Wall clock time and date at job start Tue Mar 31 2020 12:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.20762 * 120.00059 * 2 1 4 4 C 1.50706 * 120.00359 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.47452 * 180.02562 * 4 2 1 6 6 C 1.50699 * 109.47046 * 179.97438 * 5 4 2 7 7 C 1.38264 * 119.94164 * 89.99562 * 6 5 4 8 8 C 1.38145 * 120.05560 * 180.27243 * 7 6 5 9 9 C 1.38735 * 119.93879 * 359.45258 * 8 7 6 10 10 O 1.35905 * 120.05479 * 180.29176 * 9 8 7 11 11 C 1.42901 * 116.99906 * 354.87835 * 10 9 8 12 12 H 1.08994 * 109.47031 * 324.68157 * 11 10 9 13 13 C 1.52991 * 109.47567 * 84.68729 * 11 10 9 14 14 C 1.50702 * 109.46693 * 204.68497 * 11 10 9 15 15 O 1.21282 * 120.00229 * 0.02562 * 14 11 10 16 16 N 1.34782 * 120.00030 * 179.97438 * 14 11 10 17 17 C 1.46491 * 120.00408 * 179.97438 * 16 14 11 18 18 C 1.50699 * 109.47264 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00029 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99786 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00010 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99519 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47009 * 90.00448 * 22 20 18 24 24 H 1.48502 * 109.46739 * 210.00080 * 22 20 18 25 25 H 1.48501 * 109.47443 * 329.99946 * 22 20 18 26 26 C 1.38728 * 119.89291 * 0.52508 * 9 8 7 27 27 C 1.38148 * 119.94311 * 359.74978 * 26 9 8 28 28 H 1.09005 * 109.46950 * 269.99913 * 1 2 3 29 29 H 1.08996 * 109.47192 * 29.99889 * 1 2 3 30 30 H 1.09003 * 109.46812 * 149.99881 * 1 2 3 31 31 H 1.08997 * 109.47138 * 59.99368 * 4 2 1 32 32 H 1.09008 * 109.46779 * 299.99641 * 4 2 1 33 33 H 1.09000 * 109.46999 * 59.99417 * 5 4 2 34 34 H 1.09008 * 109.46565 * 299.99441 * 5 4 2 35 35 H 1.07995 * 119.97606 * 0.02562 * 7 6 5 36 36 H 1.07996 * 120.03428 * 179.70556 * 8 7 6 37 37 H 1.08994 * 109.47411 * 59.99661 * 13 11 10 38 38 H 1.08996 * 109.47314 * 180.02562 * 13 11 10 39 39 H 1.09002 * 109.46843 * 299.99977 * 13 11 10 40 40 H 0.97006 * 119.99265 * 0.02562 * 16 14 11 41 41 H 1.09002 * 109.47057 * 300.00448 * 17 16 14 42 42 H 1.09002 * 109.47036 * 60.00335 * 17 16 14 43 43 H 0.97000 * 119.99932 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.03398 * 179.76639 * 26 9 8 45 45 H 1.07991 * 119.97560 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1107 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 6 3.7648 -1.0255 0.0002 6 6 4.5183 -2.3306 0.0002 7 6 4.8638 -2.9280 -1.1978 8 6 5.5496 -4.1272 -1.2005 9 6 5.9015 -4.7263 0.0003 10 8 6.5814 -5.9031 0.0003 11 6 6.8029 -6.5244 -1.2673 12 1 5.9426 -6.3491 -1.9131 13 6 8.0557 -5.9306 -1.9144 14 6 6.9921 -8.0069 -1.0738 15 8 6.9416 -8.4845 0.0399 16 7 7.2163 -8.8023 -2.1386 17 6 7.4008 -10.2433 -1.9505 18 6 7.6343 -10.8986 -3.2874 19 1 7.6447 -10.3013 -4.1871 20 6 7.8357 -12.2606 -3.3617 21 7 7.8235 -12.9879 -2.2661 22 14 8.1259 -13.0727 -5.0188 23 1 9.5813 -13.0920 -5.3124 24 1 7.6091 -14.4645 -4.9851 25 1 7.4177 -12.3072 -6.0760 26 6 5.5540 -4.1247 1.2010 27 6 4.8633 -2.9283 1.1984 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.9972 -1.8763 -0.8907 32 1 1.9972 -1.8771 0.8893 33 1 4.0277 -0.4545 0.8906 34 1 4.0284 -0.4534 -0.8895 35 1 4.5939 -2.4588 -2.1323 36 1 5.8151 -4.5960 -2.1366 37 1 8.9160 -6.1059 -1.2686 38 1 8.2244 -6.4042 -2.8815 39 1 7.9189 -4.8583 -2.0543 40 1 7.2563 -8.4203 -3.0294 41 1 8.2616 -10.4183 -1.3052 42 1 6.5086 -10.6666 -1.4889 43 1 7.9648 -13.9461 -2.3184 44 1 5.8236 -4.5910 2.1372 45 1 4.5922 -2.4597 2.1328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427647284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:01 Heat of formation + Delta-G solvation = -126.152770 kcal Electronic energy + Delta-G solvation = -25242.743434 eV Core-core repulsion = 21417.208746 eV Total energy + Delta-G solvation = -3825.534688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65836 -40.61261 -40.18892 -38.60868 -36.22381 -34.70120 -34.44607 -32.99086 -31.77962 -31.48853 -29.38285 -29.21239 -26.09264 -25.14015 -24.39864 -23.62534 -22.01166 -21.25674 -20.41888 -19.35581 -19.16454 -17.84272 -17.17389 -16.96383 -16.83057 -16.74513 -16.41993 -16.07577 -15.87600 -15.75914 -15.60821 -15.22397 -14.80842 -14.53648 -14.17491 -14.11764 -13.99906 -13.91298 -13.61924 -13.35628 -13.12082 -13.03567 -12.93868 -12.90570 -12.72467 -12.64717 -12.28671 -12.22295 -12.03056 -11.89369 -11.62138 -11.49828 -10.81864 -10.78655 -10.57587 -9.93775 -9.93242 -9.02546 -8.29439 -6.46490 0.39828 0.43449 1.07230 1.44142 1.46698 1.54995 1.57834 1.72317 2.37353 2.73796 2.76392 3.05807 3.22143 3.58258 3.75878 3.86658 3.91315 3.96248 4.03156 4.12804 4.21486 4.38260 4.41362 4.48942 4.59821 4.65230 4.68540 4.72432 4.79310 4.87059 4.97886 5.07280 5.10951 5.14520 5.20427 5.22904 5.24914 5.35640 5.41799 5.42049 5.62055 5.69981 5.81532 5.85849 6.40975 6.62746 6.63316 6.79473 7.20808 7.37013 8.82739 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.001907 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.658093 B =14678.485572 C =15089.796725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.357 3.643 3 O -0.508 6.508 4 C -0.167 4.167 5 C -0.062 4.062 6 C -0.122 4.122 7 C -0.074 4.074 8 C -0.210 4.210 9 C 0.104 3.896 10 O -0.317 6.317 11 C 0.078 3.922 12 H 0.126 0.874 13 C -0.168 4.168 14 C 0.497 3.503 15 O -0.590 6.590 16 N -0.694 5.694 17 C 0.266 3.734 18 C -0.555 4.555 19 H 0.089 0.911 20 C 0.003 3.997 21 N -0.931 5.931 22 Si 0.986 3.014 23 H -0.271 1.271 24 H -0.286 1.286 25 H -0.253 1.253 26 C -0.167 4.167 27 C -0.075 4.075 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.056 0.944 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.412 0.588 41 H -0.011 1.011 42 H -0.011 1.011 43 H 0.269 0.731 44 H 0.123 0.877 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.293 26.687 -1.117 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.237 3.763 3 O -0.385 6.385 4 C -0.204 4.204 5 C -0.100 4.100 6 C -0.122 4.122 7 C -0.092 4.092 8 C -0.228 4.228 9 C 0.059 3.941 10 O -0.231 6.231 11 C 0.018 3.982 12 H 0.143 0.857 13 C -0.225 4.225 14 C 0.283 3.717 15 O -0.471 6.471 16 N -0.346 5.346 17 C 0.143 3.857 18 C -0.593 4.593 19 H 0.107 0.893 20 C -0.197 4.197 21 N -0.570 5.570 22 Si 0.809 3.191 23 H -0.197 1.197 24 H -0.212 1.212 25 H -0.177 1.177 26 C -0.186 4.186 27 C -0.093 4.093 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.167 0.833 36 H 0.165 0.835 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.249 0.751 41 H 0.007 0.993 42 H 0.007 0.993 43 H 0.077 0.923 44 H 0.141 0.859 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -11.917 26.592 -0.112 29.140 hybrid contribution 0.382 -1.034 -0.531 1.223 sum -11.535 25.558 -0.643 28.048 Atomic orbital electron populations 1.22335 0.92310 1.05695 1.05776 1.25168 0.93287 0.89864 0.67999 1.90420 1.73050 1.36782 1.38266 1.22232 0.94383 0.97116 1.06661 1.20266 0.93398 0.92770 1.03518 1.19909 1.01527 0.97867 0.92915 1.21116 0.95619 0.93627 0.98792 1.21512 1.05429 0.98971 0.96930 1.19430 0.93334 0.85609 0.95711 1.86189 1.70990 1.34510 1.31419 1.22250 1.02470 0.88159 0.85272 0.85659 1.22339 0.95086 1.03309 1.01809 1.20964 0.76727 0.89280 0.84696 1.90671 1.52607 1.77380 1.26439 1.46036 1.70386 1.08776 1.09391 1.18615 0.94062 0.75976 0.97021 1.21604 1.51093 0.93644 0.92943 0.89334 1.26088 0.94150 0.97919 1.01511 1.70143 1.49250 1.07166 1.30392 0.85130 0.78691 0.77263 0.77969 1.19669 1.21165 1.17657 1.20625 1.03782 0.97974 0.96202 1.21038 0.95948 0.93210 0.99057 0.87349 0.90209 0.87418 0.86462 0.86680 0.91198 0.90902 0.83271 0.83510 0.92441 0.88032 0.88426 0.75121 0.99315 0.99272 0.92255 0.85908 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 10.25 71.23 0.73 -0.28 16 2 C 0.36 3.96 7.27 29.10 0.21 4.17 16 3 O -0.51 -10.18 16.72 -1.46 -0.02 -10.20 16 4 C -0.17 -1.38 5.61 29.85 0.17 -1.21 16 5 C -0.06 -0.78 4.63 29.85 0.14 -0.64 16 6 C -0.12 -1.89 5.13 -19.85 -0.10 -1.99 16 7 C -0.07 -1.15 9.69 22.25 0.22 -0.93 16 8 C -0.21 -4.09 8.24 22.37 0.18 -3.91 16 9 C 0.10 2.72 6.60 22.51 0.15 2.86 16 10 O -0.32 -10.50 9.33 -73.44 -0.69 -11.18 16 11 C 0.08 2.25 2.65 29.85 0.08 2.33 16 12 H 0.13 2.79 6.31 -2.39 -0.02 2.78 16 13 C -0.17 -3.67 9.06 71.98 0.65 -3.02 16 14 C 0.50 20.57 7.23 87.66 0.63 21.20 16 15 O -0.59 -31.32 16.50 16.00 0.26 -31.05 16 16 N -0.69 -28.63 5.44 -466.79 -2.54 -31.17 16 17 C 0.27 14.43 5.43 85.63 0.46 14.90 16 18 C -0.56 -29.42 9.28 25.60 0.24 -29.18 16 19 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 20 C 0.00 0.16 5.46 84.66 0.46 0.63 16 21 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 22 Si 0.99 41.38 29.54 68.60 2.03 43.40 16 23 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 24 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 26 C -0.17 -3.98 9.99 22.37 0.22 -3.76 16 27 C -0.07 -1.32 9.69 22.25 0.22 -1.11 16 28 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 0.09 8.12 -2.39 -0.02 0.07 16 31 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.97 8.04 -2.39 -0.02 0.96 16 34 H 0.07 0.98 8.04 -2.38 -0.02 0.96 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.15 2.28 5.43 -2.91 -0.02 2.26 16 37 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.80 7.57 -2.39 -0.02 1.78 16 39 H 0.10 1.64 6.90 -2.39 -0.02 1.62 16 40 H 0.41 13.30 7.74 -92.70 -0.72 12.59 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 45 H 0.15 1.90 8.06 -2.92 -0.02 1.88 16 Total: -1.00 -80.64 383.58 4.27 -76.37 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.28 Total: 19.20 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: 4.66 Total: 0.05 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -2.25 Total: -86.58 kcal Atomic # 8 Polarization: -51.99 SS G_CDS: -0.45 Total: -52.44 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.40 kcal Total: -80.64 4.27 -76.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.784 kcal (2) G-P(sol) polarization free energy of solvation -80.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds