Wall clock time and date at job start Tue Mar 31 2020 12:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21266 * 120.00621 * 2 1 4 4 C 1.47022 * 119.99918 * 179.97438 * 2 1 3 5 5 C 1.39976 * 120.07453 * 354.60072 * 4 2 1 6 6 C 1.37552 * 120.03632 * 180.25167 * 5 4 2 7 7 C 1.39758 * 120.19853 * 359.44955 * 6 5 4 8 8 C 1.48092 * 119.91842 * 180.29925 * 7 6 5 9 9 O 1.21520 * 119.99937 * 180.25249 * 8 7 6 10 10 N 1.34777 * 120.00175 * 0.24669 * 8 7 6 11 11 C 1.46508 * 119.99896 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.46909 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.47289 * 300.00041 * 12 11 10 14 14 C 1.52994 * 109.47152 * 60.00609 * 12 11 10 15 15 C 1.52999 * 109.46882 * 180.02562 * 12 11 10 16 16 C 1.50703 * 109.47219 * 180.02562 * 15 12 11 17 17 H 1.07994 * 119.99826 * 359.97438 * 16 15 12 18 18 C 1.37877 * 119.99831 * 179.97438 * 16 15 12 19 19 N 1.31507 * 120.00486 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99609 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47211 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47076 * 120.00198 * 20 18 16 23 23 H 1.48492 * 109.47433 * 240.00278 * 20 18 16 24 24 C 1.39247 * 120.15767 * 0.55255 * 7 6 5 25 25 C 1.38616 * 119.96017 * 359.72498 * 24 7 6 26 26 O 1.35618 * 120.10414 * 180.02562 * 25 24 7 27 27 H 1.08999 * 109.47677 * 185.04974 * 1 2 3 28 28 H 1.09002 * 109.47395 * 305.06062 * 1 2 3 29 29 H 1.09008 * 109.47072 * 65.05127 * 1 2 3 30 30 H 1.07997 * 119.98360 * 359.97438 * 5 4 2 31 31 H 1.07997 * 119.90188 * 179.72260 * 6 5 4 32 32 H 0.96994 * 119.99996 * 0.02562 * 10 8 7 33 33 H 1.09001 * 109.47393 * 300.00674 * 11 10 8 34 34 H 1.09003 * 109.46822 * 60.00411 * 11 10 8 35 35 H 1.09006 * 109.46812 * 60.00220 * 13 12 11 36 36 H 1.08995 * 109.47075 * 180.02562 * 13 12 11 37 37 H 1.08995 * 109.46856 * 300.00426 * 13 12 11 38 38 H 1.08995 * 109.47674 * 59.99729 * 14 12 11 39 39 H 1.09002 * 109.47197 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.47102 * 299.99563 * 14 12 11 41 41 H 1.09001 * 109.46810 * 299.99900 * 15 12 11 42 42 H 1.08995 * 109.47591 * 59.99373 * 15 12 11 43 43 H 0.96996 * 120.00728 * 180.02562 * 19 18 16 44 44 H 1.07999 * 120.02273 * 179.75340 * 24 7 6 45 45 H 0.96696 * 113.99578 * 269.98054 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0501 0.0000 4 6 2.2420 -1.2733 0.0006 5 6 1.5484 -2.4836 0.1151 6 6 2.2373 -3.6742 0.1207 7 6 3.6297 -3.6812 0.0008 8 6 4.3646 -4.9669 0.0010 9 8 5.5757 -4.9745 -0.0986 10 7 3.6903 -6.1286 0.1117 11 6 4.4174 -7.4005 0.1112 12 6 3.4238 -8.5559 0.2475 13 6 2.6500 -8.4112 1.5596 14 6 2.4447 -8.5279 -0.9278 15 6 4.1831 -9.8842 0.2477 16 6 3.2044 -11.0223 0.3813 17 1 2.1467 -10.8186 0.4588 18 6 3.6594 -12.3236 0.4046 19 7 4.9475 -12.5717 0.3108 20 14 2.4463 -13.7344 0.5709 21 1 1.0664 -13.1928 0.6590 22 1 2.5543 -14.6224 -0.6143 23 1 2.7537 -14.5093 1.7997 24 6 4.3281 -2.4819 -0.1135 25 6 3.6409 -1.2781 -0.1142 26 8 4.3180 -0.1084 -0.2260 27 1 -0.3634 -1.0236 0.0905 28 1 -0.3634 0.5903 0.8412 29 1 -0.3634 0.4335 -0.9318 30 1 0.4720 -2.4826 0.2036 31 1 1.7003 -4.6065 0.2137 32 1 2.7236 -6.1226 0.1909 33 1 4.9684 -7.5038 -0.8236 34 1 5.1153 -7.4203 0.9484 35 1 2.1091 -7.4648 1.5598 36 1 1.9425 -9.2345 1.6568 37 1 3.3476 -8.4312 2.3968 38 1 2.9959 -8.6310 -1.8625 39 1 1.7371 -9.3513 -0.8310 40 1 1.9038 -7.5816 -0.9276 41 1 4.7346 -9.9875 -0.6868 42 1 4.8805 -9.9040 1.0851 43 1 5.2676 -13.4872 0.3268 44 1 5.4044 -2.4897 -0.2021 45 1 4.5868 0.2729 0.6211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412345670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:56 Heat of formation + Delta-G solvation = -103.961985 kcal Electronic energy + Delta-G solvation = -26109.874738 eV Core-core repulsion = 22285.302315 eV Total energy + Delta-G solvation = -3824.572423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92892 -39.78735 -38.47476 -37.29319 -36.82571 -33.81853 -32.63796 -32.11638 -30.28283 -29.81999 -27.24764 -26.59590 -26.59426 -24.73458 -22.98152 -22.79491 -21.06731 -20.21759 -19.19125 -18.08786 -17.28501 -16.90942 -16.60601 -16.25004 -15.68673 -15.47870 -15.20819 -15.04499 -14.74153 -14.51683 -14.46987 -13.98160 -13.75455 -13.30747 -13.17191 -12.85082 -12.76061 -12.68893 -12.44275 -12.15218 -12.11733 -12.01912 -11.29111 -11.23811 -11.08296 -10.88615 -10.71136 -10.48480 -10.30585 -10.18608 -9.95651 -9.93007 -9.50869 -9.25767 -9.19348 -8.97613 -8.86351 -8.40692 -6.04353 -4.05930 -0.08980 0.79170 1.77235 2.73109 3.11291 3.26932 3.35372 3.37121 3.43954 3.57318 3.79564 4.22653 4.40664 4.42424 4.61841 4.66408 4.85502 4.94812 4.96832 5.12282 5.31202 5.36771 5.40352 5.46383 5.53632 5.65796 5.67963 5.81357 5.84424 6.07087 6.11619 6.15345 6.21090 6.29924 6.42455 6.55228 6.64846 6.97700 7.00245 7.04648 7.10922 7.27295 7.53930 7.59274 7.70222 7.93927 8.19104 8.35482 8.98998 9.57547 11.07087 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.028396 B = 0.002297 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.817131 B =12187.959012 C =12968.442321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.393 3.607 3 O -0.444 6.444 4 C -0.186 4.186 5 C -0.066 4.066 6 C -0.112 4.112 7 C -0.077 4.077 8 C 0.546 3.454 9 O -0.533 6.533 10 N -0.711 5.711 11 C 0.126 3.874 12 C -0.073 4.073 13 C -0.128 4.128 14 C -0.128 4.128 15 C 0.035 3.965 16 C -0.511 4.511 17 H 0.060 0.940 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.103 4.103 25 C 0.160 3.840 26 O -0.479 6.479 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.145 0.855 31 H 0.137 0.863 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.068 0.932 40 H 0.027 0.973 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.260 0.740 44 H 0.150 0.850 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.067 22.578 1.164 24.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.270 3.730 3 O -0.318 6.318 4 C -0.188 4.188 5 C -0.084 4.084 6 C -0.131 4.131 7 C -0.080 4.080 8 C 0.331 3.669 9 O -0.411 6.411 10 N -0.363 5.363 11 C 0.004 3.996 12 C -0.073 4.073 13 C -0.185 4.185 14 C -0.185 4.185 15 C -0.002 4.002 16 C -0.550 4.550 17 H 0.078 0.922 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.123 4.123 25 C 0.115 3.885 26 O -0.290 6.290 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.163 0.837 31 H 0.155 0.845 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 44 H 0.167 0.833 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -8.823 22.873 0.498 24.521 hybrid contribution -0.970 -1.007 0.574 1.511 sum -9.792 21.866 1.072 23.982 Atomic orbital electron populations 1.22251 0.93541 1.04937 1.05113 1.22356 0.91640 0.87309 0.71661 1.90567 1.71922 1.33987 1.35362 1.21128 0.94099 0.95959 1.07583 1.21361 1.00435 0.90543 0.96022 1.21325 0.93025 0.98909 0.99832 1.20194 0.93754 0.93890 1.00190 1.18249 0.87261 0.83723 0.77646 1.90790 1.13513 1.87388 1.49427 1.46151 1.11049 1.06195 1.72873 1.21731 0.94953 0.80755 1.02168 1.20919 0.95269 0.96018 0.95106 1.21776 1.00149 0.99643 0.96939 1.21773 0.99216 0.99738 0.97796 1.19101 0.95082 0.88446 0.97586 1.21199 0.93326 0.90616 1.49812 0.92186 1.25018 0.94991 0.98982 0.95537 1.69964 1.12812 1.19894 1.50625 0.86590 0.81429 0.82650 0.77628 1.19805 1.21126 1.21125 1.21606 1.01935 0.90154 0.98565 1.18552 0.88822 0.86011 0.95153 1.84734 1.74667 1.34843 1.34765 0.89685 0.88764 0.88545 0.83732 0.84507 0.76475 0.91427 0.91422 0.95362 0.91275 0.93251 0.93241 0.91273 0.95354 0.96271 0.96272 0.93047 0.83254 0.74399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.91 10.19 36.00 0.37 -0.55 16 2 C 0.39 3.34 7.21 -30.75 -0.22 3.12 16 3 O -0.44 -5.21 15.91 -16.35 -0.26 -5.47 16 4 C -0.19 -1.63 5.88 -104.89 -0.62 -2.25 16 5 C -0.07 -0.44 9.42 -39.18 -0.37 -0.81 16 6 C -0.11 -0.92 9.51 -39.26 -0.37 -1.29 16 7 C -0.08 -0.86 5.87 -104.91 -0.62 -1.48 16 8 C 0.55 7.83 7.78 -12.22 -0.10 7.74 16 9 O -0.53 -9.69 16.32 5.35 0.09 -9.61 16 10 N -0.71 -9.57 4.91 -61.17 -0.30 -9.87 16 11 C 0.13 2.10 4.56 -4.04 -0.02 2.09 16 12 C -0.07 -1.30 0.54 -154.51 -0.08 -1.38 16 13 C -0.13 -2.08 8.05 37.16 0.30 -1.78 16 14 C -0.13 -2.09 8.05 37.15 0.30 -1.79 16 15 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 16 C -0.51 -13.14 7.65 -34.44 -0.26 -13.40 16 17 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 19 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 C -0.10 -1.16 9.52 -39.07 -0.37 -1.53 16 25 C 0.16 1.66 6.71 -38.65 -0.26 1.40 16 26 O -0.48 -4.92 11.57 -40.47 -0.47 -5.39 16 27 H 0.08 0.21 5.61 -51.93 -0.29 -0.08 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.10 0.39 8.14 -51.92 -0.42 -0.04 16 30 H 0.15 0.49 5.93 -52.49 -0.31 0.18 16 31 H 0.14 0.84 6.38 -52.49 -0.33 0.50 16 32 H 0.40 4.32 4.18 -40.82 -0.17 4.15 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.03 0.36 6.86 -51.93 -0.36 0.00 16 36 H 0.07 1.22 6.62 -51.93 -0.34 0.88 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 40 H 0.03 0.36 6.86 -51.93 -0.36 0.01 16 41 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.15 1.75 7.63 -52.49 -0.40 1.35 16 45 H 0.40 2.48 9.06 45.56 0.41 2.89 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -33.64 368.17 -7.52 -41.16 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -5.31 Total: 2.87 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -2.53 Total: -9.78 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.44 Total: -35.04 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.64 Total: -20.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.64 -7.52 -41.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412345670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.802 kcal (2) G-P(sol) polarization free energy of solvation -33.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds