Wall clock time and date at job start Tue Mar 31 2020 13:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45203 * 109.47278 * 2 1 4 4 C 1.34233 * 117.00038 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00233 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99576 * 180.02562 * 4 3 2 7 7 C 1.53005 * 109.46839 * 180.02562 * 6 4 3 8 8 N 1.46502 * 109.46864 * 179.97438 * 7 6 4 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09003 * 109.47505 * 59.99886 * 1 2 3 29 29 H 1.09001 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47145 * 299.99153 * 1 2 3 31 31 H 1.09001 * 109.47288 * 240.00325 * 2 1 3 32 32 H 1.08998 * 109.47781 * 120.00493 * 2 1 3 33 33 H 1.08998 * 109.47269 * 60.00232 * 6 4 3 34 34 H 1.09005 * 109.46959 * 299.99924 * 6 4 3 35 35 H 1.08998 * 109.47146 * 59.99979 * 7 6 4 36 36 H 1.08995 * 109.46642 * 299.99606 * 7 6 4 37 37 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 38 38 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 39 39 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 40 40 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 41 41 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 42 42 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 43 43 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 44 44 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 45 45 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 7 6.0085 4.2112 0.0010 9 6 7.3446 4.3877 0.0015 10 8 8.0834 3.4259 0.0014 11 6 7.9206 5.7803 0.0020 12 6 9.4486 5.7002 0.0018 13 1 9.7799 5.0780 0.8331 14 6 9.9198 5.0970 -1.2963 15 1 9.3176 5.1952 -2.1875 16 6 11.1196 4.4196 -1.3463 17 7 11.9146 4.4122 -0.2988 18 14 11.6194 3.5187 -2.9046 19 1 12.9455 2.8811 -2.7040 20 1 10.6106 2.4751 -3.2181 21 1 11.6994 4.4839 -4.0302 22 6 10.0242 7.0851 0.1503 23 6 9.8361 8.0225 -0.8481 24 6 10.3603 9.2941 -0.7098 25 6 11.0804 9.6255 0.4227 26 6 11.2730 8.6864 1.4187 27 6 10.7450 7.4162 1.2823 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.5844 3.4693 0.8912 34 1 3.5850 3.4698 -0.8889 35 1 5.7845 2.3256 -0.8892 36 1 5.7845 2.3249 0.8908 37 1 5.4176 4.9804 0.0015 38 1 7.5845 6.3122 0.8921 39 1 7.5849 6.3128 -0.8879 40 1 11.6944 4.9454 0.4811 41 1 9.2769 7.7624 -1.7347 42 1 10.2096 10.0278 -1.4878 43 1 11.4923 10.6181 0.5295 44 1 11.8352 8.9454 2.3036 45 1 10.8953 6.6826 2.0606 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355171947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:48 Heat of formation + Delta-G solvation = -138.663696 kcal Electronic energy + Delta-G solvation = -25876.065258 eV Core-core repulsion = 22049.988056 eV Total energy + Delta-G solvation = -3826.077202 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65189 -40.75471 -39.80958 -37.93185 -36.47563 -35.84417 -33.38378 -32.91253 -31.94670 -31.58755 -30.28489 -27.26258 -25.76050 -24.50333 -23.62277 -23.16380 -21.96268 -21.82459 -21.09899 -18.86476 -18.84193 -18.04111 -17.93467 -17.34035 -17.14714 -16.70595 -16.40215 -16.02717 -15.65893 -15.64760 -15.42487 -14.80834 -14.60852 -14.42034 -14.33108 -14.03119 -13.90484 -13.66448 -13.43530 -13.16943 -13.00996 -12.97073 -12.74090 -12.62913 -12.51366 -12.47208 -12.07416 -11.95281 -11.70953 -11.68271 -11.56766 -11.49041 -10.79639 -10.58009 -10.36830 -10.05016 -9.62319 -9.25630 -8.43939 -6.10807 0.69588 0.75249 1.08521 1.45937 1.47060 1.58073 1.73313 1.88423 2.44039 2.62215 3.12368 3.36758 3.46808 3.87022 3.95154 4.00230 4.06433 4.11504 4.15294 4.29950 4.31573 4.32644 4.40406 4.46214 4.51154 4.64693 4.74353 4.83213 4.84418 4.86718 4.90916 4.91572 5.12387 5.13745 5.25354 5.40935 5.42218 5.44821 5.50608 5.76500 5.83961 5.95958 6.25336 6.32507 6.42018 6.63501 6.72038 6.79317 7.52322 7.64510 8.96429 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.015016 B = 0.002680 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.227303 B =10445.819094 C =11734.182501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.467 3.533 5 O -0.546 6.546 6 C -0.108 4.108 7 C 0.134 3.866 8 N -0.721 5.721 9 C 0.509 3.491 10 O -0.563 6.563 11 C -0.108 4.108 12 C 0.072 3.928 13 H 0.002 0.998 14 C -0.557 4.557 15 H 0.041 0.959 16 C -0.027 4.027 17 N -0.945 5.945 18 Si 1.096 2.904 19 H -0.290 1.290 20 H -0.289 1.289 21 H -0.264 1.264 22 C -0.056 4.056 23 C -0.120 4.120 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.126 4.126 27 C -0.153 4.153 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.419 0.581 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.146 0.854 44 H 0.134 0.866 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.957 4.781 1.228 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.272 6.272 4 C 0.311 3.689 5 O -0.436 6.436 6 C -0.145 4.145 7 C 0.009 3.991 8 N -0.378 5.378 9 C 0.297 3.703 10 O -0.439 6.439 11 C -0.148 4.148 12 C 0.053 3.947 13 H 0.020 0.980 14 C -0.595 4.595 15 H 0.059 0.941 16 C -0.226 4.226 17 N -0.583 5.583 18 Si 0.920 3.080 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.189 1.189 22 C -0.057 4.057 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.162 4.162 26 C -0.143 4.143 27 C -0.171 4.171 28 H 0.090 0.910 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.257 0.743 38 H 0.116 0.884 39 H 0.120 0.880 40 H 0.071 0.929 41 H 0.134 0.866 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.152 0.848 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.090 2.784 0.572 21.280 hybrid contribution -0.814 0.290 0.830 1.198 sum -21.904 3.074 1.401 22.163 Atomic orbital electron populations 1.21817 0.90073 1.04365 1.03933 1.23302 0.97279 0.79261 1.02421 1.86493 1.23481 1.33601 1.83627 1.23905 0.80815 0.92897 0.71257 1.90734 1.61315 1.44769 1.46812 1.21471 0.92474 0.90825 1.09752 1.20814 0.92339 0.84390 1.01521 1.45720 1.06282 1.08677 1.77126 1.21102 0.82042 0.92331 0.74830 1.90759 1.60319 1.44163 1.48699 1.21566 0.96712 0.92537 1.04032 1.17703 0.91150 0.89243 0.96582 0.97972 1.21820 1.06275 1.36323 0.95037 0.94070 1.26720 0.94257 0.97231 1.04348 1.70813 1.39846 1.41445 1.06237 0.83223 0.75513 0.76111 0.73104 1.21544 1.21515 1.18879 1.20615 0.96166 0.95869 0.93033 1.21012 1.01379 0.93382 0.98077 1.21411 0.98061 0.96258 0.98502 1.21307 1.00469 1.00178 0.94222 1.21291 0.99845 0.93058 1.00155 1.21122 1.00775 0.97103 0.98098 0.91027 0.88431 0.90978 0.91643 0.91569 0.83440 0.83631 0.93663 0.93346 0.74280 0.88398 0.87979 0.92889 0.86639 0.83910 0.83603 0.84805 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.78 6.19 71.98 0.45 1.23 16 3 O -0.36 -6.45 10.22 -51.44 -0.53 -6.98 16 4 C 0.47 10.21 7.96 71.24 0.57 10.77 16 5 O -0.55 -16.97 15.73 21.98 0.35 -16.63 16 6 C -0.11 -1.67 5.93 29.85 0.18 -1.49 16 7 C 0.13 3.65 4.96 86.38 0.43 4.08 16 8 N -0.72 -19.43 5.56 -463.05 -2.57 -22.01 16 9 C 0.51 20.42 7.58 87.66 0.66 21.09 16 10 O -0.56 -30.27 15.02 -3.04 -0.05 -30.32 16 11 C -0.11 -4.09 4.95 29.85 0.15 -3.94 16 12 C 0.07 3.58 1.23 -12.28 -0.02 3.57 16 13 H 0.00 0.12 6.59 -2.39 -0.02 0.10 16 14 C -0.56 -31.35 6.35 25.60 0.16 -31.18 16 15 H 0.04 2.28 7.82 -2.91 -0.02 2.26 16 16 C -0.03 -1.65 5.45 84.65 0.46 -1.19 16 17 N -0.95 -61.36 13.56 21.44 0.29 -61.06 16 18 Si 1.10 55.16 29.91 68.60 2.05 57.21 16 19 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 21 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 22 C -0.06 -2.50 4.53 -19.87 -0.09 -2.59 16 23 C -0.12 -4.69 8.90 22.27 0.20 -4.49 16 24 C -0.12 -4.00 10.05 22.27 0.22 -3.77 16 25 C -0.14 -4.39 10.05 22.27 0.22 -4.17 16 26 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 27 C -0.15 -6.45 9.18 22.27 0.20 -6.24 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.15 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.04 1.51 8.10 -2.39 -0.02 1.49 16 36 H 0.05 1.57 8.10 -2.39 -0.02 1.55 16 37 H 0.42 6.98 8.47 -92.71 -0.79 6.20 16 38 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.10 3.39 7.96 -2.39 -0.02 3.37 16 40 H 0.26 16.87 6.24 -92.70 -0.58 16.29 16 41 H 0.12 4.38 7.85 -2.91 -0.02 4.36 16 42 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 43 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 44 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.09 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -86.57 383.33 4.70 -81.87 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.39 Total: 20.86 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 4.76 Total: -22.96 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.28 Total: -83.07 kcal Atomic # 8 Polarization: -53.69 SS G_CDS: -0.23 Total: -53.92 kcal Atomic # 14 Polarization: 55.16 SS G_CDS: 2.05 Total: 57.21 kcal Total: -86.57 4.70 -81.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355171947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.791 kcal (2) G-P(sol) polarization free energy of solvation -86.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds