Wall clock time and date at job start Tue Mar 31 2020 12:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46998 * 2 1 4 4 C 1.50701 * 109.47170 * 120.00054 * 2 1 3 5 5 O 1.20827 * 120.00450 * 120.00296 * 4 2 1 6 6 O 1.34234 * 119.99940 * 300.00509 * 4 2 1 7 7 C 1.45197 * 117.00169 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47280 * 59.99521 * 7 6 4 9 9 C 1.52996 * 109.47404 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.46935 * 299.99919 * 7 6 4 11 11 C 1.50696 * 109.47293 * 240.00205 * 2 1 3 12 12 O 1.21279 * 120.00044 * 246.44521 * 11 2 1 13 13 N 1.34774 * 120.00168 * 66.44807 * 11 2 1 14 14 C 1.37142 * 119.99801 * 5.73743 * 13 11 2 15 15 H 1.07996 * 120.00673 * 55.76979 * 14 13 11 16 16 C 1.38897 * 119.99339 * 235.77160 * 14 13 11 17 17 N 1.31423 * 119.99684 * 188.10709 * 16 14 13 18 18 Si 1.86794 * 120.00382 * 8.11307 * 16 14 13 19 19 H 1.48495 * 109.47450 * 95.35096 * 18 16 14 20 20 H 1.48503 * 109.47013 * 215.35739 * 18 16 14 21 21 H 1.48506 * 109.46807 * 335.34798 * 18 16 14 22 22 C 1.39785 * 120.00183 * 185.73131 * 13 11 2 23 23 C 1.38964 * 120.07941 * 8.46806 * 22 13 11 24 24 C 1.38080 * 119.92507 * 179.74011 * 23 22 13 25 25 C 1.38313 * 120.07528 * 0.53342 * 24 23 22 26 26 C 1.38309 * 120.15419 * 359.72431 * 25 24 23 27 27 C 1.38077 * 120.08161 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47718 * 294.91347 * 1 2 3 29 29 H 1.09004 * 109.47266 * 54.91236 * 1 2 3 30 30 H 1.09004 * 109.47008 * 174.90741 * 1 2 3 31 31 H 1.09000 * 109.47508 * 60.00042 * 8 7 6 32 32 H 1.08998 * 109.47756 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47307 * 300.00423 * 8 7 6 34 34 H 1.09008 * 109.46781 * 59.99714 * 9 7 6 35 35 H 1.09001 * 109.47129 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.47362 * 299.99981 * 9 7 6 37 37 H 1.09000 * 109.47103 * 59.99913 * 10 7 6 38 38 H 1.09001 * 109.47401 * 179.97438 * 10 7 6 39 39 H 1.08998 * 109.46929 * 299.99974 * 10 7 6 40 40 H 0.96998 * 120.00064 * 179.97438 * 17 16 14 41 41 H 1.08008 * 120.03641 * 0.02562 * 23 22 13 42 42 H 1.07999 * 119.96415 * 180.25392 * 24 23 22 43 43 H 1.07994 * 119.91893 * 179.70066 * 25 24 23 44 44 H 1.07999 * 119.95850 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.03969 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1197 6 8 1.7079 -0.2519 2.4496 7 6 2.2275 -0.9857 3.5897 8 6 3.7568 -0.9841 3.5433 9 6 1.7564 -0.3186 4.8834 10 6 1.7175 -2.4275 3.5436 11 6 2.0323 -0.7103 -1.2304 12 8 2.6302 -1.7600 -1.1230 13 7 1.8173 -0.1791 -2.4503 14 6 1.2467 1.0625 -2.5665 15 1 1.6944 1.9112 -2.0708 16 6 0.0929 1.2286 -3.3218 17 7 -0.3645 2.4362 -3.5659 18 14 -0.8086 -0.2645 -3.9906 19 1 -1.9049 -0.6381 -3.0613 20 1 -1.3778 0.0572 -5.3239 21 1 0.1405 -1.3995 -4.1184 22 6 2.1759 -0.8937 -3.5969 23 6 2.5892 -2.2163 -3.4925 24 6 2.9376 -2.9208 -4.6278 25 6 2.8861 -2.3081 -5.8668 26 6 2.4803 -0.9902 -5.9739 27 6 2.1256 -0.2813 -4.8434 28 1 -0.3634 0.4329 0.9320 29 1 -0.3634 0.5907 -0.8409 30 1 -0.3633 -1.0237 -0.0912 31 1 4.1203 0.0430 3.5760 32 1 4.1470 -1.5353 4.3988 33 1 4.0929 -1.4591 2.6216 34 1 0.6668 -0.3194 4.9167 35 1 2.1461 -0.8698 5.7392 36 1 2.1201 0.7084 4.9161 37 1 2.0535 -2.9025 2.6219 38 1 2.1079 -2.9786 4.3992 39 1 0.6280 -2.4286 3.5767 40 1 -1.1700 2.5522 -4.0937 41 1 2.6334 -2.6941 -2.5249 42 1 3.2549 -3.9500 -4.5479 43 1 3.1638 -2.8600 -6.7526 44 1 2.4409 -0.5151 -6.9429 45 1 1.8092 0.7479 -4.9277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415068474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:00 Heat of formation + Delta-G solvation = -69.744358 kcal Electronic energy + Delta-G solvation = -28339.812542 eV Core-core repulsion = 24516.723906 eV Total energy + Delta-G solvation = -3823.088635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.81285 -39.89603 -37.75543 -36.42483 -35.13078 -34.06416 -32.62204 -32.26279 -30.05141 -28.87583 -27.40786 -27.35894 -25.43815 -24.72135 -23.06264 -21.80693 -21.11124 -19.59210 -19.01741 -17.99081 -16.98612 -16.20269 -16.04178 -15.81965 -15.72056 -15.38845 -14.57831 -14.27712 -14.15883 -13.92871 -13.66064 -13.42804 -13.22859 -12.95750 -12.70528 -12.50491 -12.46918 -12.30040 -12.14190 -12.00610 -11.85295 -11.80199 -11.56144 -11.43226 -11.29666 -11.10130 -10.90901 -10.82527 -10.72941 -10.29944 -10.18363 -10.05136 -9.48417 -9.44442 -8.83923 -8.34099 -8.10278 -6.99190 -6.64512 -4.56751 2.06625 2.21262 2.67843 2.81642 3.06784 3.16441 3.32025 3.49774 4.02864 4.16358 4.58053 4.74472 4.77818 4.81021 4.89951 4.95387 5.36231 5.44647 5.52303 5.57292 5.62803 5.63535 5.67345 5.71362 5.75476 5.86499 5.91392 5.93106 5.96863 6.19954 6.28406 6.30647 6.34061 6.36249 6.42631 6.55983 6.75124 6.82002 6.86523 7.17792 7.27052 7.31961 7.37305 7.70682 7.94723 8.15301 8.27951 8.72737 9.00749 9.32705 10.39147 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.004625 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.862310 B = 6052.598106 C = 7084.359871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.080 4.080 3 H 0.130 0.870 4 C 0.464 3.536 5 O -0.464 6.464 6 O -0.353 6.353 7 C 0.116 3.884 8 C -0.183 4.183 9 C -0.139 4.139 10 C -0.183 4.183 11 C 0.500 3.500 12 O -0.519 6.519 13 N -0.409 5.409 14 C -0.370 4.370 15 H 0.108 0.892 16 C 0.090 3.910 17 N -0.852 5.852 18 Si 0.846 3.154 19 H -0.275 1.275 20 H -0.277 1.277 21 H -0.231 1.231 22 C 0.177 3.823 23 C -0.183 4.183 24 C -0.106 4.106 25 C -0.173 4.173 26 C -0.109 4.109 27 C -0.154 4.154 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.280 0.720 41 H 0.170 0.830 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.538 -4.071 9.016 10.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.102 4.102 3 H 0.148 0.852 4 C 0.305 3.695 5 O -0.348 6.348 6 O -0.272 6.272 7 C 0.080 3.920 8 C -0.240 4.240 9 C -0.196 4.196 10 C -0.240 4.240 11 C 0.290 3.710 12 O -0.398 6.398 13 N -0.120 5.120 14 C -0.496 4.496 15 H 0.126 0.874 16 C -0.121 4.121 17 N -0.484 5.484 18 Si 0.670 3.330 19 H -0.201 1.201 20 H -0.202 1.202 21 H -0.153 1.153 22 C 0.081 3.919 23 C -0.203 4.203 24 C -0.125 4.125 25 C -0.192 4.192 26 C -0.128 4.128 27 C -0.174 4.174 28 H 0.087 0.913 29 H 0.121 0.879 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.187 0.813 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.131 0.869 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.899 -4.729 9.068 10.402 hybrid contribution -0.611 -0.381 -0.540 0.900 sum 1.288 -5.110 8.529 10.026 Atomic orbital electron populations 1.21721 0.90119 1.02908 1.04863 1.20667 0.99906 1.01597 0.88038 0.85250 1.23294 0.78358 0.83550 0.84337 1.90659 1.33439 1.24261 1.86419 1.86546 1.70191 1.55802 1.14624 1.22077 0.93928 0.91703 0.84275 1.22487 0.94257 1.02770 1.04515 1.21829 1.02299 1.01307 0.94155 1.22486 1.01528 0.95478 1.04517 1.20226 0.81086 0.84912 0.84781 1.90446 1.41229 1.22602 1.85541 1.41316 1.52284 1.16595 1.01778 1.18958 1.08837 0.84090 1.37700 0.87444 1.25453 0.95476 0.96527 0.94630 1.69670 1.22302 1.21208 1.35262 0.87304 0.81180 0.85204 0.79293 1.20085 1.20189 1.15340 1.18378 0.94481 0.91294 0.87773 1.22474 1.02508 0.93637 1.01677 1.20967 1.00037 0.98966 0.92549 1.20880 1.05549 0.95737 0.97060 1.20823 0.99833 0.94532 0.97571 1.21074 1.03990 1.01270 0.91103 0.91282 0.87939 0.93050 0.92116 0.91458 0.89581 0.91561 0.90726 0.91541 0.89535 0.91489 0.92135 0.90980 0.81343 0.87143 0.87516 0.86940 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.95 37.15 0.33 -2.12 16 2 C -0.08 -1.52 2.45 -92.93 -0.23 -1.75 16 3 H 0.13 2.31 7.60 -51.93 -0.39 1.91 16 4 C 0.46 8.48 6.56 36.01 0.24 8.72 16 5 O -0.46 -9.48 9.71 -26.85 -0.26 -9.74 16 6 O -0.35 -5.56 9.69 -39.27 -0.38 -5.94 16 7 C 0.12 1.51 1.13 -90.62 -0.10 1.41 16 8 C -0.18 -2.33 8.37 37.16 0.31 -2.02 16 9 C -0.14 -1.36 8.85 37.16 0.33 -1.03 16 10 C -0.18 -2.34 8.37 37.16 0.31 -2.03 16 11 C 0.50 11.18 6.84 -10.99 -0.08 11.11 16 12 O -0.52 -12.48 10.74 -18.91 -0.20 -12.68 16 13 N -0.41 -9.49 2.15 -58.98 -0.13 -9.62 16 14 C -0.37 -8.78 6.31 -14.93 -0.09 -8.88 16 15 H 0.11 2.67 7.76 -52.49 -0.41 2.26 16 16 C 0.09 2.18 3.64 -17.48 -0.06 2.11 16 17 N -0.85 -21.54 13.96 55.49 0.77 -20.76 16 18 Si 0.85 19.40 25.72 -169.99 -4.37 15.03 16 19 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.23 -5.46 4.68 56.52 0.26 -5.19 16 22 C 0.18 4.09 3.85 -83.69 -0.32 3.77 16 23 C -0.18 -4.07 8.80 -39.37 -0.35 -4.41 16 24 C -0.11 -2.05 10.04 -39.61 -0.40 -2.45 16 25 C -0.17 -3.14 10.04 -39.53 -0.40 -3.53 16 26 C -0.11 -2.09 10.04 -39.61 -0.40 -2.49 16 27 C -0.15 -3.38 6.52 -39.37 -0.26 -3.64 16 28 H 0.07 1.04 7.99 -51.93 -0.42 0.62 16 29 H 0.10 2.02 5.84 -51.93 -0.30 1.72 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.34 5.89 -51.93 -0.31 1.04 16 34 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.36 5.89 -51.93 -0.31 1.05 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.17 3.94 4.76 -54.99 -0.26 3.68 16 42 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 45 H 0.14 3.18 6.03 -52.49 -0.32 2.86 16 LS Contribution 351.00 15.07 5.29 5.29 Total: -1.00 -27.90 351.00 -7.07 -34.98 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -6.63 Total: 10.67 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.16 Total: -7.23 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 0.65 Total: -30.38 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.84 Total: -28.36 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.37 Total: 15.03 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.90 -7.07 -34.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415068474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.767 kcal (2) G-P(sol) polarization free energy of solvation -27.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds