 16 45 H 0.15 3.84 6.29 -2.91 -0.02 3.82 16 Total: -1.00 -63.08 367.19 4.09 -58.99 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.99 Total: 27.46 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 5.12 Total: -4.06 kcal Atomic # 7 Polarization: -73.08 SS G_CDS: -1.34 Total: -74.42 kcal Atomic # 8 Polarization: -48.25 SS G_CDS: -2.71 Total: -50.95 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -63.08 4.09 -58.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354100559.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.831 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds