Wall clock time and date at job start Tue Mar 31 2020 12:39:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47090 * 2 1 4 4 C 1.35984 * 116.99815 * 179.97438 * 3 2 1 5 5 C 1.38717 * 120.06703 * 359.72626 * 4 3 2 6 6 C 1.37950 * 119.89953 * 180.35816 * 5 4 3 7 7 C 1.39128 * 120.28892 * 359.97438 * 6 5 4 8 8 C 1.38353 * 119.78893 * 359.82116 * 7 6 5 9 9 C 1.38499 * 119.87942 * 0.28623 * 8 7 6 10 10 C 1.50774 * 121.40533 * 180.56568 * 8 7 6 11 11 C 1.53061 * 109.70536 * 342.02702 * 10 8 7 12 12 H 1.08995 * 109.72898 * 288.47225 * 11 10 8 13 13 C 1.50699 * 109.69979 * 167.90100 * 11 10 8 14 14 O 1.21285 * 119.99598 * 1.14149 * 13 11 10 15 15 N 1.34770 * 120.00368 * 181.13988 * 13 11 10 16 16 C 1.46499 * 120.00072 * 179.97438 * 15 13 11 17 17 H 1.08998 * 109.47453 * 325.00346 * 16 15 13 18 18 C 1.53006 * 109.47057 * 84.99913 * 16 15 13 19 19 C 1.50696 * 109.47181 * 204.99880 * 16 15 13 20 20 H 1.08003 * 120.00533 * 0.02562 * 19 16 15 21 21 C 1.37878 * 120.00042 * 180.02562 * 19 16 15 22 22 N 1.31510 * 120.00142 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00020 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47302 * 89.99873 * 23 21 19 25 25 H 1.48507 * 109.47400 * 209.99651 * 23 21 19 26 26 H 1.48497 * 109.47255 * 330.00065 * 23 21 19 27 27 C 1.53413 * 108.31694 * 48.19216 * 11 10 8 28 28 O 1.35950 * 118.43210 * 179.57918 * 7 6 5 29 29 H 1.08997 * 109.46957 * 300.00107 * 1 2 3 30 30 H 1.09001 * 109.46897 * 59.99925 * 1 2 3 31 31 H 1.08998 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46957 * 239.99893 * 2 1 3 33 33 H 1.09001 * 109.46897 * 120.00075 * 2 1 3 34 34 H 1.07998 * 120.04914 * 0.36411 * 5 4 3 35 35 H 1.07997 * 119.85693 * 179.97438 * 6 5 4 36 36 H 1.07999 * 119.86426 * 179.76906 * 9 8 7 37 37 H 1.09008 * 109.43363 * 102.09595 * 10 8 7 38 38 H 1.08992 * 109.43524 * 221.95562 * 10 8 7 39 39 H 0.97002 * 120.00286 * 0.02562 * 15 13 11 40 40 H 1.08996 * 109.47242 * 179.97438 * 18 16 15 41 41 H 1.09000 * 109.47266 * 300.00605 * 18 16 15 42 42 H 1.09007 * 109.46906 * 59.99829 * 18 16 15 43 43 H 0.97005 * 120.00227 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.68358 * 175.59404 * 27 11 10 45 45 H 1.09003 * 109.68275 * 55.03564 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2008 0.4263 0.0068 6 6 5.5678 0.6110 0.0148 7 6 6.1023 1.8955 0.0161 8 6 5.2579 2.9914 0.0056 9 6 3.8855 2.8049 -0.0002 10 6 5.7977 4.3991 -0.0061 11 6 7.2618 4.3942 0.4402 12 1 7.3200 4.1858 1.5085 13 6 7.8860 5.7346 0.1496 14 8 7.2202 6.6189 -0.3463 15 7 9.1840 5.9509 0.4406 16 6 9.7909 7.2539 0.1575 17 1 9.3584 7.6658 -0.7543 18 6 9.5223 8.2060 1.3246 19 6 11.2777 7.0870 -0.0227 20 1 11.7259 6.1082 0.0645 21 6 12.0661 8.1839 -0.2988 22 7 11.5206 9.3757 -0.4056 23 14 13.9093 7.9771 -0.5214 24 1 14.2086 7.7129 -1.9518 25 1 14.6022 9.2184 -0.0918 26 1 14.3824 6.8357 0.3022 27 6 8.0003 3.2996 -0.3410 28 8 7.4547 2.0338 0.0329 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7900 -0.5725 0.0053 35 1 6.2260 -0.2452 0.0201 36 1 3.2265 3.6606 -0.0046 37 1 5.7275 4.8061 -1.0150 38 1 5.2131 5.0174 0.6750 39 1 9.7167 5.2436 0.8368 40 1 9.9742 9.1753 1.1142 41 1 8.4469 8.3267 1.4550 42 1 9.9548 7.7941 2.2365 43 1 12.0753 10.1475 -0.5995 44 1 9.0624 3.3280 -0.0976 45 1 7.8639 3.4567 -1.4109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358875806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:22 Heat of formation + Delta-G solvation = -101.987543 kcal Electronic energy + Delta-G solvation = -26277.709193 eV Core-core repulsion = 22453.222388 eV Total energy + Delta-G solvation = -3824.486805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01793 -39.69296 -38.67699 -36.62164 -35.00587 -33.99242 -32.47562 -32.14547 -30.89791 -29.31735 -28.73222 -25.71497 -25.30393 -24.73438 -23.38042 -22.68673 -21.29397 -20.11824 -19.34134 -18.06226 -17.84267 -17.38111 -16.65254 -16.35583 -15.87818 -15.33894 -15.10671 -14.85119 -14.66841 -14.27691 -14.01926 -13.70632 -13.54729 -13.40302 -13.22663 -13.09466 -12.87039 -12.75628 -12.52864 -12.40247 -11.87557 -11.69006 -11.52607 -11.14524 -11.09470 -11.01095 -10.96289 -10.78528 -10.61621 -10.37129 -10.34058 -10.26513 -9.13274 -9.08026 -8.95187 -8.58635 -7.99593 -7.82607 -6.15588 -4.25260 1.09609 1.33325 2.94594 3.16932 3.22663 3.28845 3.29667 3.31312 3.58586 3.93996 4.33056 4.55004 4.56510 4.57068 4.61620 4.75551 4.77913 4.87297 4.93913 5.03635 5.15808 5.16908 5.24153 5.37657 5.41873 5.51056 5.54362 5.64090 5.68887 5.79063 5.83426 5.96373 6.09963 6.17858 6.34273 6.42257 6.78589 6.92289 7.10781 7.15730 7.38294 7.41157 7.50334 7.64923 7.86470 8.10922 8.57724 8.72636 9.02281 9.42278 10.90302 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.002313 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.279102 B =12102.405611 C =12728.359637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.097 3.903 5 C -0.179 4.179 6 C -0.109 4.109 7 C 0.095 3.905 8 C -0.110 4.110 9 C -0.117 4.117 10 C -0.060 4.060 11 C -0.148 4.148 12 H 0.106 0.894 13 C 0.510 3.490 14 O -0.548 6.548 15 N -0.706 5.706 16 C 0.263 3.737 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.535 4.535 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.883 5.883 23 Si 0.902 3.098 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.073 3.927 28 O -0.312 6.312 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.389 0.611 40 H 0.091 0.909 41 H 0.015 0.985 42 H 0.026 0.974 43 H 0.265 0.735 44 H 0.116 0.884 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.903 -19.496 1.925 25.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.052 3.948 5 C -0.198 4.198 6 C -0.127 4.127 7 C 0.050 3.950 8 C -0.111 4.111 9 C -0.135 4.135 10 C -0.097 4.097 11 C -0.170 4.170 12 H 0.125 0.875 13 C 0.293 3.707 14 O -0.426 6.426 15 N -0.354 5.354 16 C 0.162 3.838 17 H 0.067 0.933 18 C -0.206 4.206 19 C -0.573 4.573 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.730 3.270 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.198 1.198 27 C -0.002 4.002 28 O -0.226 6.226 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.222 0.778 40 H 0.109 0.891 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.311 -18.620 1.579 24.804 hybrid contribution 1.312 -0.416 0.113 1.381 sum -14.999 -19.036 1.693 24.294 Atomic orbital electron populations 1.21773 0.92844 1.02748 1.03570 1.22742 0.95800 0.82247 1.01252 1.86074 1.18934 1.28923 1.89279 1.18741 0.82278 0.93882 0.99850 1.20963 0.93205 0.98115 1.07507 1.20341 0.94357 0.95095 1.02939 1.18612 0.82793 0.93117 1.00483 1.19739 0.92810 0.95151 1.03391 1.20129 0.93753 0.95164 1.04476 1.20320 0.93520 0.91631 1.04254 1.22038 0.96875 0.95251 1.02852 0.87550 1.19977 0.83100 0.88306 0.79280 1.90671 1.61856 1.45555 1.44567 1.46581 1.09457 1.17802 1.61553 1.18778 0.92233 0.77719 0.95070 0.93284 1.22082 0.97134 1.03446 0.97947 1.21199 0.91343 0.94436 1.50329 0.92029 1.24894 0.99083 0.95012 0.94747 1.69900 1.35727 0.98825 1.47548 0.86438 0.84463 0.77664 0.78467 1.20550 1.21070 1.19830 1.22967 0.98120 0.80108 0.99033 1.86026 1.17616 1.35019 1.83966 0.91519 0.91508 0.90471 0.92167 0.92163 0.85118 0.84945 0.84811 0.88760 0.89167 0.77845 0.89089 0.96638 0.95434 0.92534 0.86639 0.91021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.28 37.16 0.38 -0.45 16 2 C 0.05 0.39 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.43 10.14 -19.69 -0.20 -3.63 16 4 C 0.10 1.13 6.68 -39.29 -0.26 0.86 16 5 C -0.18 -1.84 9.03 -39.51 -0.36 -2.19 16 6 C -0.11 -1.22 9.93 -39.36 -0.39 -1.61 16 7 C 0.09 1.24 6.47 -39.21 -0.25 0.99 16 8 C -0.11 -1.44 5.75 -104.45 -0.60 -2.04 16 9 C -0.12 -1.44 9.60 -39.38 -0.38 -1.82 16 10 C -0.06 -0.84 4.65 -27.82 -0.13 -0.97 16 11 C -0.15 -2.13 2.76 -91.53 -0.25 -2.38 16 12 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 13 C 0.51 9.66 7.13 -10.99 -0.08 9.58 16 14 O -0.55 -12.55 15.46 5.55 0.09 -12.47 16 15 N -0.71 -14.04 4.95 -54.93 -0.27 -14.31 16 16 C 0.26 6.54 2.56 -69.08 -0.18 6.37 16 17 H 0.05 1.41 7.58 -51.93 -0.39 1.02 16 18 C -0.15 -3.62 9.26 37.16 0.34 -3.28 16 19 C -0.53 -13.84 8.73 -34.44 -0.30 -14.14 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 21 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -24.57 11.32 55.43 0.63 -23.94 16 23 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 27 C 0.07 0.96 6.25 37.37 0.23 1.19 16 28 O -0.31 -4.19 10.27 -19.58 -0.20 -4.39 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 33 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 34 H 0.13 0.99 6.31 -52.49 -0.33 0.66 16 35 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.09 1.41 7.71 -51.92 -0.40 1.01 16 38 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.39 6.62 7.94 -40.82 -0.32 6.29 16 40 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.12 1.35 7.50 -51.93 -0.39 0.96 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -30.87 368.57 -8.26 -39.13 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -6.72 Total: 6.35 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.11 Total: -7.64 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.36 Total: -38.25 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.31 Total: -20.48 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.87 -8.26 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358875806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.858 kcal (2) G-P(sol) polarization free energy of solvation -30.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds