Wall clock time and date at job start Tue Mar 31 2020 12:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20760 * 120.00434 * 2 1 4 4 C 1.50706 * 120.00173 * 180.02562 * 2 1 3 5 5 C 1.53000 * 109.47326 * 180.02562 * 4 2 1 6 6 C 1.50702 * 109.47128 * 180.02562 * 5 4 2 7 7 C 1.38257 * 119.94719 * 89.99771 * 6 5 4 8 8 C 1.38142 * 120.05967 * 179.97438 * 7 6 5 9 9 C 1.38737 * 119.93930 * 0.02562 * 8 7 6 10 10 O 1.35904 * 120.05288 * 179.97438 * 9 8 7 11 11 C 1.42895 * 116.99923 * 185.35628 * 10 9 8 12 12 H 1.09003 * 109.46873 * 35.32221 * 11 10 9 13 13 C 1.53005 * 109.47275 * 275.32599 * 11 10 9 14 14 C 1.50700 * 109.47500 * 155.32516 * 11 10 9 15 15 O 1.21285 * 119.99575 * 5.00183 * 14 11 10 16 16 N 1.34771 * 120.00415 * 185.00464 * 14 11 10 17 17 C 1.46497 * 120.00040 * 180.02562 * 16 14 11 18 18 C 1.50699 * 109.47041 * 179.97438 * 17 16 14 19 19 H 1.07993 * 120.00286 * 359.97438 * 18 17 16 20 20 C 1.37879 * 120.00013 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00145 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99881 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.47502 * 90.00002 * 22 20 18 24 24 H 1.48505 * 109.46989 * 210.00132 * 22 20 18 25 25 H 1.48498 * 109.47018 * 329.99724 * 22 20 18 26 26 C 1.38728 * 119.88835 * 0.26896 * 9 8 7 27 27 C 1.38143 * 119.94523 * 359.43276 * 26 9 8 28 28 H 1.09003 * 109.47087 * 239.99775 * 1 2 3 29 29 H 1.08998 * 109.46759 * 359.97438 * 1 2 3 30 30 H 1.09004 * 109.47088 * 119.99840 * 1 2 3 31 31 H 1.09002 * 109.46679 * 60.00068 * 4 2 1 32 32 H 1.09000 * 109.46893 * 300.00127 * 4 2 1 33 33 H 1.09000 * 109.47254 * 59.99537 * 5 4 2 34 34 H 1.09005 * 109.46684 * 299.99743 * 5 4 2 35 35 H 1.08005 * 119.96914 * 359.97438 * 7 6 5 36 36 H 1.07992 * 120.03101 * 179.97438 * 8 7 6 37 37 H 1.08995 * 109.47225 * 300.00143 * 13 11 10 38 38 H 1.09005 * 109.46818 * 59.99972 * 13 11 10 39 39 H 1.08999 * 109.47322 * 179.97438 * 13 11 10 40 40 H 0.97003 * 119.99894 * 359.97438 * 16 14 11 41 41 H 1.08992 * 109.47312 * 299.99795 * 17 16 14 42 42 H 1.09004 * 109.47460 * 59.99612 * 17 16 14 43 43 H 0.97002 * 119.99874 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.02692 * 179.72421 * 26 9 8 45 45 H 1.07999 * 119.97464 * 180.27127 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0256 0.0002 6 6 4.5183 -2.3307 -0.0010 7 6 4.8637 -2.9271 -1.1996 8 6 5.5549 -4.1232 -1.2034 9 6 5.9019 -4.7262 -0.0031 10 8 6.5814 -5.9031 -0.0042 11 6 6.8025 -6.5257 1.2629 12 1 5.9419 -6.3509 1.9087 13 6 8.0552 -5.9327 1.9110 14 6 6.9915 -8.0081 1.0681 15 8 7.0325 -8.4722 -0.0517 16 7 7.1150 -8.8181 2.1382 17 6 7.2993 -10.2590 1.9488 18 6 7.4103 -10.9321 3.2925 19 1 7.3500 -10.3453 4.1971 20 6 7.5888 -12.2973 3.3670 21 7 7.6861 -12.8847 4.5397 22 14 7.6938 -13.3123 1.8024 23 1 9.1098 -13.4011 1.3640 24 1 7.1693 -14.6772 2.0617 25 1 6.8856 -12.6655 0.7377 26 6 5.5488 -4.1288 1.1981 27 6 4.8630 -2.9296 1.1966 28 1 -0.3633 -0.5139 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 1.9972 -1.8763 -0.8909 32 1 1.9972 -1.8771 0.8891 33 1 4.0278 -0.4545 0.8906 34 1 4.0284 -0.4534 -0.8894 35 1 4.5929 -2.4574 -2.1337 36 1 5.8241 -4.5888 -2.1398 37 1 8.9158 -6.1074 1.2652 38 1 7.9185 -4.8605 2.0519 39 1 8.2236 -6.4072 2.8776 40 1 7.0826 -8.4468 3.0338 41 1 6.4456 -10.6664 1.4073 42 1 8.2104 -10.4368 1.3774 43 1 7.8113 -13.8452 4.5921 44 1 5.8139 -4.5985 2.1338 45 1 4.5917 -2.4619 2.1315 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427647283.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:59 Heat of formation + Delta-G solvation = -122.448283 kcal Electronic energy + Delta-G solvation = -25299.137074 eV Core-core repulsion = 21473.763025 eV Total energy + Delta-G solvation = -3825.374049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.67282 -40.62879 -40.21317 -38.62282 -36.24602 -34.69315 -34.47512 -33.07954 -31.79755 -31.49854 -29.81532 -29.34073 -26.06436 -25.02053 -24.23550 -23.47656 -22.02773 -21.33823 -20.41713 -19.38652 -19.25962 -18.13481 -17.17050 -16.94109 -16.85312 -16.77605 -16.39962 -16.08037 -15.87767 -15.80994 -15.60425 -15.23382 -14.94785 -14.53536 -14.41633 -14.27726 -14.05635 -13.92231 -13.66164 -13.35940 -13.12975 -13.10012 -13.03605 -12.92173 -12.74260 -12.65566 -12.28656 -12.03700 -11.95173 -11.90096 -11.67446 -11.62121 -10.93227 -10.83882 -10.58463 -10.04944 -9.93760 -9.02878 -8.40897 -6.47919 0.39723 0.43230 1.07567 1.31784 1.34762 1.46470 1.51733 1.66843 2.27095 2.68736 2.76214 2.94498 3.22122 3.55968 3.74204 3.86080 3.90027 3.96026 4.02873 4.12664 4.21448 4.36238 4.41326 4.48494 4.60071 4.62911 4.68811 4.72487 4.75949 4.78764 4.86744 4.97674 4.98547 5.09684 5.14328 5.22133 5.23059 5.26239 5.35417 5.39713 5.41701 5.70036 5.83986 6.05526 6.39871 6.52079 6.63288 6.72440 7.11847 7.27997 8.73371 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.001965 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.334042 B =14243.946646 C =14511.615117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.356 3.644 3 O -0.507 6.507 4 C -0.166 4.166 5 C -0.063 4.063 6 C -0.122 4.122 7 C -0.075 4.075 8 C -0.165 4.165 9 C 0.105 3.895 10 O -0.315 6.315 11 C 0.076 3.924 12 H 0.125 0.875 13 C -0.169 4.169 14 C 0.503 3.497 15 O -0.584 6.584 16 N -0.693 5.693 17 C 0.231 3.769 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.029 3.971 21 N -0.928 5.928 22 Si 0.933 3.067 23 H -0.266 1.266 24 H -0.273 1.273 25 H -0.262 1.262 26 C -0.211 4.211 27 C -0.075 4.075 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.147 0.853 36 H 0.125 0.875 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.413 0.587 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.273 0.727 44 H 0.146 0.854 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.304 26.249 -6.818 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.236 3.764 3 O -0.385 6.385 4 C -0.203 4.203 5 C -0.100 4.100 6 C -0.122 4.122 7 C -0.093 4.093 8 C -0.184 4.184 9 C 0.060 3.940 10 O -0.228 6.228 11 C 0.017 3.983 12 H 0.142 0.858 13 C -0.226 4.226 14 C 0.289 3.711 15 O -0.464 6.464 16 N -0.345 5.345 17 C 0.108 3.892 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.172 4.172 21 N -0.566 5.566 22 Si 0.757 3.243 23 H -0.191 1.191 24 H -0.198 1.198 25 H -0.187 1.187 26 C -0.229 4.229 27 C -0.093 4.093 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.130 0.870 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.165 0.835 36 H 0.143 0.857 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.249 0.751 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.082 0.918 44 H 0.164 0.836 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.854 26.159 -7.662 29.724 hybrid contribution 0.303 -0.987 0.021 1.032 sum -11.551 25.172 -7.641 28.731 Atomic orbital electron populations 1.22364 0.92297 1.05027 1.06464 1.25169 0.93308 0.89882 0.68054 1.90422 1.73096 1.36775 1.38199 1.22205 0.94354 0.97076 1.06705 1.20266 0.93420 0.92814 1.03491 1.19903 1.01508 0.97833 0.92938 1.21043 0.95964 0.93283 0.98999 1.20621 1.03670 0.97888 0.96220 1.19405 0.93342 0.85654 0.95622 1.86179 1.71015 1.34403 1.31249 1.22232 1.02415 0.88306 0.85351 0.85796 1.22333 0.95243 1.03278 1.01766 1.20837 0.76578 0.89080 0.84633 1.90665 1.52031 1.77922 1.25775 1.45857 1.71545 1.08058 1.08996 1.19159 0.95612 0.78034 0.96398 1.21244 1.51703 0.93458 0.91948 0.91698 1.25541 0.93696 0.98832 0.99084 1.69967 1.49753 1.11459 1.25464 0.85922 0.79565 0.78611 0.80189 1.19070 1.19761 1.18655 1.21507 1.05414 0.98979 0.96991 1.21112 0.95695 0.93677 0.98782 0.86979 0.90944 0.86999 0.86629 0.86507 0.90990 0.91185 0.83500 0.85703 0.92201 0.88547 0.88339 0.75068 0.96814 0.96908 0.91808 0.83634 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.98 10.26 71.23 0.73 -0.25 16 2 C 0.36 3.88 7.27 29.10 0.21 4.09 16 3 O -0.51 -10.13 16.71 -1.45 -0.02 -10.16 16 4 C -0.17 -1.31 5.62 29.85 0.17 -1.14 16 5 C -0.06 -0.77 4.63 29.85 0.14 -0.63 16 6 C -0.12 -1.82 5.13 -19.85 -0.10 -1.92 16 7 C -0.08 -1.26 9.69 22.25 0.22 -1.04 16 8 C -0.17 -3.71 9.99 22.37 0.22 -3.48 16 9 C 0.10 2.59 6.60 22.51 0.15 2.74 16 10 O -0.31 -9.77 9.34 -73.48 -0.69 -10.46 16 11 C 0.08 2.07 2.64 29.85 0.08 2.15 16 12 H 0.12 2.61 6.31 -2.39 -0.02 2.60 16 13 C -0.17 -3.57 9.12 71.98 0.66 -2.91 16 14 C 0.50 19.13 7.18 87.66 0.63 19.76 16 15 O -0.58 -28.00 16.51 15.94 0.26 -27.74 16 16 N -0.69 -26.78 5.51 -466.81 -2.57 -29.35 16 17 C 0.23 11.16 4.50 85.63 0.38 11.55 16 18 C -0.55 -29.30 9.83 25.60 0.25 -29.05 16 19 H 0.06 3.61 7.84 -2.91 -0.02 3.58 16 20 C 0.03 1.62 5.47 84.65 0.46 2.08 16 21 N -0.93 -54.31 13.96 21.45 0.30 -54.01 16 22 Si 0.93 43.55 27.47 68.60 1.88 45.43 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.26 -12.22 6.54 99.48 0.65 -11.57 16 26 C -0.21 -3.96 8.24 22.36 0.18 -3.78 16 27 C -0.07 -1.14 9.69 22.25 0.22 -0.92 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.07 0.50 8.12 -2.39 -0.02 0.48 16 30 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.95 8.04 -2.39 -0.02 0.94 16 34 H 0.07 0.95 8.04 -2.38 -0.02 0.93 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.12 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.10 1.59 6.91 -2.38 -0.02 1.57 16 39 H 0.10 1.76 7.92 -2.39 -0.02 1.74 16 40 H 0.41 13.25 8.10 -92.71 -0.75 12.50 16 41 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 42 H 0.01 0.65 7.57 -2.39 -0.02 0.64 16 43 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 44 H 0.15 2.21 5.43 -2.91 -0.02 2.20 16 45 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -76.53 380.77 3.96 -72.57 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.19 Total: 16.46 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.60 Total: -2.75 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -2.27 Total: -83.36 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.45 Total: -48.35 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Total: -76.53 3.96 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647283.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.875 kcal (2) G-P(sol) polarization free energy of solvation -76.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds