Wall clock time and date at job start Tue Mar 31 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45203 * 109.47278 * 2 1 4 4 C 1.34233 * 117.00038 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00233 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99576 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46839 * 180.02562 * 6 4 3 8 8 N 1.46502 * 109.46864 * 179.97438 * 7 6 4 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09003 * 109.47505 * 59.99886 * 1 2 3 29 29 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47145 * 299.99153 * 1 2 3 31 31 H 1.09001 * 109.47288 * 240.00325 * 2 1 3 32 32 H 1.08998 * 109.47781 * 120.00493 * 2 1 3 33 33 H 1.08998 * 109.47269 * 60.00232 * 6 4 3 34 34 H 1.09005 * 109.46959 * 299.99924 * 6 4 3 35 35 H 1.08998 * 109.47146 * 59.99979 * 7 6 4 36 36 H 1.08995 * 109.46642 * 299.99606 * 7 6 4 37 37 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 38 38 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 39 39 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 40 40 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 41 41 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 43 43 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 44 44 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 7 6.0085 4.2112 0.0010 9 6 7.3446 4.3877 0.0015 10 8 8.0834 3.4259 0.0014 11 6 7.9206 5.7803 0.0020 12 6 9.4486 5.7002 0.0018 13 1 9.7799 5.0780 0.8331 14 6 9.9198 5.0970 -1.2963 15 1 9.3176 5.1952 -2.1875 16 6 11.1196 4.4196 -1.3463 17 7 11.9146 4.4122 -0.2988 18 14 11.6194 3.5187 -2.9046 19 1 12.9455 2.8811 -2.7040 20 1 10.6106 2.4751 -3.2181 21 1 11.6994 4.4839 -4.0302 22 6 10.0242 7.0851 0.1503 23 6 9.8361 8.0225 -0.8481 24 6 10.3603 9.2941 -0.7098 25 6 11.0804 9.6255 0.4227 26 6 11.2730 8.6864 1.4187 27 6 10.7450 7.4162 1.2823 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5844 3.4693 0.8912 34 1 3.5850 3.4698 -0.8889 35 1 5.7845 2.3256 -0.8892 36 1 5.7845 2.3249 0.8908 37 1 5.4176 4.9804 0.0015 38 1 7.5845 6.3122 0.8921 39 1 7.5849 6.3128 -0.8879 40 1 11.6944 4.9454 0.4811 41 1 9.2769 7.7624 -1.7347 42 1 10.2096 10.0278 -1.4878 43 1 11.4923 10.6181 0.5295 44 1 11.8352 8.9454 2.3036 45 1 10.8953 6.6826 2.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355171947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:48 Heat of formation + Delta-G solvation = -115.221512 kcal Electronic energy + Delta-G solvation = -25875.048729 eV Core-core repulsion = 22049.988056 eV Total energy + Delta-G solvation = -3825.060673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.74037 -39.18806 -38.30444 -37.02384 -35.05418 -34.10968 -32.25445 -31.45393 -30.81384 -30.10647 -28.83587 -25.63263 -24.36003 -23.15490 -22.59417 -21.65954 -21.00079 -20.33577 -19.49477 -17.94394 -17.10318 -16.97331 -16.57561 -16.14920 -15.81192 -15.47704 -15.12440 -14.63356 -14.25325 -14.07041 -13.65292 -13.61048 -13.56285 -13.20768 -12.96949 -12.77359 -12.45545 -12.32684 -12.21086 -12.10044 -11.86499 -11.83952 -11.67121 -11.39203 -10.88700 -10.84656 -10.72973 -10.69332 -10.42805 -10.12031 -10.01512 -9.67404 -9.06472 -8.68921 -8.59293 -8.26108 -8.13559 -7.63221 -6.20264 -3.89380 1.96994 2.19317 2.23651 2.29865 3.46111 3.52290 3.58888 3.66781 3.73992 4.36842 4.55791 4.59432 4.62075 4.69325 4.70418 4.78174 4.90741 5.11462 5.34155 5.38851 5.42332 5.58107 5.59961 5.63582 5.64309 5.76550 5.79582 5.99196 6.04658 6.08604 6.16195 6.18579 6.32094 6.42429 6.68342 6.78371 6.79479 6.93284 7.21457 7.23266 7.38495 7.50142 7.73710 7.86150 7.97850 8.24189 8.53414 8.97489 9.01251 9.79539 11.19243 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.002680 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.227303 B =10445.819094 C =11734.182501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.466 3.534 5 O -0.499 6.499 6 C -0.124 4.124 7 C 0.132 3.868 8 N -0.751 5.751 9 C 0.513 3.487 10 O -0.493 6.493 11 C -0.115 4.115 12 C 0.072 3.928 13 H 0.050 0.950 14 C -0.568 4.568 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.060 2.940 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.291 1.291 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.393 0.607 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.582 1.582 2.019 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.307 3.693 5 O -0.386 6.386 6 C -0.162 4.162 7 C 0.008 3.992 8 N -0.408 5.408 9 C 0.299 3.701 10 O -0.364 6.364 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.068 0.932 14 C -0.605 4.605 15 H 0.063 0.937 16 C -0.174 4.174 17 N -0.541 5.541 18 Si 0.889 3.111 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.034 4.034 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.226 0.774 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -18.611 -0.481 1.372 18.667 hybrid contribution -1.430 1.223 0.521 1.952 sum -20.041 0.742 1.894 20.144 Atomic orbital electron populations 1.21807 0.92565 1.03031 1.03529 1.23045 0.95355 0.80100 1.02827 1.86490 1.24551 1.32578 1.84221 1.23475 0.80584 0.92565 0.72631 1.90738 1.60248 1.43119 1.44457 1.21534 0.96641 0.91596 1.06433 1.20913 0.88827 0.85476 1.03966 1.46123 1.07781 1.07269 1.79632 1.20884 0.80642 0.92837 0.75718 1.90776 1.58203 1.42316 1.45115 1.21660 0.99924 0.92382 1.01558 1.17870 0.87949 0.88730 1.00153 0.93226 1.21528 1.07466 1.37635 0.93920 0.93657 1.25578 0.93260 0.95894 1.02643 1.70734 1.38493 1.39380 1.05486 0.83689 0.76259 0.76417 0.74739 1.20939 1.21461 1.21742 1.20856 0.94685 0.96445 0.91389 1.20924 1.00435 0.92435 0.98631 1.21015 0.99492 0.96827 0.97503 1.20824 1.01981 0.98851 0.95394 1.20965 1.00475 0.94154 0.98691 1.21076 0.99694 0.95809 0.98232 0.91443 0.90193 0.91457 0.91090 0.91112 0.87043 0.86986 0.90771 0.90938 0.77352 0.91545 0.90173 0.91793 0.86676 0.87461 0.87599 0.87462 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.29 37.15 0.38 -0.42 16 2 C 0.06 0.49 6.19 37.15 0.23 0.72 16 3 O -0.36 -3.55 10.22 -39.26 -0.40 -3.95 16 4 C 0.47 5.27 7.96 36.01 0.29 5.56 16 5 O -0.50 -7.50 15.73 -18.75 -0.29 -7.79 16 6 C -0.12 -1.11 5.93 -27.88 -0.17 -1.27 16 7 C 0.13 1.80 4.96 -4.04 -0.02 1.78 16 8 N -0.75 -10.55 5.56 -60.29 -0.33 -10.89 16 9 C 0.51 10.12 7.58 -10.99 -0.08 10.03 16 10 O -0.49 -12.54 15.02 5.55 0.08 -12.46 16 11 C -0.11 -2.18 4.95 -27.88 -0.14 -2.32 16 12 C 0.07 1.72 1.23 -92.92 -0.11 1.61 16 13 H 0.05 1.35 6.59 -51.93 -0.34 1.01 16 14 C -0.57 -15.53 6.35 -34.44 -0.22 -15.75 16 15 H 0.05 1.24 7.82 -52.48 -0.41 0.83 16 16 C 0.03 0.93 5.45 -17.83 -0.10 0.83 16 17 N -0.91 -27.96 13.56 55.43 0.75 -27.21 16 18 Si 1.06 26.61 29.91 -169.99 -5.08 21.52 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.03 -0.73 4.53 -104.62 -0.47 -1.20 16 23 C -0.11 -2.15 8.90 -39.58 -0.35 -2.50 16 24 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 25 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 26 C -0.12 -2.28 10.05 -39.58 -0.40 -2.68 16 27 C -0.13 -2.70 9.18 -39.58 -0.36 -3.07 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 33 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 36 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 37 H 0.39 3.92 8.47 -40.82 -0.35 3.57 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 1.40 7.96 -51.93 -0.41 0.99 16 40 H 0.27 8.21 6.24 -40.82 -0.25 7.95 16 41 H 0.12 2.28 7.85 -52.48 -0.41 1.86 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 44 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 45 H 0.11 2.27 7.95 -52.49 -0.42 1.85 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -36.32 383.33 -8.71 -45.03 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.88 Total: 4.39 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.32 Total: -14.43 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.42 Total: -38.09 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.61 Total: -24.20 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -5.08 Total: 21.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.32 -8.71 -45.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355171947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.189 kcal (2) G-P(sol) polarization free energy of solvation -36.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds