Wall clock time and date at job start Tue Mar 31 2020 12:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47203 * 2 1 4 4 C 1.34221 * 117.00181 * 179.97438 * 3 2 1 5 5 O 1.20831 * 120.00111 * 359.72358 * 4 3 2 6 6 C 1.50704 * 120.00118 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.47115 * 299.72771 * 6 4 3 8 8 C 1.50704 * 109.47115 * 179.72519 * 6 4 3 9 9 O 1.21279 * 119.99687 * 323.14835 * 8 6 4 10 10 N 1.34771 * 119.99940 * 143.14602 * 8 6 4 11 11 C 1.46499 * 119.99947 * 5.63022 * 10 8 6 12 12 C 1.53001 * 109.47013 * 270.78958 * 11 10 8 13 13 C 1.46500 * 120.00322 * 185.62290 * 10 8 6 14 14 C 1.50705 * 109.46932 * 89.99977 * 13 10 8 15 15 H 1.07997 * 119.99480 * 0.02562 * 14 13 10 16 16 C 1.37867 * 119.99697 * 180.02562 * 14 13 10 17 17 N 1.31511 * 120.00569 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99848 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.47403 * 89.99663 * 18 16 14 20 20 H 1.48497 * 109.47200 * 210.00242 * 18 16 14 21 21 H 1.48501 * 109.46940 * 329.99995 * 18 16 14 22 22 C 1.50698 * 109.47030 * 59.72433 * 6 4 3 23 23 C 1.38235 * 119.99861 * 53.29197 * 22 6 4 24 24 C 1.38238 * 119.99848 * 179.80887 * 23 22 6 25 25 C 1.38232 * 120.00002 * 0.39871 * 24 23 22 26 26 C 1.38232 * 119.99932 * 359.85042 * 25 24 23 27 27 C 1.38233 * 120.00359 * 359.96278 * 26 25 24 28 28 H 1.09005 * 109.47025 * 299.99711 * 1 2 3 29 29 H 1.08991 * 109.47100 * 59.99971 * 1 2 3 30 30 H 1.09005 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47051 * 239.99790 * 2 1 3 32 32 H 1.09002 * 109.46714 * 119.99772 * 2 1 3 33 33 H 1.08998 * 109.47621 * 30.79308 * 11 10 8 34 34 H 1.09004 * 109.47319 * 150.79298 * 11 10 8 35 35 H 1.09003 * 109.47232 * 180.02562 * 12 11 10 36 36 H 1.09001 * 109.47410 * 300.01934 * 12 11 10 37 37 H 1.09007 * 109.46700 * 60.02312 * 12 11 10 38 38 H 1.09001 * 109.47317 * 210.00459 * 13 10 8 39 39 H 1.08998 * 109.46957 * 330.00550 * 13 10 8 40 40 H 0.96999 * 120.00141 * 180.02562 * 17 16 14 41 41 H 1.08007 * 120.00315 * 359.97438 * 23 22 6 42 42 H 1.07999 * 119.99732 * 180.23118 * 24 23 22 43 43 H 1.08002 * 120.00345 * 179.83679 * 25 24 23 44 44 H 1.08006 * 119.99991 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00699 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0060 6 6 3.9207 2.9374 0.0000 7 1 3.5891 3.4674 -0.8929 8 6 5.4257 2.8586 0.0076 9 8 5.9841 1.9890 0.6424 10 7 6.1509 3.7542 -0.6911 11 6 5.4848 4.8766 -1.3566 12 6 5.0768 4.4611 -2.7714 13 6 7.6053 3.6057 -0.7849 14 6 7.9479 2.7669 -1.9892 15 1 7.1609 2.3833 -2.6215 16 6 9.2658 2.4893 -2.2835 17 7 10.2241 2.9560 -1.5132 18 14 9.6905 1.4502 -3.7766 19 1 9.8712 2.3316 -4.9581 20 1 10.9482 0.7038 -3.5188 21 1 8.5897 0.4889 -4.0400 22 6 3.4502 3.6761 1.2263 23 6 3.6310 3.1210 2.4794 24 6 3.2029 3.8004 3.6046 25 6 2.5867 5.0311 3.4762 26 6 2.4013 5.5838 2.2229 27 6 2.8328 4.9063 1.0979 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 4.5973 5.1597 -0.7908 34 1 6.1676 5.7246 -1.4097 35 1 4.5816 5.2963 -3.2668 36 1 5.9643 4.1778 -3.3372 37 1 4.3937 3.6133 -2.7183 38 1 8.0654 4.5888 -0.8841 39 1 7.9796 3.1185 0.1154 40 1 11.1514 2.7610 -1.7205 41 1 4.1091 2.1577 2.5795 42 1 3.3476 3.3684 4.5838 43 1 2.2499 5.5607 4.3551 44 1 1.9194 6.5452 2.1225 45 1 2.6876 5.3378 0.1186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416125813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:01 Heat of formation + Delta-G solvation = -94.082280 kcal Electronic energy + Delta-G solvation = -27882.474903 eV Core-core repulsion = 24058.330896 eV Total energy + Delta-G solvation = -3824.144007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.90142 -39.30059 -38.50191 -36.41855 -35.25805 -33.46160 -32.55121 -31.61854 -30.93537 -30.02627 -28.52748 -26.92856 -23.88049 -22.93309 -22.84296 -22.59650 -21.99821 -20.87487 -18.40259 -17.83105 -17.10851 -16.52544 -16.50899 -16.17587 -16.04820 -15.45227 -15.00128 -14.56109 -14.22201 -14.13822 -13.91006 -13.47836 -13.37060 -13.14732 -13.00942 -12.86490 -12.67846 -12.51248 -12.12938 -12.00764 -11.88961 -11.66200 -11.52563 -11.20661 -11.19014 -11.02103 -10.93827 -10.73249 -10.49440 -10.49323 -10.20982 -10.03339 -9.56762 -9.28040 -8.93614 -8.55698 -8.40124 -7.66590 -6.01352 -4.05325 1.22363 1.37896 2.38295 2.52807 3.31872 3.38439 3.40066 3.44995 3.67675 3.99997 4.47361 4.60634 4.68920 4.81455 4.84728 4.90035 4.93864 5.00501 5.11329 5.16415 5.19311 5.33403 5.36201 5.45080 5.56924 5.59959 5.65168 5.70805 5.78439 5.81852 5.87360 6.01018 6.08103 6.26778 6.38729 6.46857 6.49515 6.52704 6.73581 6.93095 7.05461 7.46133 7.55234 7.94102 7.95150 8.25905 8.36060 8.90501 9.05876 9.59282 11.06866 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012586 B = 0.004483 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.083666 B = 6244.508648 C = 7330.200468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.472 3.528 5 O -0.463 6.463 6 C -0.068 4.068 7 H 0.129 0.871 8 C 0.525 3.475 9 O -0.504 6.504 10 N -0.593 5.593 11 C 0.105 3.895 12 C -0.174 4.174 13 C 0.248 3.752 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.070 4.070 23 C -0.098 4.098 24 C -0.117 4.117 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.102 4.102 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.034 0.966 39 H 0.045 0.955 40 H 0.263 0.737 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.133 4.794 4.955 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.346 6.346 6 C -0.090 4.090 7 H 0.146 0.854 8 C 0.308 3.692 9 O -0.378 6.378 10 N -0.325 5.325 11 C -0.019 4.019 12 C -0.232 4.232 13 C 0.129 3.871 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.071 4.071 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.135 4.135 26 C -0.138 4.138 27 C -0.120 4.120 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.369 3.983 5.324 21.427 hybrid contribution 0.358 -0.695 -1.019 1.285 sum -20.011 3.288 4.305 20.732 Atomic orbital electron populations 1.21786 0.92712 1.02768 1.03422 1.23006 0.95154 0.80456 1.02734 1.86477 1.24228 1.32108 1.84645 1.22721 0.80726 0.91482 0.73976 1.90809 1.59847 1.41922 1.41972 1.20243 0.96578 0.91896 1.00314 0.85379 1.19174 0.86113 0.82786 0.81119 1.90728 1.71284 1.34076 1.41732 1.48151 1.10143 1.24873 1.49343 1.21503 0.97209 0.90113 0.93048 1.22306 1.02687 1.00549 0.97692 1.19334 0.71993 0.97404 0.98367 1.21438 0.92095 1.32296 1.10364 0.92313 1.24913 0.96228 0.95940 0.96940 1.69928 0.99905 1.45544 1.38007 0.86536 0.77991 0.80484 0.82678 1.20657 1.21096 1.19890 1.19062 1.00046 0.95388 0.92560 1.21177 0.97981 1.00530 0.91888 1.21113 0.98652 0.95309 0.98388 1.21175 0.99097 0.95719 0.97506 1.21070 1.00462 0.99894 0.92382 1.21011 0.97855 0.93941 0.99209 0.91538 0.91522 0.90376 0.91228 0.91246 0.92021 0.90139 0.92466 0.90227 0.93482 0.94827 0.93685 0.92760 0.85548 0.85862 0.86038 0.85756 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.36 -5.23 10.13 -39.23 -0.40 -5.63 16 4 C 0.47 8.46 6.54 36.01 0.24 8.70 16 5 O -0.46 -10.18 14.60 -26.27 -0.38 -10.56 16 6 C -0.07 -1.14 2.04 -94.07 -0.19 -1.33 16 7 H 0.13 1.81 4.96 -51.93 -0.26 1.56 16 8 C 0.52 11.48 6.23 -10.99 -0.07 11.41 16 9 O -0.50 -13.35 14.64 -17.08 -0.25 -13.60 16 10 N -0.59 -12.74 2.46 -175.06 -0.43 -13.17 16 11 C 0.11 1.68 5.74 -4.04 -0.02 1.66 16 12 C -0.17 -2.61 10.01 37.16 0.37 -2.24 16 13 C 0.25 6.53 5.25 -5.19 -0.03 6.50 16 14 C -0.52 -14.88 8.96 -34.44 -0.31 -15.19 16 15 H 0.06 1.67 7.41 -52.49 -0.39 1.28 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 18 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.07 -1.03 4.61 -104.62 -0.48 -1.51 16 23 C -0.10 -1.48 8.96 -39.58 -0.35 -1.83 16 24 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 26 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 27 C -0.10 -1.19 8.84 -39.58 -0.35 -1.54 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 33 H 0.06 0.79 5.03 -51.93 -0.26 0.53 16 34 H 0.08 1.24 7.88 -51.93 -0.41 0.83 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.43 7.30 -51.93 -0.38 1.05 16 37 H 0.05 0.69 6.99 -51.92 -0.36 0.33 16 38 H 0.03 0.89 7.89 -51.93 -0.41 0.48 16 39 H 0.05 1.35 7.35 -51.93 -0.38 0.97 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.13 2.16 7.79 -52.48 -0.41 1.75 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.13 1.17 7.27 -52.49 -0.38 0.79 16 LS Contribution 376.43 15.07 5.67 5.67 Total: -1.00 -35.79 376.43 -8.53 -44.32 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -6.58 Total: 0.50 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.88 Total: 1.35 kcal Atomic # 7 Polarization: -39.56 SS G_CDS: 0.31 Total: -39.25 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.03 Total: -29.79 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.79 -8.53 -44.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416125813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.758 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds