Wall clock time and date at job start Tue Mar 31 2020 12:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46998 * 2 1 4 4 C 1.50701 * 109.47170 * 120.00054 * 2 1 3 5 5 O 1.20827 * 120.00450 * 120.00296 * 4 2 1 6 6 O 1.34234 * 119.99940 * 300.00509 * 4 2 1 7 7 C 1.45197 * 117.00169 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.47280 * 59.99521 * 7 6 4 9 9 C 1.52996 * 109.47404 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.46935 * 299.99919 * 7 6 4 11 11 C 1.50696 * 109.47293 * 240.00205 * 2 1 3 12 12 O 1.21279 * 120.00044 * 246.44521 * 11 2 1 13 13 N 1.34774 * 120.00168 * 66.44807 * 11 2 1 14 14 C 1.37142 * 119.99801 * 5.73743 * 13 11 2 15 15 H 1.07996 * 120.00673 * 55.76979 * 14 13 11 16 16 C 1.38897 * 119.99339 * 235.77160 * 14 13 11 17 17 N 1.31423 * 119.99684 * 188.10709 * 16 14 13 18 18 Si 1.86794 * 120.00382 * 8.11307 * 16 14 13 19 19 H 1.48495 * 109.47450 * 95.35096 * 18 16 14 20 20 H 1.48503 * 109.47013 * 215.35739 * 18 16 14 21 21 H 1.48506 * 109.46807 * 335.34798 * 18 16 14 22 22 C 1.39785 * 120.00183 * 185.73131 * 13 11 2 23 23 C 1.38964 * 120.07941 * 8.46806 * 22 13 11 24 24 C 1.38080 * 119.92507 * 179.74011 * 23 22 13 25 25 C 1.38313 * 120.07528 * 0.53342 * 24 23 22 26 26 C 1.38309 * 120.15419 * 359.72431 * 25 24 23 27 27 C 1.38077 * 120.08161 * 0.02562 * 26 25 24 28 28 H 1.09001 * 109.47718 * 294.91347 * 1 2 3 29 29 H 1.09004 * 109.47266 * 54.91236 * 1 2 3 30 30 H 1.09004 * 109.47008 * 174.90741 * 1 2 3 31 31 H 1.09000 * 109.47508 * 60.00042 * 8 7 6 32 32 H 1.08998 * 109.47756 * 180.02562 * 8 7 6 33 33 H 1.09000 * 109.47307 * 300.00423 * 8 7 6 34 34 H 1.09008 * 109.46781 * 59.99714 * 9 7 6 35 35 H 1.09001 * 109.47129 * 179.97438 * 9 7 6 36 36 H 1.09001 * 109.47362 * 299.99981 * 9 7 6 37 37 H 1.09000 * 109.47103 * 59.99913 * 10 7 6 38 38 H 1.09001 * 109.47401 * 179.97438 * 10 7 6 39 39 H 1.08998 * 109.46929 * 299.99974 * 10 7 6 40 40 H 0.96998 * 120.00064 * 179.97438 * 17 16 14 41 41 H 1.08008 * 120.03641 * 0.02562 * 23 22 13 42 42 H 1.07999 * 119.96415 * 180.25392 * 24 23 22 43 43 H 1.07994 * 119.91893 * 179.70066 * 25 24 23 44 44 H 1.07999 * 119.95850 * 180.02562 * 26 25 24 45 45 H 1.07997 * 120.03969 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7270 -1.6928 1.1197 6 8 1.7079 -0.2519 2.4496 7 6 2.2275 -0.9857 3.5897 8 6 3.7568 -0.9841 3.5433 9 6 1.7564 -0.3186 4.8834 10 6 1.7175 -2.4275 3.5436 11 6 2.0323 -0.7103 -1.2304 12 8 2.6302 -1.7600 -1.1230 13 7 1.8173 -0.1791 -2.4503 14 6 1.2467 1.0625 -2.5665 15 1 1.6944 1.9112 -2.0708 16 6 0.0929 1.2286 -3.3218 17 7 -0.3645 2.4362 -3.5659 18 14 -0.8086 -0.2645 -3.9906 19 1 -1.9049 -0.6381 -3.0613 20 1 -1.3778 0.0572 -5.3239 21 1 0.1405 -1.3995 -4.1184 22 6 2.1759 -0.8937 -3.5969 23 6 2.5892 -2.2163 -3.4925 24 6 2.9376 -2.9208 -4.6278 25 6 2.8861 -2.3081 -5.8668 26 6 2.4803 -0.9902 -5.9739 27 6 2.1256 -0.2813 -4.8434 28 1 -0.3634 0.4329 0.9320 29 1 -0.3634 0.5907 -0.8409 30 1 -0.3633 -1.0237 -0.0912 31 1 4.1203 0.0430 3.5760 32 1 4.1470 -1.5353 4.3988 33 1 4.0929 -1.4591 2.6216 34 1 0.6668 -0.3194 4.9167 35 1 2.1461 -0.8698 5.7392 36 1 2.1201 0.7084 4.9161 37 1 2.0535 -2.9025 2.6219 38 1 2.1079 -2.9786 4.3992 39 1 0.6280 -2.4286 3.5767 40 1 -1.1700 2.5522 -4.0937 41 1 2.6334 -2.6941 -2.5249 42 1 3.2549 -3.9500 -4.5479 43 1 3.1638 -2.8600 -6.7526 44 1 2.4409 -0.5151 -6.9429 45 1 1.8092 0.7479 -4.9277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415068474.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:00 Heat of formation + Delta-G solvation = -82.974069 kcal Electronic energy + Delta-G solvation = -28340.386225 eV Core-core repulsion = 24516.723906 eV Total energy + Delta-G solvation = -3823.662319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.31981 -41.42251 -39.30610 -37.80722 -36.88972 -35.30875 -34.15129 -34.02017 -31.64702 -30.49030 -28.37130 -28.26406 -27.24423 -26.23262 -24.56290 -23.35869 -22.62748 -21.13441 -20.48772 -19.63678 -18.49359 -17.77426 -17.44757 -17.37969 -17.19398 -16.83464 -16.17586 -15.93929 -15.56861 -15.29935 -15.05747 -14.86253 -14.67423 -14.52509 -14.37493 -14.07028 -13.99239 -13.62027 -13.29864 -13.16097 -13.09281 -12.96079 -12.89272 -12.81742 -12.75106 -12.54108 -12.46329 -12.30958 -12.01316 -11.91349 -11.82170 -11.34470 -11.27294 -10.87658 -10.66340 -10.03368 -9.71102 -8.73285 -8.52344 -6.46810 0.45394 0.60117 1.22186 1.24942 1.30476 1.46255 1.49180 1.78665 2.18378 2.54454 2.76696 3.14201 3.48862 3.76732 3.81180 3.85087 3.98299 4.06735 4.12956 4.21192 4.25092 4.48095 4.59400 4.60719 4.71900 4.75594 4.76883 4.81283 4.82622 4.83748 4.89957 4.91092 4.91725 5.13754 5.25345 5.27535 5.29842 5.33968 5.51423 5.55810 5.62991 5.69616 5.75680 6.00888 6.07176 6.41768 6.85736 6.90970 7.20159 7.54652 8.51812 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017133 B = 0.004625 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.862310 B = 6052.598106 C = 7084.359871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.080 4.080 3 H 0.137 0.863 4 C 0.470 3.530 5 O -0.489 6.489 6 O -0.351 6.351 7 C 0.103 3.897 8 C -0.180 4.180 9 C -0.133 4.133 10 C -0.180 4.180 11 C 0.492 3.508 12 O -0.541 6.541 13 N -0.418 5.418 14 C -0.357 4.357 15 H 0.091 0.909 16 C 0.075 3.925 17 N -0.880 5.880 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.275 1.275 21 H -0.240 1.240 22 C 0.149 3.851 23 C -0.205 4.205 24 C -0.106 4.106 25 C -0.160 4.160 26 C -0.107 4.107 27 C -0.173 4.173 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.102 0.898 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.284 0.716 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.561 -4.976 9.353 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.102 4.102 3 H 0.155 0.845 4 C 0.312 3.688 5 O -0.375 6.375 6 O -0.269 6.269 7 C 0.068 3.932 8 C -0.237 4.237 9 C -0.189 4.189 10 C -0.237 4.237 11 C 0.283 3.717 12 O -0.421 6.421 13 N -0.129 5.129 14 C -0.483 4.483 15 H 0.108 0.892 16 C -0.133 4.133 17 N -0.515 5.515 18 Si 0.707 3.293 19 H -0.201 1.201 20 H -0.200 1.200 21 H -0.164 1.164 22 C 0.054 3.946 23 C -0.224 4.224 24 C -0.124 4.124 25 C -0.179 4.179 26 C -0.126 4.126 27 C -0.193 4.193 28 H 0.116 0.884 29 H 0.101 0.899 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.169 0.831 42 H 0.158 0.842 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.917 -5.625 9.409 11.129 hybrid contribution -0.513 -0.164 -0.640 0.836 sum 1.404 -5.789 8.769 10.601 Atomic orbital electron populations 1.21645 0.89081 1.02466 1.05484 1.20659 1.00662 1.01562 0.87336 0.84539 1.23040 0.77871 0.82955 0.84963 1.90667 1.34549 1.25311 1.86943 1.86526 1.69980 1.56012 1.14358 1.22549 0.94187 0.92101 0.84403 1.22457 0.94257 1.03076 1.03956 1.21857 1.02725 1.01613 0.92744 1.22452 1.01862 0.95436 1.03943 1.20740 0.80638 0.84906 0.85458 1.90440 1.42122 1.23584 1.85969 1.41398 1.52666 1.16444 1.02405 1.18736 1.08558 0.83999 1.37048 0.89150 1.25661 0.95670 0.97326 0.94684 1.69700 1.23079 1.22141 1.36535 0.86758 0.80143 0.83515 0.78923 1.20137 1.19972 1.16353 1.18639 0.95995 0.91947 0.88069 1.22451 1.04031 0.93690 1.02277 1.21350 0.98727 1.00228 0.92097 1.21343 1.03254 0.95287 0.98034 1.21250 0.98282 0.95078 0.97941 1.21079 1.05507 1.00877 0.91853 0.88374 0.89950 0.93457 0.91696 0.88702 0.92956 0.91068 0.87990 0.91123 0.92930 0.88745 0.91663 0.90608 0.83082 0.84166 0.83185 0.83791 0.86148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.62 8.95 71.98 0.64 -3.97 16 2 C -0.08 -3.12 2.45 -12.29 -0.03 -3.15 16 3 H 0.14 5.03 7.60 -2.39 -0.02 5.01 16 4 C 0.47 17.51 6.56 71.24 0.47 17.97 16 5 O -0.49 -20.71 9.71 29.70 0.29 -20.42 16 6 O -0.35 -10.82 9.69 -51.45 -0.50 -11.32 16 7 C 0.10 2.53 1.13 -10.79 -0.01 2.52 16 8 C -0.18 -4.41 8.37 71.98 0.60 -3.81 16 9 C -0.13 -2.19 8.85 71.98 0.64 -1.56 16 10 C -0.18 -4.39 8.37 71.98 0.60 -3.79 16 11 C 0.49 22.80 6.84 87.66 0.60 23.40 16 12 O -0.54 -27.10 10.74 20.37 0.22 -26.88 16 13 N -0.42 -19.99 2.15 -458.90 -0.99 -20.98 16 14 C -0.36 -17.49 6.31 84.02 0.53 -16.96 16 15 H 0.09 4.67 7.76 -2.91 -0.02 4.65 16 16 C 0.08 3.69 3.64 84.91 0.31 4.00 16 17 N -0.88 -45.15 13.96 21.65 0.30 -44.84 16 18 Si 0.88 40.31 25.72 68.60 1.76 42.08 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.24 -11.38 4.68 99.48 0.47 -10.91 16 22 C 0.15 6.99 3.85 38.22 0.15 7.14 16 23 C -0.20 -9.13 8.80 22.41 0.20 -8.93 16 24 C -0.11 -3.85 10.04 22.25 0.22 -3.62 16 25 C -0.16 -5.25 10.04 22.30 0.22 -5.03 16 26 C -0.11 -3.85 10.04 22.25 0.22 -3.63 16 27 C -0.17 -7.56 6.52 22.41 0.15 -7.41 16 28 H 0.10 2.87 7.99 -2.39 -0.02 2.85 16 29 H 0.08 3.30 5.84 -2.39 -0.01 3.28 16 30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.05 1.66 5.89 -2.39 -0.01 1.65 16 34 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.67 5.89 -2.39 -0.01 1.66 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 41 H 0.15 7.30 4.76 -42.67 -0.20 7.10 16 42 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 43 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 44 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 45 H 0.12 5.64 6.03 -2.91 -0.02 5.62 16 Total: -1.00 -62.44 351.00 7.16 -55.28 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.56 Total: 33.91 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 5.51 Total: -6.83 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.69 Total: -65.83 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: 0.01 Total: -58.61 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.76 Total: 42.08 kcal Total: -62.44 7.16 -55.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415068474.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.691 kcal (2) G-P(sol) polarization free energy of solvation -62.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds