Wall clock time and date at job start Tue Mar 31 2020 12:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20762 * 120.00059 * 2 1 4 4 C 1.50706 * 120.00359 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47046 * 179.97438 * 5 4 2 7 7 C 1.38264 * 119.94164 * 89.99562 * 6 5 4 8 8 C 1.38145 * 120.05560 * 180.27243 * 7 6 5 9 9 C 1.38735 * 119.93879 * 359.45258 * 8 7 6 10 10 O 1.35905 * 120.05479 * 180.29176 * 9 8 7 11 11 C 1.42901 * 116.99906 * 354.87835 * 10 9 8 12 12 H 1.08994 * 109.47031 * 324.68157 * 11 10 9 13 13 C 1.52991 * 109.47567 * 84.68729 * 11 10 9 14 14 C 1.50702 * 109.46693 * 204.68497 * 11 10 9 15 15 O 1.21282 * 120.00229 * 0.02562 * 14 11 10 16 16 N 1.34782 * 120.00030 * 179.97438 * 14 11 10 17 17 C 1.46491 * 120.00408 * 179.97438 * 16 14 11 18 18 C 1.50699 * 109.47264 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00029 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99786 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99519 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47009 * 90.00448 * 22 20 18 24 24 H 1.48502 * 109.46739 * 210.00080 * 22 20 18 25 25 H 1.48501 * 109.47443 * 329.99946 * 22 20 18 26 26 C 1.38728 * 119.89291 * 0.52508 * 9 8 7 27 27 C 1.38148 * 119.94311 * 359.74978 * 26 9 8 28 28 H 1.09005 * 109.46950 * 269.99913 * 1 2 3 29 29 H 1.08996 * 109.47192 * 29.99889 * 1 2 3 30 30 H 1.09003 * 109.46812 * 149.99881 * 1 2 3 31 31 H 1.08997 * 109.47138 * 59.99368 * 4 2 1 32 32 H 1.09008 * 109.46779 * 299.99641 * 4 2 1 33 33 H 1.09000 * 109.46999 * 59.99417 * 5 4 2 34 34 H 1.09008 * 109.46565 * 299.99441 * 5 4 2 35 35 H 1.07995 * 119.97606 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.03428 * 179.70556 * 8 7 6 37 37 H 1.08994 * 109.47411 * 59.99661 * 13 11 10 38 38 H 1.08996 * 109.47314 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.46843 * 299.99977 * 13 11 10 40 40 H 0.97006 * 119.99265 * 0.02562 * 16 14 11 41 41 H 1.09002 * 109.47057 * 300.00448 * 17 16 14 42 42 H 1.09002 * 109.47036 * 60.00335 * 17 16 14 43 43 H 0.97000 * 119.99932 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03398 * 179.76639 * 26 9 8 45 45 H 1.07991 * 119.97560 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5183 -2.3306 0.0002 7 6 4.8638 -2.9280 -1.1978 8 6 5.5496 -4.1272 -1.2005 9 6 5.9015 -4.7263 0.0003 10 8 6.5814 -5.9031 0.0003 11 6 6.8029 -6.5244 -1.2673 12 1 5.9426 -6.3491 -1.9131 13 6 8.0557 -5.9306 -1.9144 14 6 6.9921 -8.0069 -1.0738 15 8 6.9416 -8.4845 0.0399 16 7 7.2163 -8.8023 -2.1386 17 6 7.4008 -10.2433 -1.9505 18 6 7.6343 -10.8986 -3.2874 19 1 7.6447 -10.3013 -4.1871 20 6 7.8357 -12.2606 -3.3617 21 7 7.8235 -12.9879 -2.2661 22 14 8.1259 -13.0727 -5.0188 23 1 9.5813 -13.0920 -5.3124 24 1 7.6091 -14.4645 -4.9851 25 1 7.4177 -12.3072 -6.0760 26 6 5.5540 -4.1247 1.2010 27 6 4.8633 -2.9283 1.1984 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.9972 -1.8763 -0.8907 32 1 1.9972 -1.8771 0.8893 33 1 4.0277 -0.4545 0.8906 34 1 4.0284 -0.4534 -0.8895 35 1 4.5939 -2.4588 -2.1323 36 1 5.8151 -4.5960 -2.1366 37 1 8.9160 -6.1059 -1.2686 38 1 8.2244 -6.4042 -2.8815 39 1 7.9189 -4.8583 -2.0543 40 1 7.2563 -8.4203 -3.0294 41 1 8.2616 -10.4183 -1.3052 42 1 6.5086 -10.6666 -1.4889 43 1 7.9648 -13.9461 -2.3184 44 1 5.8236 -4.5910 2.1372 45 1 4.5922 -2.4597 2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427647284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:02 Heat of formation + Delta-G solvation = -104.381344 kcal Electronic energy + Delta-G solvation = -25241.799354 eV Core-core repulsion = 21417.208746 eV Total energy + Delta-G solvation = -3824.590608 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59165 -39.89118 -38.92335 -37.51101 -34.29839 -33.91454 -32.68923 -31.78939 -31.06993 -30.79400 -28.72068 -27.29978 -25.01291 -24.07425 -23.23056 -22.26888 -21.07639 -19.93495 -19.69579 -18.34526 -17.56895 -16.49230 -16.28687 -15.89169 -15.59480 -15.47749 -15.44070 -15.15699 -14.95509 -14.48592 -14.32871 -14.06398 -13.83398 -13.47785 -13.18495 -13.06114 -12.94987 -12.75891 -12.52671 -12.42799 -12.26260 -12.05100 -11.82805 -11.69405 -11.55542 -11.40226 -11.04021 -10.99276 -10.90317 -10.78038 -10.35830 -10.04845 -9.45951 -9.16674 -9.08713 -8.79797 -8.14578 -7.99167 -6.21349 -4.28960 1.19142 1.26488 1.55046 2.90673 3.18184 3.21155 3.27545 3.29658 3.51581 3.71735 4.06935 4.31560 4.49340 4.55603 4.64957 4.69153 4.75518 4.78114 4.85872 4.94304 4.97575 5.09972 5.14909 5.16441 5.19608 5.25139 5.27240 5.39227 5.54537 5.59745 5.62465 5.64674 5.77144 5.89468 6.04294 6.15622 6.24634 6.44854 6.63621 7.09463 7.20387 7.28346 7.40374 7.44624 7.59947 7.90404 8.49324 8.70112 8.96197 9.37486 10.88743 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.001907 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.658093 B =14678.485572 C =15089.796725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.353 3.647 3 O -0.461 6.461 4 C -0.169 4.169 5 C -0.064 4.064 6 C -0.131 4.131 7 C -0.075 4.075 8 C -0.211 4.211 9 C 0.136 3.864 10 O -0.283 6.283 11 C 0.065 3.935 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.503 3.497 15 O -0.532 6.532 16 N -0.706 5.706 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.149 4.149 27 C -0.076 4.076 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.123 0.877 36 H 0.131 0.869 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.391 0.609 41 H 0.029 0.971 42 H 0.029 0.971 43 H 0.267 0.733 44 H 0.132 0.868 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.096 24.780 1.747 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.229 3.771 3 O -0.335 6.335 4 C -0.206 4.206 5 C -0.102 4.102 6 C -0.131 4.131 7 C -0.093 4.093 8 C -0.229 4.229 9 C 0.090 3.910 10 O -0.195 6.195 11 C 0.005 3.995 12 H 0.112 0.888 13 C -0.232 4.232 14 C 0.285 3.715 15 O -0.409 6.409 16 N -0.356 5.356 17 C 0.130 3.870 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.521 5.521 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.168 4.168 27 C -0.094 4.094 28 H 0.114 0.886 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.141 0.859 36 H 0.149 0.851 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.224 0.776 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.076 0.924 44 H 0.150 0.850 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.704 24.634 2.789 27.004 hybrid contribution 0.079 -0.534 -1.534 1.626 sum -10.626 24.101 1.256 26.369 Atomic orbital electron populations 1.22313 0.94535 1.04828 1.04718 1.24720 0.92000 0.90368 0.69968 1.90422 1.72006 1.35285 1.35761 1.22204 0.95984 0.97252 1.05198 1.20287 0.92172 0.93905 1.03812 1.19680 1.02546 0.97735 0.93182 1.20790 0.96609 0.94310 0.97570 1.21333 1.05689 0.98559 0.97359 1.19161 0.91735 0.85909 0.94217 1.86249 1.69741 1.32820 1.30657 1.22347 0.99765 0.92592 0.84816 0.88804 1.22325 0.97494 1.01638 1.01771 1.19910 0.78801 0.86766 0.85984 1.90705 1.50365 1.75699 1.24155 1.46381 1.70486 1.10815 1.07905 1.19167 0.97540 0.72701 0.97552 1.21196 1.51654 0.93057 0.92445 0.91817 1.24957 0.94771 0.97074 0.97190 1.69973 1.47992 1.06740 1.27397 0.86395 0.78511 0.78712 0.83169 1.20429 1.20972 1.19744 1.20471 1.02801 0.96888 0.96600 1.20813 0.96786 0.94132 0.97661 0.88641 0.89790 0.89563 0.88139 0.88092 0.90661 0.90690 0.85947 0.85107 0.90659 0.90010 0.91142 0.77614 0.95294 0.95324 0.92364 0.84994 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.77 10.25 36.00 0.37 -0.40 16 2 C 0.35 2.31 7.27 -29.04 -0.21 2.10 16 3 O -0.46 -4.82 16.72 6.00 0.10 -4.72 16 4 C -0.17 -0.94 5.61 -27.88 -0.16 -1.10 16 5 C -0.06 -0.48 4.63 -27.88 -0.13 -0.61 16 6 C -0.13 -1.18 5.13 -104.60 -0.54 -1.72 16 7 C -0.07 -0.70 9.69 -39.61 -0.38 -1.08 16 8 C -0.21 -2.32 8.24 -39.43 -0.32 -2.64 16 9 C 0.14 1.82 6.60 -39.22 -0.26 1.56 16 10 O -0.28 -4.61 9.33 -39.35 -0.37 -4.98 16 11 C 0.06 0.96 2.65 -27.89 -0.07 0.89 16 12 H 0.09 1.16 6.31 -51.93 -0.33 0.83 16 13 C -0.17 -2.08 9.06 37.15 0.34 -1.75 16 14 C 0.50 10.13 7.23 -10.98 -0.08 10.05 16 15 O -0.53 -13.32 16.50 -14.36 -0.24 -13.56 16 16 N -0.71 -14.39 5.44 -61.47 -0.33 -14.73 16 17 C 0.25 6.52 5.43 -5.20 -0.03 6.49 16 18 C -0.55 -14.44 9.28 -34.44 -0.32 -14.76 16 19 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.68 13.29 55.43 0.74 -24.94 16 22 Si 0.91 20.45 29.54 -169.99 -5.02 15.43 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C -0.15 -1.78 9.99 -39.43 -0.39 -2.17 16 27 C -0.08 -0.73 9.69 -39.60 -0.38 -1.11 16 28 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.18 8.12 -51.93 -0.42 -0.24 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.46 8.14 -51.92 -0.42 0.04 16 33 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 34 H 0.07 0.59 8.04 -51.92 -0.42 0.17 16 35 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 36 H 0.13 1.26 5.43 -52.49 -0.29 0.97 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 0.85 7.57 -51.93 -0.39 0.46 16 39 H 0.07 0.70 6.90 -51.93 -0.36 0.34 16 40 H 0.39 6.61 7.74 -40.82 -0.32 6.29 16 41 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 44 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 383.58 15.07 5.78 5.78 Total: -1.00 -34.64 383.58 -8.71 -43.35 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.70 Total: 2.97 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.67 Total: -4.61 kcal Atomic # 7 Polarization: -40.07 SS G_CDS: 0.40 Total: -39.67 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.50 Total: -23.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.64 -8.71 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.027 kcal (2) G-P(sol) polarization free energy of solvation -34.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds