Wall clock time and date at job start Tue Mar 31 2020 12:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.46846 * 2 1 4 4 C 1.42900 * 113.99799 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47367 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.58810 * 183.41083 * 5 4 3 7 7 C 1.53195 * 109.70091 * 63.05444 * 5 4 3 8 8 C 1.53042 * 109.31105 * 185.51204 * 7 5 4 9 9 C 1.53038 * 109.54052 * 61.36354 * 8 7 5 10 10 C 1.53626 * 109.24325 * 298.51308 * 9 8 7 11 11 N 1.46922 * 108.54312 * 54.85582 * 10 9 8 12 12 S 1.65599 * 120.63350 * 126.37122 * 11 10 9 13 13 O 1.42092 * 104.28064 * 156.17848 * 12 11 10 14 14 O 1.42096 * 104.27693 * 28.31444 * 12 11 10 15 15 C 1.81399 * 104.44745 * 272.24982 * 12 11 10 16 16 C 1.53005 * 109.47363 * 174.59092 * 15 12 11 17 17 C 1.52990 * 109.47260 * 179.97438 * 16 15 12 18 18 C 1.50703 * 109.47219 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99632 * 0.02562 * 18 17 16 20 20 C 1.37879 * 120.00330 * 179.97438 * 18 17 16 21 21 N 1.31514 * 119.99993 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00145 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47529 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.47155 * 300.00256 * 22 20 18 25 25 H 1.48503 * 109.47078 * 60.00216 * 22 20 18 26 26 H 1.09003 * 109.47111 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47293 * 300.00176 * 1 2 3 28 28 H 1.09001 * 109.47298 * 60.00274 * 1 2 3 29 29 H 1.09003 * 109.47293 * 239.99824 * 2 1 3 30 30 H 1.09001 * 109.47298 * 119.99726 * 2 1 3 31 31 H 1.09002 * 109.47484 * 59.99832 * 4 3 2 32 32 H 1.09002 * 109.47361 * 299.99596 * 4 3 2 33 33 H 1.08995 * 109.49857 * 305.45797 * 7 5 4 34 34 H 1.08995 * 109.49694 * 65.52525 * 7 5 4 35 35 H 1.09004 * 109.46002 * 181.38381 * 8 7 5 36 36 H 1.09001 * 109.46052 * 301.35514 * 8 7 5 37 37 H 1.09005 * 109.49775 * 58.58758 * 9 8 7 38 38 H 1.08998 * 109.49738 * 178.64980 * 9 8 7 39 39 H 1.08995 * 109.73758 * 295.11697 * 10 9 8 40 40 H 1.09001 * 109.66399 * 174.54607 * 10 9 8 41 41 H 1.08994 * 109.47561 * 54.58445 * 15 12 11 42 42 H 1.09008 * 109.47240 * 294.58558 * 15 12 11 43 43 H 1.08994 * 109.47311 * 59.99199 * 16 15 12 44 44 H 1.09008 * 109.46506 * 299.99915 * 16 15 12 45 45 H 1.09002 * 109.47232 * 59.99793 * 17 16 15 46 46 H 1.08999 * 109.47607 * 299.99822 * 17 16 15 47 47 H 0.97002 * 119.99598 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8253 2.9384 -0.0012 6 1 4.9099 3.0271 -0.0627 7 6 3.3275 3.6063 1.2845 8 6 3.6046 5.1098 1.2138 9 6 2.8463 5.7149 0.0303 10 6 3.3433 5.0703 -1.2725 11 7 3.2098 3.6120 -1.1529 12 16 2.3873 2.7432 -2.2978 13 8 2.9219 1.4309 -2.1929 14 8 2.5381 3.5027 -3.4893 15 6 0.6624 2.7746 -1.7371 16 6 -0.2284 2.1128 -2.7904 17 6 -1.6831 2.1387 -2.3172 18 6 -2.5606 1.4875 -3.3549 19 1 -2.1243 1.0941 -4.2611 20 6 -3.9204 1.3929 -3.1470 21 7 -4.4516 1.8716 -2.0432 22 14 -5.0080 0.5851 -4.4330 23 1 -6.4199 0.6103 -3.9738 24 1 -4.8917 1.3251 -5.7152 25 1 -4.5769 -0.8219 -4.6326 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8332 0.9767 -0.8908 32 1 3.8340 0.9765 0.8892 33 1 2.2558 3.4386 1.3902 34 1 3.8488 3.1797 2.1414 35 1 3.2736 5.5839 2.1379 36 1 4.6739 5.2762 1.0831 37 1 1.7789 5.5273 0.1478 38 1 3.0249 6.7896 -0.0051 39 1 4.3894 5.3293 -1.4356 40 1 2.7421 5.4247 -2.1098 41 1 0.3465 3.8075 -1.5910 42 1 0.5765 2.2318 -0.7957 43 1 0.0875 1.0799 -2.9364 44 1 -0.1424 2.6556 -3.7318 45 1 -1.9992 3.1716 -2.1709 46 1 -1.7688 1.5958 -1.3759 47 1 -3.8869 2.2914 -1.3756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416550454.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:47 Heat of formation + Delta-G solvation = -140.199210 kcal Electronic energy + Delta-G solvation = -27818.323358 eV Core-core repulsion = 24127.623522 eV Total energy + Delta-G solvation = -3690.699836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.38368 -38.82062 -37.79271 -37.01177 -36.76230 -34.28315 -33.52536 -33.07694 -31.47910 -29.24138 -27.40448 -25.42651 -24.96308 -23.78044 -23.14325 -22.59769 -21.25493 -19.93463 -19.09984 -18.62356 -17.98469 -17.32329 -17.11484 -16.53308 -16.19923 -15.71742 -15.67441 -15.54961 -15.45298 -15.16128 -14.99522 -14.78101 -14.37468 -13.90700 -13.79441 -13.56642 -13.25386 -13.13143 -13.05580 -12.93473 -12.89895 -12.79852 -12.57001 -12.46269 -12.21397 -12.10879 -11.99989 -11.94253 -11.74743 -11.60901 -11.45852 -11.33773 -11.09001 -10.64077 -10.53326 -10.14085 -9.85829 -8.68989 -6.39316 -0.64859 1.51923 1.59892 1.68282 1.79503 2.55453 2.68449 2.82327 3.15488 3.22602 3.44929 3.75508 3.86709 3.97642 4.01339 4.18383 4.22836 4.24086 4.28668 4.33439 4.42796 4.46047 4.55365 4.59730 4.61401 4.73484 4.81487 4.83907 4.91479 4.95455 5.04396 5.07117 5.11787 5.16313 5.22079 5.27118 5.28375 5.37746 5.39079 5.51044 5.55526 5.71183 5.97852 6.17932 6.25509 6.57285 7.41164 8.71965 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017644 B = 0.004182 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.586303 B = 6694.132986 C = 7000.231923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 O -0.413 6.413 4 C 0.003 3.997 5 C 0.161 3.839 6 H 0.113 0.887 7 C -0.128 4.128 8 C -0.113 4.113 9 C -0.137 4.137 10 C 0.113 3.887 11 N -0.990 5.990 12 S 2.624 3.376 13 O -0.964 6.964 14 O -1.009 7.009 15 C -0.618 4.618 16 C -0.089 4.089 17 C 0.021 3.979 18 C -0.625 4.625 19 H 0.048 0.952 20 C -0.034 4.034 21 N -0.934 5.934 22 Si 1.114 2.886 23 H -0.281 1.281 24 H -0.272 1.272 25 H -0.268 1.268 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.052 0.948 45 H -0.011 1.011 46 H 0.013 0.987 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.674 3.465 9.818 23.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.008 4.008 3 O -0.334 6.334 4 C -0.074 4.074 5 C 0.056 3.944 6 H 0.131 0.869 7 C -0.167 4.167 8 C -0.150 4.150 9 C -0.176 4.176 10 C -0.012 4.012 11 N -0.829 5.829 12 S 2.723 3.277 13 O -0.954 6.954 14 O -0.999 6.999 15 C -0.748 4.748 16 C -0.128 4.128 17 C -0.017 4.017 18 C -0.663 4.663 19 H 0.066 0.934 20 C -0.232 4.232 21 N -0.571 5.571 22 Si 0.935 3.065 23 H -0.206 1.206 24 H -0.197 1.197 25 H -0.193 1.193 26 H 0.098 0.902 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.139 0.861 42 H 0.184 0.816 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.007 0.993 46 H 0.031 0.969 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.419 2.837 8.677 21.458 hybrid contribution 0.763 0.557 0.769 1.219 sum 20.183 3.394 9.446 22.541 Atomic orbital electron populations 1.22133 0.94974 1.03193 1.02957 1.22407 0.94013 0.83032 1.01311 1.87594 1.22119 1.28148 1.95553 1.23885 0.82114 0.96555 1.04890 1.21373 0.98437 0.89277 0.85301 0.86896 1.21948 1.02107 0.96226 0.96408 1.21468 1.01022 0.94590 0.97943 1.22042 1.00193 1.00898 0.94462 1.21713 1.03217 0.77518 0.98729 1.57544 1.68480 1.16995 1.39897 1.04461 0.76743 0.73646 0.72826 1.93421 1.76189 1.40113 1.85715 1.93474 1.86457 1.73008 1.46958 1.30938 1.21858 1.10103 1.11855 1.21093 0.96502 0.99300 0.95953 1.19121 0.91471 0.94896 0.96261 1.22519 0.95397 1.42053 1.06309 0.93394 1.27341 0.98508 0.96132 1.01171 1.70917 1.39187 1.37946 1.09100 0.82985 0.74301 0.76322 0.72924 1.20644 1.19712 1.19320 0.90200 0.92081 0.92567 0.92935 0.90985 0.86970 0.89890 0.92298 0.89003 0.90865 0.90310 0.92746 0.88980 0.89035 0.90722 0.86137 0.81611 0.91986 0.92935 0.99296 0.96926 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.40 9.50 71.98 0.68 -4.72 16 2 C 0.07 1.78 6.33 71.98 0.46 2.24 16 3 O -0.41 -10.81 4.60 -126.60 -0.58 -11.39 16 4 C 0.00 0.06 4.61 71.98 0.33 0.40 16 5 C 0.16 2.93 3.26 44.98 0.15 3.08 16 6 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 7 C -0.13 -1.96 5.32 30.67 0.16 -1.79 16 8 C -0.11 -1.45 5.88 30.62 0.18 -1.27 16 9 C -0.14 -2.18 6.10 30.82 0.19 -1.99 16 10 C 0.11 2.23 6.33 86.51 0.55 2.78 16 11 N -0.99 -23.28 3.18 -489.98 -1.56 -24.84 16 12 S 2.62 84.70 4.66 -56.49 -0.26 84.43 16 13 O -0.96 -32.00 11.69 -118.74 -1.39 -33.39 16 14 O -1.01 -39.10 16.81 -127.65 -2.15 -41.25 16 15 C -0.62 -21.81 5.57 71.98 0.40 -21.41 16 16 C -0.09 -3.93 4.27 30.59 0.13 -3.80 16 17 C 0.02 1.08 4.07 29.85 0.12 1.20 16 18 C -0.62 -36.50 9.11 25.60 0.23 -36.27 16 19 H 0.05 2.75 7.74 -2.91 -0.02 2.73 16 20 C -0.03 -1.97 5.46 84.66 0.46 -1.51 16 21 N -0.93 -58.05 13.65 21.45 0.29 -57.76 16 22 Si 1.11 51.00 29.90 68.60 2.05 53.05 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.06 2.11 3.38 -2.39 -0.01 2.10 16 29 H 0.05 1.47 7.70 -2.39 -0.02 1.45 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 2.78 5.23 -55.55 -0.29 2.49 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.17 7.64 -2.39 -0.02 1.15 16 34 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.69 7.17 -2.39 -0.02 1.67 16 41 H 0.12 4.00 8.14 -2.39 -0.02 3.99 16 42 H 0.17 5.64 3.34 -2.39 -0.01 5.63 16 43 H 0.06 2.67 7.76 -2.39 -0.02 2.65 16 44 H 0.05 2.35 8.14 -2.38 -0.02 2.33 16 45 H -0.01 -0.63 8.01 -2.39 -0.02 -0.65 16 46 H 0.01 0.67 6.29 -2.39 -0.02 0.66 16 47 H 0.26 16.05 7.22 -92.71 -0.67 15.38 16 Total: -1.00 -73.23 358.95 1.21 -72.02 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.76 Total: 22.19 kcal Atomic # 6 Polarization: -67.11 SS G_CDS: 4.04 Total: -63.07 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -1.27 Total: -82.60 kcal Atomic # 8 Polarization: -81.91 SS G_CDS: -4.12 Total: -86.03 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.05 Total: 53.05 kcal Atomic # 16 Polarization: 84.70 SS G_CDS: -0.26 Total: 84.43 kcal Total: -73.23 1.21 -72.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416550454.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.184 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds