Wall clock time and date at job start Tue Mar 31 2020 12:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42896 * 109.47090 * 2 1 4 4 C 1.35984 * 116.99815 * 179.97438 * 3 2 1 5 5 C 1.38717 * 120.06703 * 359.72626 * 4 3 2 6 6 C 1.37950 * 119.89953 * 180.35816 * 5 4 3 7 7 C 1.39128 * 120.28892 * 359.97438 * 6 5 4 8 8 C 1.38353 * 119.78893 * 359.82116 * 7 6 5 9 9 C 1.38499 * 119.87942 * 0.28623 * 8 7 6 10 10 C 1.50774 * 121.40533 * 180.56568 * 8 7 6 11 11 C 1.53061 * 109.70536 * 342.02702 * 10 8 7 12 12 H 1.08995 * 109.72898 * 288.47225 * 11 10 8 13 13 C 1.50699 * 109.69979 * 167.90100 * 11 10 8 14 14 O 1.21285 * 119.99598 * 1.14149 * 13 11 10 15 15 N 1.34770 * 120.00368 * 181.13988 * 13 11 10 16 16 C 1.46499 * 120.00072 * 179.97438 * 15 13 11 17 17 H 1.08998 * 109.47453 * 325.00346 * 16 15 13 18 18 C 1.53006 * 109.47057 * 84.99913 * 16 15 13 19 19 C 1.50696 * 109.47181 * 204.99880 * 16 15 13 20 20 H 1.08003 * 120.00533 * 0.02562 * 19 16 15 21 21 C 1.37878 * 120.00042 * 180.02562 * 19 16 15 22 22 N 1.31510 * 120.00142 * 359.97438 * 21 19 16 23 23 Si 1.86798 * 120.00020 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47302 * 89.99873 * 23 21 19 25 25 H 1.48507 * 109.47400 * 209.99651 * 23 21 19 26 26 H 1.48497 * 109.47255 * 330.00065 * 23 21 19 27 27 C 1.53413 * 108.31694 * 48.19216 * 11 10 8 28 28 O 1.35950 * 118.43210 * 179.57918 * 7 6 5 29 29 H 1.08997 * 109.46957 * 300.00107 * 1 2 3 30 30 H 1.09001 * 109.46897 * 59.99925 * 1 2 3 31 31 H 1.08998 * 109.47378 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46957 * 239.99893 * 2 1 3 33 33 H 1.09001 * 109.46897 * 120.00075 * 2 1 3 34 34 H 1.07998 * 120.04914 * 0.36411 * 5 4 3 35 35 H 1.07997 * 119.85693 * 179.97438 * 6 5 4 36 36 H 1.07999 * 119.86426 * 179.76906 * 9 8 7 37 37 H 1.09008 * 109.43363 * 102.09595 * 10 8 7 38 38 H 1.08992 * 109.43524 * 221.95562 * 10 8 7 39 39 H 0.97002 * 120.00286 * 0.02562 * 15 13 11 40 40 H 1.08996 * 109.47242 * 179.97438 * 18 16 15 41 41 H 1.09000 * 109.47266 * 300.00605 * 18 16 15 42 42 H 1.09007 * 109.46906 * 59.99829 * 18 16 15 43 43 H 0.97005 * 120.00227 * 179.97438 * 22 21 19 44 44 H 1.09002 * 109.68358 * 175.59404 * 27 11 10 45 45 H 1.09003 * 109.68275 * 55.03564 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.2008 0.4263 0.0068 6 6 5.5678 0.6110 0.0148 7 6 6.1023 1.8955 0.0161 8 6 5.2579 2.9914 0.0056 9 6 3.8855 2.8049 -0.0002 10 6 5.7977 4.3991 -0.0061 11 6 7.2618 4.3942 0.4402 12 1 7.3200 4.1858 1.5085 13 6 7.8860 5.7346 0.1496 14 8 7.2202 6.6189 -0.3463 15 7 9.1840 5.9509 0.4406 16 6 9.7909 7.2539 0.1575 17 1 9.3584 7.6658 -0.7543 18 6 9.5223 8.2060 1.3246 19 6 11.2777 7.0870 -0.0227 20 1 11.7259 6.1082 0.0645 21 6 12.0661 8.1839 -0.2988 22 7 11.5206 9.3757 -0.4056 23 14 13.9093 7.9771 -0.5214 24 1 14.2086 7.7129 -1.9518 25 1 14.6022 9.2184 -0.0918 26 1 14.3824 6.8357 0.3022 27 6 8.0003 3.2996 -0.3410 28 8 7.4547 2.0338 0.0329 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7900 -0.5725 0.0053 35 1 6.2260 -0.2452 0.0201 36 1 3.2265 3.6606 -0.0046 37 1 5.7275 4.8061 -1.0150 38 1 5.2131 5.0174 0.6750 39 1 9.7167 5.2436 0.8368 40 1 9.9742 9.1753 1.1142 41 1 8.4469 8.3267 1.4550 42 1 9.9548 7.7941 2.2365 43 1 12.0753 10.1475 -0.5995 44 1 9.0624 3.3280 -0.0976 45 1 7.8639 3.4567 -1.4109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358875806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:21 Heat of formation + Delta-G solvation = -120.958875 kcal Electronic energy + Delta-G solvation = -26278.531852 eV Core-core repulsion = 22453.222388 eV Total energy + Delta-G solvation = -3825.309464 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.04541 -40.78151 -39.96670 -37.50715 -36.82669 -35.20646 -34.33631 -32.71875 -32.08359 -30.49847 -30.14655 -27.34614 -26.73800 -25.79311 -24.23176 -23.63521 -22.76917 -21.46621 -20.77955 -19.14177 -18.85555 -18.69518 -17.73328 -17.56017 -17.06170 -16.98670 -16.30661 -16.13194 -15.89321 -15.43926 -15.26785 -14.94691 -14.63493 -14.42223 -14.33554 -14.20578 -14.06809 -13.82659 -13.70116 -13.51223 -13.20604 -12.97272 -12.89068 -12.77389 -12.53993 -12.32902 -12.26504 -12.12908 -11.99410 -11.93439 -11.58427 -11.22424 -11.10963 -10.75801 -10.57589 -9.89009 -9.78936 -8.73412 -8.17156 -6.34453 0.20233 0.41908 1.46310 1.46430 1.57113 1.67496 2.13373 2.33760 2.34844 2.54869 2.69694 3.13587 3.44468 3.55403 3.69421 3.79004 3.92075 3.98649 4.10466 4.16510 4.18339 4.33365 4.41325 4.42451 4.50385 4.62897 4.72903 4.76284 4.85985 4.91366 4.92393 4.97569 4.98802 5.02302 5.09419 5.22127 5.33991 5.37927 5.43121 5.55021 5.59614 5.67690 5.88569 6.09449 6.29810 6.53055 6.72923 6.89660 7.31581 7.49189 8.89070 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.002313 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.279102 B =12102.405611 C =12728.359637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.334 6.334 4 C 0.094 3.906 5 C -0.170 4.170 6 C -0.106 4.106 7 C 0.073 3.927 8 C -0.118 4.118 9 C -0.132 4.132 10 C -0.056 4.056 11 C -0.133 4.133 12 H 0.126 0.874 13 C 0.511 3.489 14 O -0.591 6.591 15 N -0.700 5.700 16 C 0.269 3.731 17 H 0.000 1.000 18 C -0.135 4.135 19 C -0.545 4.545 20 H 0.076 0.924 21 C 0.013 3.987 22 N -0.918 5.918 23 Si 0.972 3.028 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.259 1.259 27 C 0.077 3.923 28 O -0.312 6.312 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.406 0.594 40 H 0.066 0.934 41 H 0.012 0.988 42 H 0.041 0.959 43 H 0.265 0.735 44 H 0.133 0.867 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.571 -22.809 2.612 27.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.049 3.951 5 C -0.189 4.189 6 C -0.125 4.125 7 C 0.029 3.971 8 C -0.119 4.119 9 C -0.151 4.151 10 C -0.094 4.094 11 C -0.154 4.154 12 H 0.144 0.856 13 C 0.297 3.703 14 O -0.473 6.473 15 N -0.349 5.349 16 C 0.166 3.834 17 H 0.018 0.982 18 C -0.194 4.194 19 C -0.583 4.583 20 H 0.095 0.905 21 C -0.187 4.187 22 N -0.556 5.556 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.183 1.183 27 C 0.002 3.998 28 O -0.226 6.226 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.242 0.758 40 H 0.085 0.915 41 H 0.031 0.969 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.150 0.850 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.990 -21.988 2.285 27.283 hybrid contribution 1.046 0.562 -0.120 1.194 sum -14.943 -21.426 2.165 26.212 Atomic orbital electron populations 1.21811 0.91802 1.04143 1.03006 1.23079 0.96724 0.80761 1.02485 1.86073 1.18423 1.31381 1.89077 1.18863 0.83027 0.93903 0.99262 1.21291 0.92661 0.99155 1.05752 1.20646 0.95088 0.94929 1.01794 1.18872 0.82611 0.93898 1.01751 1.19606 0.93242 0.94416 1.04684 1.20214 0.93605 0.96032 1.05235 1.20220 0.93375 0.92629 1.03155 1.21925 0.96764 0.92539 1.04203 0.85649 1.20685 0.82345 0.89528 0.77735 1.90654 1.62774 1.47559 1.46276 1.46297 1.10083 1.16690 1.61840 1.18375 0.92160 0.79757 0.93098 0.98167 1.21913 0.96721 1.02353 0.98418 1.21540 0.91711 0.95100 1.49918 0.90543 1.25806 1.03798 0.94682 0.94420 1.70053 1.37406 0.99664 1.48472 0.85341 0.78715 0.77850 0.78400 1.20419 1.21183 1.18271 1.22954 0.98741 0.79687 0.98462 1.86028 1.17910 1.34512 1.84184 0.92061 0.92121 0.88074 0.90897 0.90797 0.82009 0.82827 0.84898 0.90541 0.89463 0.75799 0.91497 0.96906 0.94012 0.92600 0.84964 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 71.98 0.74 -0.59 16 2 C 0.04 0.52 5.46 71.98 0.39 0.91 16 3 O -0.33 -6.73 10.14 -93.37 -0.95 -7.67 16 4 C 0.09 2.04 6.68 22.46 0.15 2.19 16 5 C -0.17 -3.00 9.03 22.32 0.20 -2.80 16 6 C -0.11 -2.10 9.93 22.42 0.22 -1.88 16 7 C 0.07 1.80 6.47 22.51 0.15 1.95 16 8 C -0.12 -3.06 5.75 -19.75 -0.11 -3.18 16 9 C -0.13 -3.23 9.60 22.40 0.22 -3.02 16 10 C -0.06 -1.60 4.65 29.89 0.14 -1.47 16 11 C -0.13 -3.75 2.76 -11.38 -0.03 -3.78 16 12 H 0.13 3.11 8.14 -2.39 -0.02 3.09 16 13 C 0.51 19.61 7.13 87.66 0.62 20.23 16 14 O -0.59 -28.23 15.46 -3.04 -0.05 -28.27 16 15 N -0.70 -27.77 4.95 -446.10 -2.21 -29.98 16 16 C 0.27 13.67 2.56 44.25 0.11 13.79 16 17 H 0.00 0.03 7.58 -2.39 -0.02 0.01 16 18 C -0.14 -6.78 9.26 71.98 0.67 -6.12 16 19 C -0.54 -28.07 8.73 25.60 0.22 -27.84 16 20 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 21 C 0.01 0.69 5.30 84.66 0.45 1.14 16 22 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 23 Si 0.97 41.39 29.54 68.60 2.03 43.41 16 24 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.29 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 C 0.08 1.92 6.25 72.12 0.45 2.37 16 28 O -0.31 -7.78 10.27 -92.98 -0.96 -8.74 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.67 7.67 -2.39 -0.02 0.66 16 33 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 34 H 0.16 1.77 6.31 -2.91 -0.02 1.76 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.13 3.13 8.06 -2.91 -0.02 3.10 16 37 H 0.08 2.42 7.71 -2.38 -0.02 2.40 16 38 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.41 13.24 7.94 -92.71 -0.74 12.51 16 40 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 41 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 42 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 43 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 44 H 0.13 2.82 7.50 -2.39 -0.02 2.80 16 45 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -68.05 368.57 2.97 -65.08 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.27 Total: 26.20 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 4.59 Total: -8.09 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.96 Total: -81.91 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -1.95 Total: -44.68 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.41 kcal Total: -68.05 2.97 -65.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358875806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.883 kcal (2) G-P(sol) polarization free energy of solvation -68.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds