Wall clock time and date at job start Tue Mar 31 2020 12:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42898 * 109.47141 * 2 1 4 4 C 1.35982 * 116.99957 * 180.02562 * 3 2 1 5 5 C 1.38722 * 120.07049 * 359.72509 * 4 3 2 6 6 C 1.37945 * 119.90376 * 180.33724 * 5 4 3 7 7 C 1.39133 * 120.29133 * 0.05403 * 6 5 4 8 8 C 1.38346 * 119.78263 * 359.82891 * 7 6 5 9 9 C 1.38505 * 119.88488 * 0.17281 * 8 7 6 10 10 C 1.50784 * 121.40919 * 180.33339 * 8 7 6 11 11 C 1.53067 * 109.68856 * 342.17057 * 10 8 7 12 12 H 1.08994 * 109.70092 * 288.52119 * 11 10 8 13 13 C 1.50707 * 109.69547 * 167.92527 * 11 10 8 14 14 O 1.21280 * 120.00224 * 359.97438 * 13 11 10 15 15 N 1.34778 * 119.99909 * 180.02562 * 13 11 10 16 16 C 1.46500 * 119.99913 * 179.97438 * 15 13 11 17 17 H 1.08994 * 109.47060 * 34.99476 * 16 15 13 18 18 C 1.53002 * 109.46670 * 274.99825 * 16 15 13 19 19 C 1.50701 * 109.47124 * 154.99971 * 16 15 13 20 20 H 1.08001 * 119.99752 * 35.00284 * 19 16 15 21 21 C 1.37874 * 119.99663 * 215.00067 * 19 16 15 22 22 N 1.31521 * 119.99772 * 184.91405 * 21 19 16 23 23 Si 1.86797 * 120.00301 * 4.91621 * 21 19 16 24 24 H 1.48499 * 109.47188 * 84.82950 * 23 21 19 25 25 H 1.48497 * 109.47195 * 204.83387 * 23 21 19 26 26 H 1.48503 * 109.46953 * 324.82793 * 23 21 19 27 27 C 1.53407 * 108.29817 * 48.22759 * 11 10 8 28 28 O 1.35946 * 118.43090 * 179.67953 * 7 6 5 29 29 H 1.08998 * 109.47360 * 59.99349 * 1 2 3 30 30 H 1.09005 * 109.47520 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46905 * 299.99877 * 1 2 3 32 32 H 1.09009 * 109.46750 * 240.00406 * 2 1 3 33 33 H 1.08998 * 109.47360 * 120.00651 * 2 1 3 34 34 H 1.08001 * 120.04669 * 0.36703 * 5 4 3 35 35 H 1.07998 * 119.85249 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.86182 * 179.97438 * 9 8 7 37 37 H 1.08995 * 109.43585 * 102.23940 * 10 8 7 38 38 H 1.08999 * 109.43198 * 222.10983 * 10 8 7 39 39 H 0.96999 * 119.99703 * 359.97438 * 15 13 11 40 40 H 1.09004 * 109.47041 * 175.03579 * 18 16 15 41 41 H 1.09005 * 109.47395 * 295.03047 * 18 16 15 42 42 H 1.08996 * 109.47646 * 55.03519 * 18 16 15 43 43 H 0.96999 * 119.99736 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.68706 * 54.98211 * 27 11 10 45 45 H 1.08993 * 109.68635 * 175.54529 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3544 1.5254 -0.0005 5 6 4.2008 0.4263 0.0047 6 6 5.5678 0.6110 0.0112 7 6 6.1023 1.8956 0.0136 8 6 5.2578 2.9913 0.0059 9 6 3.8854 2.8049 -0.0005 10 6 5.7975 4.3993 0.0007 11 6 7.2618 4.3920 0.4463 12 1 7.3202 4.1774 1.5133 13 6 7.8859 5.7341 0.1624 14 8 7.2255 6.6142 -0.3478 15 7 9.1781 5.9560 0.4746 16 6 9.7848 7.2605 0.1981 17 1 9.0431 8.0451 0.3472 18 6 10.2807 7.2958 -1.2489 19 6 10.9460 7.4826 1.1326 20 1 11.5643 6.6496 1.4331 21 6 11.2190 8.7492 1.6039 22 7 12.2877 8.9604 2.3409 23 14 10.0712 10.1652 1.1958 24 1 8.9530 10.1933 2.1726 25 1 10.8205 11.4454 1.2643 26 1 9.5274 9.9826 -0.1739 27 6 7.9995 3.3018 -0.3415 28 8 7.4547 2.0338 0.0267 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.7900 -0.5725 0.0032 35 1 6.2259 -0.2452 0.0148 36 1 3.2265 3.6606 -0.0061 37 1 5.7267 4.8111 -1.0059 38 1 5.2132 5.0141 0.6854 39 1 9.7063 5.2520 0.8823 40 1 10.6519 8.2939 -1.4815 41 1 11.0847 6.5706 -1.3753 42 1 9.4590 7.0480 -1.9208 43 1 12.4800 9.8515 2.6721 44 1 7.8616 3.4642 -1.4105 45 1 9.0619 3.3291 -0.0995 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358875809.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:29 Heat of formation + Delta-G solvation = -102.159178 kcal Electronic energy + Delta-G solvation = -26368.738695 eV Core-core repulsion = 22544.244448 eV Total energy + Delta-G solvation = -3824.494248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06453 -39.74847 -38.79192 -36.65766 -35.11702 -34.05872 -32.44719 -32.16837 -31.09271 -29.49061 -29.29565 -25.79953 -25.35073 -24.78850 -23.41333 -22.71865 -21.22970 -20.12461 -19.49413 -18.11217 -17.88419 -17.54545 -16.78057 -16.39079 -16.16974 -15.45416 -15.25607 -14.87239 -14.73812 -14.30654 -13.93763 -13.72013 -13.56433 -13.37862 -13.26491 -13.12089 -13.11514 -12.82564 -12.56945 -12.53377 -12.37479 -11.83958 -11.56272 -11.51280 -11.19560 -11.07982 -11.05342 -10.85453 -10.68756 -10.61188 -10.40833 -9.91655 -9.26127 -9.24242 -8.98808 -8.74179 -8.18709 -7.85837 -6.27179 -4.31366 1.06456 1.30244 2.91905 3.06568 3.21504 3.24441 3.31614 3.38238 3.54676 3.83283 4.28997 4.51563 4.51820 4.54707 4.56661 4.71821 4.73315 4.84303 4.90240 4.96307 5.10625 5.12778 5.21301 5.32922 5.40116 5.44994 5.47749 5.62146 5.62747 5.75971 5.80233 5.91651 6.04433 6.14686 6.28362 6.30403 6.38947 6.46446 6.62528 6.87762 7.11992 7.13170 7.30973 7.37744 7.48297 8.06354 8.48705 8.72344 8.85754 9.34385 10.84398 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028380 B = 0.002467 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.358620 B =11345.166931 C =11871.026710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.098 3.902 5 C -0.179 4.179 6 C -0.108 4.108 7 C 0.095 3.905 8 C -0.110 4.110 9 C -0.117 4.117 10 C -0.060 4.060 11 C -0.149 4.149 12 H 0.109 0.891 13 C 0.510 3.490 14 O -0.552 6.552 15 N -0.701 5.701 16 C 0.230 3.770 17 H 0.051 0.949 18 C -0.147 4.147 19 C -0.531 4.531 20 H 0.079 0.921 21 C 0.081 3.919 22 N -0.887 5.887 23 Si 0.875 3.125 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.261 1.261 27 C 0.074 3.926 28 O -0.311 6.311 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.394 0.606 40 H 0.052 0.948 41 H 0.047 0.953 42 H 0.029 0.971 43 H 0.268 0.732 44 H 0.070 0.930 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 -19.286 -4.909 26.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.053 3.947 5 C -0.197 4.197 6 C -0.127 4.127 7 C 0.050 3.950 8 C -0.111 4.111 9 C -0.135 4.135 10 C -0.097 4.097 11 C -0.171 4.171 12 H 0.127 0.873 13 C 0.294 3.706 14 O -0.431 6.431 15 N -0.349 5.349 16 C 0.128 3.872 17 H 0.068 0.932 18 C -0.206 4.206 19 C -0.569 4.569 20 H 0.097 0.903 21 C -0.124 4.124 22 N -0.523 5.523 23 Si 0.701 3.299 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.185 1.185 27 C -0.001 4.001 28 O -0.225 6.225 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.227 0.773 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.048 0.952 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.198 -18.479 -5.118 26.435 hybrid contribution -0.173 0.439 0.145 0.494 sum -18.372 -18.039 -4.973 26.223 Atomic orbital electron populations 1.21773 0.92835 1.02767 1.03570 1.22746 0.95811 0.82220 1.01268 1.86074 1.18916 1.28955 1.89260 1.18743 0.82300 0.93878 0.99796 1.20970 0.93202 0.98136 1.07437 1.20343 0.94363 0.95097 1.02875 1.18605 0.82743 0.93134 1.00535 1.19722 0.92818 0.95099 1.03498 1.20126 0.93744 0.95174 1.04487 1.20326 0.93502 0.91723 1.04192 1.22044 0.96853 0.95044 1.03154 0.87258 1.20090 0.82962 0.88454 0.79119 1.90657 1.62182 1.45794 1.44507 1.46705 1.10157 1.17464 1.60592 1.19163 0.93541 0.81400 0.93144 0.93158 1.22219 0.99321 1.01244 0.97849 1.20997 1.11792 0.95915 1.28240 0.90270 1.24951 0.94967 0.98655 0.93804 1.69882 1.25376 1.22765 1.34320 0.86887 0.81135 0.81639 0.80201 1.19851 1.21151 1.18498 1.22942 0.98146 0.80187 0.98854 1.86031 1.17647 1.34668 1.84178 0.91526 0.90450 0.91503 0.92163 0.92131 0.85085 0.84905 0.84827 0.88813 0.89135 0.77260 0.92850 0.93340 0.95236 0.92192 0.91131 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.15 0.38 -0.43 16 2 C 0.05 0.38 5.46 37.15 0.20 0.59 16 3 O -0.32 -3.37 10.14 -19.68 -0.20 -3.57 16 4 C 0.10 1.11 6.68 -39.29 -0.26 0.85 16 5 C -0.18 -1.79 9.03 -39.51 -0.36 -2.15 16 6 C -0.11 -1.18 9.93 -39.36 -0.39 -1.57 16 7 C 0.09 1.21 6.47 -39.21 -0.25 0.95 16 8 C -0.11 -1.41 5.75 -104.44 -0.60 -2.01 16 9 C -0.12 -1.41 9.60 -39.37 -0.38 -1.79 16 10 C -0.06 -0.81 4.66 -27.81 -0.13 -0.94 16 11 C -0.15 -2.07 2.76 -91.52 -0.25 -2.33 16 12 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 13 C 0.51 9.23 7.12 -10.98 -0.08 9.15 16 14 O -0.55 -11.99 15.45 5.56 0.09 -11.90 16 15 N -0.70 -13.37 4.95 -54.93 -0.27 -13.65 16 16 C 0.23 5.31 2.22 -69.08 -0.15 5.15 16 17 H 0.05 1.28 4.73 -51.93 -0.25 1.03 16 18 C -0.15 -3.13 9.47 37.16 0.35 -2.78 16 19 C -0.53 -13.96 9.05 -34.44 -0.31 -14.28 16 20 H 0.08 2.19 8.06 -52.49 -0.42 1.76 16 21 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 22 N -0.89 -25.81 13.96 55.43 0.77 -25.03 16 23 Si 0.87 21.34 26.99 -169.99 -4.59 16.75 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.26 -6.25 6.82 56.52 0.39 -5.87 16 27 C 0.07 0.91 6.26 37.37 0.23 1.15 16 28 O -0.31 -4.03 10.27 -19.57 -0.20 -4.23 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.36 7.67 -51.92 -0.40 -0.04 16 33 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 34 H 0.13 0.96 6.31 -52.49 -0.33 0.63 16 35 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.09 1.33 7.69 -51.93 -0.40 0.93 16 38 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.39 6.55 8.07 -40.82 -0.33 6.22 16 40 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.12 1.25 7.57 -51.93 -0.39 0.85 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -31.69 368.45 -7.66 -39.35 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -6.72 Total: 5.03 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -2.09 Total: -8.30 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.50 Total: -38.68 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.31 Total: -19.70 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.59 Total: 16.75 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.69 -7.66 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358875809.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.807 kcal (2) G-P(sol) polarization free energy of solvation -31.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds