Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99557 * 2 1 4 4 O 1.20825 * 120.00369 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99756 * 180.27369 * 3 2 1 6 6 H 1.08999 * 109.47496 * 299.72519 * 5 3 2 7 7 C 1.53007 * 109.47267 * 59.72532 * 5 3 2 8 8 N 1.46495 * 109.47309 * 179.72423 * 5 3 2 9 9 C 1.46502 * 120.00138 * 300.00433 * 8 5 3 10 10 C 1.34779 * 120.00122 * 120.00007 * 8 5 3 11 11 O 1.21283 * 119.99982 * 359.97438 * 10 8 5 12 12 C 1.50696 * 120.00273 * 180.02562 * 10 8 5 13 13 C 1.52999 * 109.47515 * 179.97438 * 12 10 8 14 14 H 1.09005 * 109.47071 * 305.37370 * 13 12 10 15 15 C 1.50704 * 109.46993 * 65.36690 * 13 12 10 16 16 H 1.07999 * 119.99848 * 34.61784 * 15 13 12 17 17 C 1.37875 * 120.00219 * 214.62458 * 15 13 12 18 18 N 1.31511 * 120.00322 * 186.44939 * 17 15 13 19 19 Si 1.86802 * 119.99915 * 6.44271 * 17 15 13 20 20 H 1.48500 * 109.46864 * 85.00987 * 19 17 15 21 21 H 1.48498 * 109.47310 * 205.01082 * 19 17 15 22 22 H 1.48502 * 109.47096 * 325.01503 * 19 17 15 23 23 C 1.50698 * 109.47707 * 185.36512 * 13 12 10 24 24 C 1.38240 * 120.00062 * 296.36456 * 23 13 12 25 25 C 1.38231 * 119.99715 * 179.78159 * 24 23 13 26 26 C 1.38231 * 120.00274 * 0.44161 * 25 24 23 27 27 C 1.38236 * 120.00023 * 359.81293 * 26 25 24 28 28 C 1.38232 * 120.00073 * 116.62778 * 23 13 12 29 29 H 1.09005 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47306 * 300.00007 * 1 2 3 31 31 H 1.09001 * 109.47377 * 60.00130 * 1 2 3 32 32 H 1.08996 * 109.46814 * 60.00135 * 7 5 3 33 33 H 1.08999 * 109.47060 * 180.02562 * 7 5 3 34 34 H 1.08996 * 109.46703 * 300.00153 * 7 5 3 35 35 H 1.09000 * 109.47198 * 89.99887 * 9 8 5 36 36 H 1.09002 * 109.46841 * 209.99780 * 9 8 5 37 37 H 1.08999 * 109.46774 * 329.99184 * 9 8 5 38 38 H 1.09000 * 109.46988 * 299.99744 * 12 10 8 39 39 H 1.09000 * 109.47480 * 59.99922 * 12 10 8 40 40 H 0.96998 * 120.00379 * 179.97438 * 18 17 15 41 41 H 1.07998 * 119.99696 * 359.97438 * 24 23 13 42 42 H 1.07999 * 119.99994 * 180.26904 * 25 24 23 43 43 H 1.08000 * 120.00182 * 179.83050 * 26 25 24 44 44 H 1.07998 * 120.00211 * 180.02562 * 27 26 25 45 45 H 1.08008 * 119.99940 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0062 6 1 3.9596 0.7833 0.8834 7 6 4.1083 0.5782 -1.2559 8 7 3.9815 2.6798 -0.0116 9 6 3.5764 3.5593 -1.1110 10 6 4.7363 3.1633 0.9949 11 8 5.0712 2.4354 1.9054 12 6 5.1631 4.6086 0.9897 13 6 6.0039 4.8966 2.2351 14 1 5.4460 4.6060 3.1254 15 6 7.2874 4.1098 2.1676 16 1 7.7652 3.9366 1.2147 17 6 7.8518 3.6108 3.3224 18 7 9.0334 3.0351 3.2814 19 14 6.9379 3.7527 4.9454 20 1 5.9949 2.6139 5.0837 21 1 7.9121 3.7276 6.0659 22 1 6.1800 5.0294 4.9768 23 6 6.3200 6.3687 2.2985 24 6 7.0901 6.9535 1.3106 25 6 7.3762 8.3047 1.3665 26 6 6.8999 9.0694 2.4149 27 6 6.1342 8.4836 3.4056 28 6 5.8443 7.1332 3.3474 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 3.7150 1.0700 -2.1455 33 1 5.1968 0.6349 -1.2601 34 1 3.7993 -0.4671 -1.2519 35 1 2.6246 4.0311 -0.8671 36 1 4.3351 4.3276 -1.2601 37 1 3.4683 2.9735 -2.0238 38 1 5.7551 4.8093 0.0968 39 1 4.2804 5.2481 0.9919 40 1 9.4306 2.6844 4.0939 41 1 7.4656 6.3552 0.4937 42 1 7.9743 8.7625 0.5924 43 1 7.1257 10.1245 2.4600 44 1 5.7616 9.0810 4.2245 45 1 5.2458 6.6755 4.1213 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362048991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = -108.529985 kcal Electronic energy + Delta-G solvation = -27439.533668 eV Core-core repulsion = 23614.763161 eV Total energy + Delta-G solvation = -3824.770506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.93322 -40.77264 -39.85015 -37.80775 -36.74059 -35.84414 -33.82937 -32.85708 -31.59201 -30.27698 -28.68701 -27.92998 -27.75699 -25.40243 -24.24900 -23.29766 -22.26895 -21.14993 -19.97938 -19.02297 -18.88909 -18.07988 -18.03766 -17.48872 -17.13297 -16.78406 -16.30443 -16.14933 -15.66181 -15.40592 -14.88393 -14.83105 -14.55143 -14.37490 -14.22877 -14.09272 -13.92713 -13.59903 -13.40133 -13.31382 -13.23866 -13.18685 -12.96116 -12.81992 -12.71234 -12.49873 -12.07825 -11.90967 -11.84512 -11.79559 -11.57509 -11.47048 -11.08152 -10.69722 -10.55200 -9.73280 -9.60948 -9.29661 -8.21981 -6.17174 0.69449 0.74069 1.02202 1.29998 1.34703 1.37634 1.40658 1.82450 2.18646 2.41195 3.08524 3.24838 3.55099 3.81047 3.92782 4.10123 4.13131 4.23796 4.27533 4.29982 4.30415 4.32177 4.41879 4.49130 4.59422 4.65676 4.66297 4.70383 4.76691 4.85367 4.86920 4.94491 5.05844 5.15750 5.19671 5.26890 5.37162 5.41319 5.45786 5.68840 5.77867 5.83148 6.03706 6.30675 6.36141 6.39822 6.60446 6.81110 7.32037 7.46543 8.94629 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.004096 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.224415 B = 6834.351008 C = 7691.936166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.459 3.541 4 O -0.522 6.522 5 C 0.140 3.860 6 H 0.114 0.886 7 C -0.144 4.144 8 N -0.608 5.608 9 C 0.077 3.923 10 C 0.516 3.484 11 O -0.555 6.555 12 C -0.106 4.106 13 C 0.056 3.944 14 H 0.028 0.972 15 C -0.462 4.462 16 H 0.040 0.960 17 C 0.029 3.971 18 N -0.949 5.949 19 Si 0.916 3.084 20 H -0.289 1.289 21 H -0.297 1.297 22 H -0.235 1.235 23 C -0.062 4.062 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.140 4.140 27 C -0.125 4.125 28 C -0.155 4.155 29 H 0.134 0.866 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.258 0.742 41 H 0.113 0.887 42 H 0.141 0.859 43 H 0.147 0.853 44 H 0.138 0.862 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.339 2.197 -11.319 19.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.301 3.699 4 O -0.410 6.410 5 C 0.034 3.966 6 H 0.132 0.868 7 C -0.202 4.202 8 N -0.344 5.344 9 C -0.065 4.065 10 C 0.306 3.694 11 O -0.431 6.431 12 C -0.146 4.146 13 C 0.036 3.964 14 H 0.046 0.954 15 C -0.500 4.500 16 H 0.059 0.941 17 C -0.168 4.168 18 N -0.591 5.591 19 Si 0.743 3.257 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.159 1.159 23 C -0.063 4.063 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.158 4.158 27 C -0.143 4.143 28 C -0.174 4.174 29 H 0.152 0.848 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.079 0.921 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.067 0.933 41 H 0.131 0.869 42 H 0.159 0.841 43 H 0.164 0.836 44 H 0.156 0.844 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.278 2.026 -10.730 18.779 hybrid contribution -0.206 -0.558 1.245 1.380 sum -15.484 1.468 -9.486 18.218 Atomic orbital electron populations 1.23577 0.74535 1.05843 1.02511 1.86508 1.25171 1.32205 1.83553 1.24321 0.92249 0.81722 0.71623 1.90624 1.67386 1.37021 1.45982 1.20583 0.86498 0.84996 1.04552 0.86842 1.22039 1.02314 1.01573 0.94252 1.47801 1.52199 1.09730 1.24681 1.22011 1.01211 0.94611 0.88644 1.21203 0.76518 0.91179 0.80508 1.90712 1.54975 1.60477 1.36976 1.21609 1.00728 0.91000 1.01265 1.18030 0.94495 0.89331 0.94525 0.95387 1.20764 1.05580 1.30385 0.93250 0.94139 1.25507 0.94782 0.94795 1.01683 1.70012 1.17387 1.42643 1.29017 0.86231 0.78858 0.79933 0.80648 1.21543 1.22408 1.15857 1.20462 0.95765 0.95589 0.94474 1.21018 0.98075 0.95166 0.99255 1.21408 0.99952 0.93492 0.99331 1.21337 0.99003 1.00812 0.94634 1.21318 0.99177 0.94125 0.99673 1.21247 1.02389 0.95138 0.98586 0.84794 0.92676 0.91239 0.89925 0.91015 0.88424 0.92083 0.89306 0.89279 0.87851 0.88351 0.93284 0.86861 0.84104 0.83568 0.84408 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.11 10.46 -51.45 -0.54 -8.65 16 3 C 0.46 12.50 7.16 71.24 0.51 13.01 16 4 O -0.52 -16.20 14.48 21.97 0.32 -15.88 16 5 C 0.14 3.97 3.16 44.25 0.14 4.11 16 6 H 0.11 3.83 6.90 -2.39 -0.02 3.82 16 7 C -0.14 -2.93 9.10 71.98 0.66 -2.28 16 8 N -0.61 -19.04 2.54 -826.79 -2.10 -21.14 16 9 C 0.08 1.74 9.05 127.77 1.16 2.90 16 10 C 0.52 20.95 7.43 87.66 0.65 21.60 16 11 O -0.56 -28.28 14.32 -3.04 -0.04 -28.32 16 12 C -0.11 -4.00 3.49 29.85 0.10 -3.89 16 13 C 0.06 2.58 1.28 -12.29 -0.02 2.56 16 14 H 0.03 1.41 4.78 -2.38 -0.01 1.40 16 15 C -0.46 -26.08 6.94 25.60 0.18 -25.90 16 16 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 17 C 0.03 1.76 5.47 84.65 0.46 2.22 16 18 N -0.95 -61.68 13.96 21.45 0.30 -61.38 16 19 Si 0.92 48.82 27.04 68.60 1.85 50.67 16 20 H -0.29 -15.98 7.11 99.48 0.71 -15.27 16 21 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 22 H -0.24 -11.37 5.15 99.48 0.51 -10.86 16 23 C -0.06 -2.59 4.77 -19.87 -0.09 -2.68 16 24 C -0.12 -4.38 8.87 22.27 0.20 -4.18 16 25 C -0.12 -3.80 10.05 22.27 0.22 -3.57 16 26 C -0.14 -3.96 10.05 22.27 0.22 -3.73 16 27 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 28 C -0.16 -5.95 9.13 22.27 0.20 -5.75 16 29 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 31 H 0.07 0.99 8.13 -2.39 -0.02 0.98 16 32 H 0.08 1.34 6.66 -2.39 -0.02 1.32 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.10 1.63 8.11 -2.39 -0.02 1.61 16 35 H 0.06 1.45 7.22 -2.39 -0.02 1.43 16 36 H 0.09 1.79 6.44 -2.39 -0.02 1.78 16 37 H 0.09 1.56 6.43 -2.39 -0.02 1.54 16 38 H 0.10 3.51 7.06 -2.39 -0.02 3.50 16 39 H 0.10 3.15 8.11 -2.39 -0.02 3.13 16 40 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 41 H 0.11 4.26 7.77 -2.91 -0.02 4.24 16 42 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 43 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 44 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 45 H 0.10 4.05 6.96 -2.91 -0.02 4.03 16 Total: -1.00 -79.98 368.22 6.60 -73.38 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.79 Total: 18.94 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: 6.01 Total: -7.63 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.80 Total: -82.52 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -0.26 Total: -52.86 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.85 Total: 50.67 kcal Total: -79.98 6.60 -73.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362048991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.148 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds