Wall clock time and date at job start Tue Mar 31 2020 12:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42891 * 109.46827 * 2 1 4 4 C 1.35987 * 117.00024 * 179.97438 * 3 2 1 5 5 C 1.38721 * 120.06409 * 0.02562 * 4 3 2 6 6 C 1.37952 * 119.89763 * 179.89435 * 5 4 3 7 7 C 1.39129 * 120.29474 * 0.02562 * 6 5 4 8 8 C 1.38360 * 119.78192 * 0.14180 * 7 6 5 9 9 C 1.38502 * 119.88162 * 359.78973 * 8 7 6 10 10 C 1.50774 * 121.40752 * 179.52728 * 8 7 6 11 11 C 1.53133 * 109.71738 * 17.86097 * 10 8 7 12 12 H 1.09002 * 109.68042 * 71.46803 * 11 10 8 13 13 C 1.50705 * 109.76005 * 192.08629 * 11 10 8 14 14 O 1.21284 * 119.99506 * 358.83227 * 13 11 10 15 15 N 1.34769 * 120.00218 * 178.82758 * 13 11 10 16 16 C 1.46500 * 119.99916 * 180.02562 * 15 13 11 17 17 H 1.08998 * 109.47122 * 325.00427 * 16 15 13 18 18 C 1.53001 * 109.47218 * 85.00313 * 16 15 13 19 19 C 1.50698 * 109.47116 * 205.00259 * 16 15 13 20 20 H 1.08001 * 120.00367 * 359.97438 * 19 16 15 21 21 C 1.37881 * 119.99774 * 180.02562 * 19 16 15 22 22 N 1.31509 * 120.00376 * 359.97438 * 21 19 16 23 23 Si 1.86803 * 119.99747 * 180.02562 * 21 19 16 24 24 H 1.48492 * 109.47496 * 89.99778 * 23 21 19 25 25 H 1.48501 * 109.46761 * 209.99816 * 23 21 19 26 26 H 1.48497 * 109.47132 * 329.99695 * 23 21 19 27 27 C 1.53412 * 108.26138 * 311.80125 * 11 10 8 28 28 O 1.35947 * 118.44091 * 180.21098 * 7 6 5 29 29 H 1.08994 * 109.47109 * 299.99499 * 1 2 3 30 30 H 1.09005 * 109.46979 * 60.00480 * 1 2 3 31 31 H 1.09005 * 109.46708 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47082 * 239.99980 * 2 1 3 33 33 H 1.09000 * 109.46632 * 120.00376 * 2 1 3 34 34 H 1.07997 * 120.05315 * 359.92039 * 5 4 3 35 35 H 1.08000 * 119.85112 * 180.02562 * 6 5 4 36 36 H 1.07997 * 119.85947 * 180.13455 * 9 8 7 37 37 H 1.08994 * 109.43699 * 137.93401 * 10 8 7 38 38 H 1.09001 * 109.43222 * 257.84753 * 10 8 7 39 39 H 0.96995 * 120.00153 * 0.02562 * 15 13 11 40 40 H 1.09005 * 109.47103 * 300.00180 * 18 16 15 41 41 H 1.09005 * 109.46918 * 59.99687 * 18 16 15 42 42 H 1.08996 * 109.47372 * 180.02562 * 18 16 15 43 43 H 0.96995 * 120.00547 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.68409 * 304.95597 * 27 11 10 45 45 H 1.08999 * 109.68633 * 184.43574 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3544 1.5255 0.0005 5 6 4.2008 0.4263 0.0005 6 6 5.5678 0.6111 -0.0011 7 6 6.1024 1.8956 -0.0022 8 6 5.2578 2.9915 0.0013 9 6 3.8854 2.8050 0.0015 10 6 5.7974 4.3994 0.0108 11 6 7.2649 4.3932 -0.4268 12 1 7.3288 4.1797 -1.4938 13 6 7.8882 5.7346 -0.1383 14 8 7.2200 6.6214 0.3495 15 7 9.1882 5.9486 -0.4222 16 6 9.7943 7.2524 -0.1412 17 1 9.0597 8.0392 -0.3130 18 6 10.2570 7.2963 1.3165 19 6 10.9776 7.4628 -1.0503 20 1 11.2511 6.7012 -1.7656 21 6 11.7116 8.6270 -0.9682 22 7 11.3789 9.5542 -0.0969 23 14 13.1780 8.8880 -2.0957 24 1 12.7293 9.5522 -3.3457 25 1 14.1811 9.7441 -1.4129 26 1 13.7894 7.5753 -2.4246 27 6 7.9977 3.3016 0.3638 28 8 7.4548 2.0341 -0.0083 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.7901 -0.5725 0.0014 35 1 6.2260 -0.2451 -0.0016 36 1 3.2265 3.6606 0.0020 37 1 5.2169 5.0150 -0.6762 38 1 5.7220 4.8098 1.0178 39 1 9.7225 5.2395 -0.8126 40 1 9.4010 7.1441 1.9741 41 1 10.9915 6.5095 1.4883 42 1 10.7075 8.2665 1.5257 43 1 11.8951 10.3734 -0.0394 44 1 7.8543 3.4632 1.4322 45 1 9.0615 3.3289 0.1279 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358875808.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:26 Heat of formation + Delta-G solvation = -120.984431 kcal Electronic energy + Delta-G solvation = -26281.422813 eV Core-core repulsion = 22456.112241 eV Total energy + Delta-G solvation = -3825.310572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04364 -40.78156 -39.96614 -37.50656 -36.82655 -35.20507 -34.33996 -32.71863 -32.07704 -30.50374 -30.15062 -27.34703 -26.73865 -25.78195 -24.22588 -23.63194 -22.77681 -21.49264 -20.76396 -19.12755 -18.83424 -18.71838 -17.73644 -17.57575 -17.06499 -16.98172 -16.31525 -16.11790 -15.91229 -15.48274 -15.26949 -14.76953 -14.64209 -14.46297 -14.35217 -14.29448 -14.08593 -13.82960 -13.62736 -13.53164 -13.20442 -12.99811 -12.87945 -12.75055 -12.54735 -12.32624 -12.26231 -12.14373 -11.99253 -11.93254 -11.58316 -11.22415 -11.10989 -10.75902 -10.58079 -9.88721 -9.79166 -8.73317 -8.17599 -6.34959 0.20209 0.41968 1.45650 1.45920 1.56574 1.67509 2.13096 2.33652 2.34754 2.54613 2.69686 3.13008 3.44192 3.55457 3.69208 3.79073 3.92069 3.98651 4.10446 4.16401 4.18293 4.33449 4.41312 4.42394 4.49847 4.62971 4.72884 4.77419 4.86111 4.91411 4.92892 4.97529 4.98760 5.02121 5.09576 5.22102 5.33995 5.37995 5.43497 5.55044 5.59283 5.68005 5.89088 6.09769 6.29868 6.53091 6.72474 6.89567 7.31200 7.49008 8.88538 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.034069 B = 0.002271 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.657590 B =12328.163851 C =12663.754945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.094 3.906 5 C -0.170 4.170 6 C -0.106 4.106 7 C 0.074 3.926 8 C -0.119 4.119 9 C -0.132 4.132 10 C -0.056 4.056 11 C -0.134 4.134 12 H 0.123 0.877 13 C 0.511 3.489 14 O -0.591 6.591 15 N -0.700 5.700 16 C 0.269 3.731 17 H -0.001 1.001 18 C -0.134 4.134 19 C -0.546 4.546 20 H 0.075 0.925 21 C 0.014 3.986 22 N -0.917 5.917 23 Si 0.972 3.028 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.259 1.259 27 C 0.078 3.922 28 O -0.312 6.312 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.406 0.594 40 H 0.013 0.987 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.265 0.735 44 H 0.068 0.932 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.975 -23.527 -0.513 27.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.250 6.250 4 C 0.049 3.951 5 C -0.189 4.189 6 C -0.124 4.124 7 C 0.029 3.971 8 C -0.120 4.120 9 C -0.151 4.151 10 C -0.094 4.094 11 C -0.155 4.155 12 H 0.141 0.859 13 C 0.297 3.703 14 O -0.473 6.473 15 N -0.349 5.349 16 C 0.166 3.834 17 H 0.017 0.983 18 C -0.193 4.193 19 C -0.584 4.584 20 H 0.093 0.907 21 C -0.186 4.186 22 N -0.555 5.555 23 Si 0.797 3.203 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.183 1.183 27 C 0.002 3.998 28 O -0.226 6.226 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.242 0.758 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.383 -22.716 -0.150 27.435 hybrid contribution 0.877 0.757 -0.463 1.248 sum -14.506 -21.959 -0.612 26.325 Atomic orbital electron populations 1.21813 0.91812 1.04144 1.03000 1.23079 0.96718 0.80759 1.02489 1.86073 1.18436 1.31385 1.89079 1.18863 0.83027 0.93902 0.99271 1.21294 0.92672 0.99144 1.05745 1.20646 0.95071 0.94933 1.01785 1.18866 0.82607 0.93880 1.01730 1.19605 0.93242 0.94413 1.04704 1.20213 0.93620 0.96029 1.05254 1.20230 0.93324 0.92626 1.03196 1.21938 0.96817 0.92617 1.04149 0.85872 1.20678 0.82279 0.89580 0.77732 1.90654 1.62880 1.47235 1.46498 1.46294 1.10037 1.16520 1.62058 1.18375 0.91722 0.80125 0.93188 0.98339 1.21899 0.98170 1.02263 0.96949 1.21544 1.12736 1.04087 1.20045 0.90718 1.25798 1.00535 0.95375 0.96941 1.70046 1.41154 1.08184 1.36139 0.85347 0.78269 0.78557 0.78172 1.20525 1.21050 1.18288 1.22954 0.98805 0.79584 0.98422 1.86023 1.17890 1.34341 1.84372 0.92109 0.92085 0.88068 0.90817 0.90863 0.82004 0.82791 0.84946 0.89622 0.90423 0.75808 0.96806 0.93768 0.91576 0.92573 0.91375 0.84922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 71.98 0.74 -0.60 16 2 C 0.04 0.52 5.46 71.98 0.39 0.91 16 3 O -0.33 -6.74 10.14 -93.41 -0.95 -7.69 16 4 C 0.09 2.04 6.68 22.46 0.15 2.19 16 5 C -0.17 -2.98 9.03 22.32 0.20 -2.78 16 6 C -0.11 -2.07 9.93 22.42 0.22 -1.85 16 7 C 0.07 1.80 6.47 22.51 0.15 1.95 16 8 C -0.12 -3.06 5.75 -19.75 -0.11 -3.18 16 9 C -0.13 -3.24 9.60 22.40 0.22 -3.03 16 10 C -0.06 -1.60 4.66 29.92 0.14 -1.47 16 11 C -0.13 -3.78 2.76 -11.36 -0.03 -3.81 16 12 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 13 C 0.51 19.64 7.13 87.66 0.62 20.26 16 14 O -0.59 -28.25 15.47 -3.04 -0.05 -28.30 16 15 N -0.70 -27.80 4.95 -446.10 -2.21 -30.01 16 16 C 0.27 13.67 2.56 44.25 0.11 13.79 16 17 H 0.00 -0.08 7.58 -2.39 -0.02 -0.10 16 18 C -0.13 -6.64 9.26 71.98 0.67 -5.98 16 19 C -0.55 -28.33 8.73 25.60 0.22 -28.10 16 20 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 21 C 0.01 0.72 5.30 84.66 0.45 1.17 16 22 N -0.92 -52.18 11.32 21.45 0.24 -51.93 16 23 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 27 C 0.08 1.89 6.25 72.12 0.45 2.34 16 28 O -0.31 -7.66 10.27 -92.95 -0.95 -8.62 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.07 0.67 7.67 -2.39 -0.02 0.65 16 33 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 34 H 0.16 1.76 6.31 -2.91 -0.02 1.74 16 35 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 37 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.08 2.43 7.71 -2.39 -0.02 2.41 16 39 H 0.41 13.26 7.94 -92.71 -0.74 12.53 16 40 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.07 3.62 6.07 -2.39 -0.01 3.61 16 43 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 44 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.13 2.71 7.50 -2.39 -0.02 2.69 16 Total: -1.00 -68.26 368.59 2.97 -65.29 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.27 Total: 25.84 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 4.59 Total: -8.18 kcal Atomic # 7 Polarization: -79.98 SS G_CDS: -1.96 Total: -81.94 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.95 Total: -44.60 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -68.26 2.97 -65.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358875808.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.690 kcal (2) G-P(sol) polarization free energy of solvation -68.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds