Wall clock time and date at job start Tue Mar 31 2020 12:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20760 * 120.00434 * 2 1 4 4 C 1.50706 * 120.00173 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47326 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47128 * 180.02562 * 5 4 2 7 7 C 1.38257 * 119.94719 * 89.99771 * 6 5 4 8 8 C 1.38142 * 120.05967 * 179.97438 * 7 6 5 9 9 C 1.38737 * 119.93930 * 0.02562 * 8 7 6 10 10 O 1.35904 * 120.05288 * 179.97438 * 9 8 7 11 11 C 1.42895 * 116.99923 * 185.35628 * 10 9 8 12 12 H 1.09003 * 109.46873 * 35.32221 * 11 10 9 13 13 C 1.53005 * 109.47275 * 275.32599 * 11 10 9 14 14 C 1.50700 * 109.47500 * 155.32516 * 11 10 9 15 15 O 1.21285 * 119.99575 * 5.00183 * 14 11 10 16 16 N 1.34771 * 120.00415 * 185.00464 * 14 11 10 17 17 C 1.46497 * 120.00040 * 180.02562 * 16 14 11 18 18 C 1.50699 * 109.47041 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00286 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00013 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00145 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47502 * 90.00002 * 22 20 18 24 24 H 1.48505 * 109.46989 * 210.00132 * 22 20 18 25 25 H 1.48498 * 109.47018 * 329.99724 * 22 20 18 26 26 C 1.38728 * 119.88835 * 0.26896 * 9 8 7 27 27 C 1.38143 * 119.94523 * 359.43276 * 26 9 8 28 28 H 1.09003 * 109.47087 * 239.99775 * 1 2 3 29 29 H 1.08998 * 109.46759 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47088 * 119.99840 * 1 2 3 31 31 H 1.09002 * 109.46679 * 60.00068 * 4 2 1 32 32 H 1.09000 * 109.46893 * 300.00127 * 4 2 1 33 33 H 1.09000 * 109.47254 * 59.99537 * 5 4 2 34 34 H 1.09005 * 109.46684 * 299.99743 * 5 4 2 35 35 H 1.08005 * 119.96914 * 359.97438 * 7 6 5 36 36 H 1.07992 * 120.03101 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.47225 * 300.00143 * 13 11 10 38 38 H 1.09005 * 109.46818 * 59.99972 * 13 11 10 39 39 H 1.08999 * 109.47322 * 179.97438 * 13 11 10 40 40 H 0.97003 * 119.99894 * 359.97438 * 16 14 11 41 41 H 1.08992 * 109.47312 * 299.99795 * 17 16 14 42 42 H 1.09004 * 109.47460 * 59.99612 * 17 16 14 43 43 H 0.97002 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.02692 * 179.72421 * 26 9 8 45 45 H 1.07999 * 119.97464 * 180.27127 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0256 0.0002 6 6 4.5183 -2.3307 -0.0010 7 6 4.8637 -2.9271 -1.1996 8 6 5.5549 -4.1232 -1.2034 9 6 5.9019 -4.7262 -0.0031 10 8 6.5814 -5.9031 -0.0042 11 6 6.8025 -6.5257 1.2629 12 1 5.9419 -6.3509 1.9087 13 6 8.0552 -5.9327 1.9110 14 6 6.9915 -8.0081 1.0681 15 8 7.0325 -8.4722 -0.0517 16 7 7.1150 -8.8181 2.1382 17 6 7.2993 -10.2590 1.9488 18 6 7.4103 -10.9321 3.2925 19 1 7.3500 -10.3453 4.1971 20 6 7.5888 -12.2973 3.3670 21 7 7.6861 -12.8847 4.5397 22 14 7.6938 -13.3123 1.8024 23 1 9.1098 -13.4011 1.3640 24 1 7.1693 -14.6772 2.0617 25 1 6.8856 -12.6655 0.7377 26 6 5.5488 -4.1288 1.1981 27 6 4.8630 -2.9296 1.1966 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.9972 -1.8763 -0.8909 32 1 1.9972 -1.8771 0.8891 33 1 4.0278 -0.4545 0.8906 34 1 4.0284 -0.4534 -0.8894 35 1 4.5929 -2.4574 -2.1337 36 1 5.8241 -4.5888 -2.1398 37 1 8.9158 -6.1074 1.2652 38 1 7.9185 -4.8605 2.0519 39 1 8.2236 -6.4072 2.8776 40 1 7.0826 -8.4468 3.0338 41 1 6.4456 -10.6664 1.4073 42 1 8.2104 -10.4368 1.3774 43 1 7.8113 -13.8452 4.5921 44 1 5.8139 -4.5985 2.1338 45 1 4.5917 -2.4619 2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427647283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:59 Heat of formation + Delta-G solvation = -100.805839 kcal Electronic energy + Delta-G solvation = -25298.198588 eV Core-core repulsion = 21473.763025 eV Total energy + Delta-G solvation = -3824.435562 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65090 -39.91749 -39.03716 -37.59990 -34.42710 -33.94576 -32.67971 -31.90601 -31.09139 -30.86380 -28.75961 -27.93812 -25.06715 -24.09119 -23.19942 -21.99512 -21.07854 -19.95286 -19.89085 -18.39634 -17.64820 -16.56792 -16.47445 -16.07015 -15.67723 -15.53107 -15.48210 -15.19290 -14.98345 -14.45081 -14.41487 -14.13006 -13.84500 -13.50941 -13.24953 -13.16518 -13.00114 -12.75692 -12.56064 -12.53523 -12.43488 -12.31757 -12.05059 -11.78357 -11.59668 -11.43733 -11.09583 -11.02876 -10.83862 -10.80122 -10.07047 -10.01868 -9.56593 -9.28692 -9.16942 -8.83924 -8.28341 -8.18782 -6.26780 -4.29807 1.15550 1.22569 1.53948 2.82372 3.01795 3.23678 3.30746 3.38676 3.48549 3.69636 3.97786 4.28921 4.48101 4.53001 4.59978 4.66177 4.72710 4.75482 4.81788 4.90896 4.92194 5.06708 5.07990 5.08878 5.14666 5.21572 5.24376 5.35618 5.54869 5.55288 5.57957 5.60642 5.74824 5.85887 5.99654 6.11788 6.20476 6.41638 6.58990 6.71873 6.99043 7.07089 7.08260 7.29584 7.33104 8.03358 8.39123 8.66431 8.78399 9.32594 10.84901 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.001965 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.334042 B =14243.946646 C =14511.615117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.353 3.647 3 O -0.460 6.460 4 C -0.169 4.169 5 C -0.065 4.065 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.149 4.149 9 C 0.135 3.865 10 O -0.283 6.283 11 C 0.066 3.934 12 H 0.096 0.904 13 C -0.175 4.175 14 C 0.505 3.495 15 O -0.534 6.534 16 N -0.699 5.699 17 C 0.222 3.778 18 C -0.546 4.546 19 H 0.080 0.920 20 C 0.079 3.921 21 N -0.891 5.891 22 Si 0.876 3.124 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.261 1.261 26 C -0.210 4.210 27 C -0.074 4.074 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.397 0.603 41 H 0.027 0.973 42 H 0.023 0.977 43 H 0.268 0.732 44 H 0.132 0.868 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 24.827 -6.944 28.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.229 3.771 3 O -0.334 6.334 4 C -0.206 4.206 5 C -0.102 4.102 6 C -0.130 4.130 7 C -0.094 4.094 8 C -0.167 4.167 9 C 0.089 3.911 10 O -0.196 6.196 11 C 0.006 3.994 12 H 0.113 0.887 13 C -0.233 4.233 14 C 0.288 3.712 15 O -0.411 6.411 16 N -0.349 5.349 17 C 0.100 3.900 18 C -0.584 4.584 19 H 0.098 0.902 20 C -0.125 4.125 21 N -0.527 5.527 22 Si 0.702 3.298 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.185 1.185 26 C -0.229 4.229 27 C -0.093 4.093 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.231 0.769 41 H 0.045 0.955 42 H 0.041 0.959 43 H 0.078 0.922 44 H 0.149 0.851 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.557 24.712 -7.814 27.986 hybrid contribution -0.035 -0.657 0.056 0.660 sum -10.592 24.055 -7.758 27.405 Atomic orbital electron populations 1.22342 0.94497 1.04926 1.04673 1.24711 0.92024 0.90355 0.70039 1.90424 1.72050 1.35249 1.35634 1.22181 0.95965 0.97270 1.05215 1.20290 0.92175 0.93889 1.03851 1.19689 1.02445 0.97719 0.93172 1.20814 0.96784 0.94138 0.97680 1.20462 1.02811 0.96898 0.96564 1.19149 0.91842 0.85902 0.94240 1.86238 1.69869 1.32871 1.30577 1.22304 1.00001 0.92177 0.84930 0.88674 1.22326 0.97316 1.01774 1.01834 1.19952 0.78447 0.86935 0.85868 1.90696 1.50028 1.76519 1.23904 1.46080 1.71514 1.09613 1.07707 1.19548 0.96690 0.75482 0.98292 1.21053 1.52620 0.93299 0.91378 0.90159 1.24784 0.93827 0.97526 0.96400 1.69874 1.48415 1.10857 1.23602 0.86826 0.79351 0.79783 0.83803 1.19778 1.20820 1.18482 1.21338 1.05611 0.98569 0.97351 1.20802 0.96558 0.94281 0.97613 0.88902 0.90116 0.88914 0.88135 0.88150 0.90650 0.90645 0.85534 0.85026 0.90659 0.90995 0.89860 0.76894 0.95489 0.95917 0.92181 0.85056 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.75 10.26 36.00 0.37 -0.38 16 2 C 0.35 2.26 7.27 -29.03 -0.21 2.04 16 3 O -0.46 -4.76 16.71 6.00 0.10 -4.66 16 4 C -0.17 -0.91 5.62 -27.88 -0.16 -1.06 16 5 C -0.06 -0.47 4.63 -27.88 -0.13 -0.60 16 6 C -0.13 -1.13 5.13 -104.60 -0.54 -1.67 16 7 C -0.08 -0.70 9.69 -39.61 -0.38 -1.09 16 8 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 9 C 0.13 1.73 6.60 -39.22 -0.26 1.48 16 10 O -0.28 -4.43 9.34 -39.30 -0.37 -4.80 16 11 C 0.07 0.94 2.64 -27.88 -0.07 0.86 16 12 H 0.10 1.12 6.31 -51.93 -0.33 0.79 16 13 C -0.17 -2.01 9.12 37.16 0.34 -1.68 16 14 C 0.51 9.66 7.18 -10.99 -0.08 9.58 16 15 O -0.53 -12.59 16.51 -14.31 -0.24 -12.83 16 16 N -0.70 -13.65 5.51 -61.48 -0.34 -13.99 16 17 C 0.22 5.33 4.50 -5.20 -0.02 5.31 16 18 C -0.55 -14.59 9.83 -34.44 -0.34 -14.93 16 19 H 0.08 2.21 7.84 -52.49 -0.41 1.80 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 21 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 22 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 23 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 26 C -0.21 -2.23 8.24 -39.44 -0.32 -2.56 16 27 C -0.07 -0.68 9.69 -39.61 -0.38 -1.06 16 28 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.58 8.04 -51.93 -0.42 0.16 16 34 H 0.07 0.57 8.04 -51.93 -0.42 0.16 16 35 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 36 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.69 6.91 -51.93 -0.36 0.33 16 39 H 0.08 0.85 7.92 -51.93 -0.41 0.44 16 40 H 0.40 6.60 8.10 -40.82 -0.33 6.27 16 41 H 0.03 0.69 7.20 -51.93 -0.37 0.31 16 42 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.13 1.22 5.43 -52.48 -0.29 0.93 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -34.58 380.77 -8.38 -42.96 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -6.70 Total: 2.07 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.68 Total: -5.77 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.43 Total: -39.17 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.50 Total: -22.29 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.58 -8.38 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.846 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds