Wall clock time and date at job start Tue Mar 31 2020 12:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45194 * 109.47148 * 2 1 4 4 C 1.34235 * 117.00299 * 175.04554 * 3 2 1 5 5 O 1.20828 * 119.99408 * 5.11891 * 4 3 2 6 6 C 1.50692 * 120.00231 * 185.12390 * 4 3 2 7 7 H 1.09007 * 109.46777 * 296.15073 * 6 4 3 8 8 C 1.50695 * 109.47403 * 56.15111 * 6 4 3 9 9 O 1.21283 * 120.00305 * 33.76200 * 8 6 4 10 10 N 1.34783 * 120.00007 * 213.76220 * 8 6 4 11 11 C 1.46500 * 119.99887 * 4.11816 * 10 8 6 12 12 C 1.52995 * 109.46745 * 93.76780 * 11 10 8 13 13 C 1.46501 * 119.99912 * 184.12150 * 10 8 6 14 14 C 1.50693 * 109.47029 * 89.99911 * 13 10 8 15 15 H 1.08000 * 120.00684 * 359.97438 * 14 13 10 16 16 C 1.37886 * 119.99835 * 179.97438 * 14 13 10 17 17 N 1.31519 * 119.99813 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 119.99893 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47122 * 89.99852 * 18 16 14 20 20 H 1.48495 * 109.47019 * 209.99976 * 18 16 14 21 21 H 1.48497 * 109.46904 * 330.00036 * 18 16 14 22 22 C 1.50699 * 109.47016 * 176.15377 * 6 4 3 23 23 C 1.38234 * 120.00112 * 119.99815 * 22 6 4 24 24 C 1.38236 * 120.00160 * 179.97438 * 23 22 6 25 25 C 1.38230 * 119.99862 * 359.95642 * 24 23 22 26 26 C 1.38228 * 120.00195 * 359.97438 * 25 24 23 27 27 C 1.38235 * 120.00163 * 0.07218 * 26 25 24 28 28 H 1.08992 * 109.47378 * 64.98466 * 1 2 3 29 29 H 1.08998 * 109.46928 * 184.98835 * 1 2 3 30 30 H 1.09004 * 109.46620 * 304.98449 * 1 2 3 31 31 H 1.09003 * 109.46693 * 240.00048 * 2 1 3 32 32 H 1.09001 * 109.47134 * 119.99881 * 2 1 3 33 33 H 1.08995 * 109.46851 * 213.76392 * 11 10 8 34 34 H 1.08997 * 109.47476 * 333.76792 * 11 10 8 35 35 H 1.08997 * 109.47958 * 65.00235 * 12 11 10 36 36 H 1.09004 * 109.47523 * 185.00479 * 12 11 10 37 37 H 1.08999 * 109.47656 * 305.00115 * 12 11 10 38 38 H 1.08996 * 109.47050 * 209.99793 * 13 10 8 39 39 H 1.09002 * 109.46668 * 330.00077 * 13 10 8 40 40 H 0.96998 * 119.99447 * 179.97438 * 17 16 14 41 41 H 1.08008 * 120.00226 * 359.97438 * 23 22 6 42 42 H 1.08003 * 119.99704 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00215 * 179.72101 * 25 24 23 44 44 H 1.07998 * 120.00350 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.00400 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3406 1.5463 0.1033 5 8 4.0800 0.5908 0.0976 6 6 3.9074 2.9371 0.2264 7 1 3.6897 3.4999 -0.6814 8 6 3.2832 3.6311 1.4095 9 8 2.9810 2.9941 2.3962 10 7 3.0607 4.9599 1.3710 11 6 3.3417 5.7145 0.1471 12 6 2.0665 5.8186 -0.6919 13 6 2.5380 5.6496 2.5531 14 6 3.6859 6.1213 3.4080 15 1 4.7031 5.9265 3.1017 16 6 3.4375 6.8017 4.5813 17 7 4.4393 7.2129 5.3276 18 14 1.6782 7.1381 5.1114 19 1 1.1906 6.0142 5.9507 20 1 1.6298 8.3985 5.8951 21 1 0.8156 7.2689 3.9097 22 6 5.3995 2.8559 0.4214 23 6 6.2494 3.4514 -0.4918 24 6 7.6181 3.3774 -0.3126 25 6 8.1369 2.7087 0.7803 26 6 7.2871 2.1144 1.6943 27 6 5.9184 2.1876 1.5146 28 1 -0.3634 0.4345 -0.9312 29 1 -0.3633 -1.0238 0.0894 30 1 -0.3633 0.5893 0.8420 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.6874 6.7146 0.4082 34 1 4.1134 5.2016 -0.4269 35 1 1.3245 6.4082 -0.1536 36 1 2.2950 6.3017 -1.6419 37 1 1.6715 4.8199 -0.8780 38 1 1.9422 6.5069 2.2397 39 1 1.9147 4.9643 3.1275 40 1 4.2645 7.6918 6.1528 41 1 5.8441 3.9746 -1.3454 42 1 8.2820 3.8424 -1.0264 43 1 9.2063 2.6470 0.9179 44 1 7.6924 1.5916 2.5479 45 1 5.2544 1.7229 2.2285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416125814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:04 Heat of formation + Delta-G solvation = -91.326949 kcal Electronic energy + Delta-G solvation = -28002.001742 eV Core-core repulsion = 24177.977215 eV Total energy + Delta-G solvation = -3824.024527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.96555 -39.31826 -38.49904 -36.54419 -35.54859 -33.30220 -32.49963 -31.68642 -30.71682 -30.39876 -28.68000 -27.34039 -23.73168 -23.08708 -22.72997 -22.45938 -21.94544 -20.60706 -18.81781 -17.48243 -17.18750 -16.98302 -16.81091 -16.27429 -16.04978 -15.43126 -14.98707 -14.48464 -14.38305 -14.03994 -13.81386 -13.55478 -13.32376 -13.23614 -13.06024 -12.85843 -12.57775 -12.44126 -12.40640 -12.20397 -11.94802 -11.80018 -11.62766 -11.47042 -11.15321 -10.96694 -10.91247 -10.77443 -10.55538 -10.51779 -10.34903 -10.17883 -9.58521 -9.34447 -8.69229 -8.59949 -8.52756 -7.82008 -6.09554 -4.08669 1.39738 1.62956 2.17215 2.71906 3.09927 3.27944 3.33857 3.35987 3.67205 4.02436 4.38327 4.61295 4.73391 4.81441 4.84894 4.88318 4.95077 5.15125 5.17368 5.19857 5.22613 5.23915 5.32124 5.48798 5.58647 5.63431 5.66233 5.70204 5.79431 5.89738 5.91790 6.08223 6.12161 6.22349 6.37830 6.45663 6.57504 6.64311 6.69745 6.73855 6.90756 7.15568 7.23803 7.58249 7.79347 8.09114 8.43865 8.75667 8.95099 9.50093 11.03651 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.005545 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.062575 B = 5048.454778 C = 6564.234477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.064 3.936 3 O -0.350 6.350 4 C 0.491 3.509 5 O -0.494 6.494 6 C -0.067 4.067 7 H 0.130 0.870 8 C 0.531 3.469 9 O -0.528 6.528 10 N -0.581 5.581 11 C 0.099 3.901 12 C -0.172 4.172 13 C 0.217 3.783 14 C -0.530 4.530 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.895 5.895 18 Si 0.874 3.126 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.072 4.072 23 C -0.103 4.103 24 C -0.125 4.125 25 C -0.111 4.111 26 C -0.119 4.119 27 C -0.070 4.070 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.264 0.736 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.621 -8.844 -15.918 18.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.267 6.267 4 C 0.332 3.668 5 O -0.380 6.380 6 C -0.089 4.089 7 H 0.148 0.852 8 C 0.316 3.684 9 O -0.405 6.405 10 N -0.312 5.312 11 C -0.025 4.025 12 C -0.231 4.231 13 C 0.097 3.903 14 C -0.568 4.568 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.534 5.534 18 Si 0.701 3.299 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.073 4.073 23 C -0.121 4.121 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.137 4.137 27 C -0.088 4.088 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.074 0.926 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.564 -9.377 -15.214 17.941 hybrid contribution -0.764 0.235 0.403 0.895 sum -2.328 -9.143 -14.812 17.561 Atomic orbital electron populations 1.21803 0.92652 1.02853 1.03633 1.23016 0.95393 0.80093 1.02477 1.86496 1.24357 1.32461 1.83414 1.22669 0.80729 0.91195 0.72165 1.90655 1.59977 1.42386 1.45023 1.20198 0.94115 0.92235 1.02391 0.85191 1.19341 0.79177 0.82864 0.87035 1.90703 1.51580 1.64747 1.33447 1.47844 1.63155 1.06065 1.14136 1.21582 0.96626 0.98550 0.85698 1.22260 0.98894 1.02192 0.99730 1.19710 0.95623 0.92046 0.82972 1.21315 0.93823 1.35984 1.05690 0.90601 1.24839 0.96947 0.95127 0.95941 1.69899 1.30814 1.38623 1.14043 0.86886 0.85519 0.78116 0.79401 1.19913 1.21049 1.19014 1.18816 0.90581 1.00911 0.96988 1.20897 0.93555 0.99325 0.98351 1.20990 0.94726 1.00198 0.98382 1.21159 0.99633 0.97533 0.94629 1.21108 0.93179 1.00052 0.99319 1.21062 0.95662 0.96021 0.96046 0.91648 0.90343 0.91096 0.91362 0.91084 0.89287 0.91276 0.91930 0.91768 0.92629 0.94923 0.94357 0.92559 0.85957 0.85902 0.86097 0.85891 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.79 6.21 37.16 0.23 1.02 16 3 O -0.35 -5.52 10.07 -39.27 -0.40 -5.92 16 4 C 0.49 8.38 6.63 36.00 0.24 8.62 16 5 O -0.49 -9.06 14.99 -18.75 -0.28 -9.35 16 6 C -0.07 -1.11 2.06 -94.08 -0.19 -1.30 16 7 H 0.13 1.69 5.84 -51.92 -0.30 1.39 16 8 C 0.53 10.95 6.20 -10.99 -0.07 10.88 16 9 O -0.53 -12.95 15.52 5.55 0.09 -12.86 16 10 N -0.58 -11.78 2.46 -175.07 -0.43 -12.21 16 11 C 0.10 1.50 5.77 -4.04 -0.02 1.48 16 12 C -0.17 -2.10 10.18 37.16 0.38 -1.72 16 13 C 0.22 5.21 4.28 -5.20 -0.02 5.19 16 14 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 15 H 0.08 2.38 8.06 -52.49 -0.42 1.95 16 16 C 0.07 2.14 5.47 -17.81 -0.10 2.04 16 17 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 18 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 19 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 22 C -0.07 -1.21 4.30 -104.62 -0.45 -1.66 16 23 C -0.10 -1.43 9.18 -39.58 -0.36 -1.79 16 24 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 25 C -0.11 -1.51 10.05 -39.59 -0.40 -1.91 16 26 C -0.12 -1.85 10.05 -39.59 -0.40 -2.25 16 27 C -0.07 -1.27 8.10 -39.58 -0.32 -1.59 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.09 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.07 0.89 5.25 -51.93 -0.27 0.61 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 39 H 0.04 0.99 6.80 -51.93 -0.35 0.64 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.12 1.29 7.69 -52.48 -0.40 0.89 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 44 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.13 2.50 7.61 -52.49 -0.40 2.11 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -35.34 378.03 -7.82 -43.16 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -6.76 Total: 2.86 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.84 Total: -1.43 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.34 Total: -38.87 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.59 Total: -28.12 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.34 -7.82 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416125814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.163 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds