Wall clock time and date at job start Tue Mar 31 2020 12:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47432 * 2 1 4 4 C 1.42904 * 114.00302 * 180.02562 * 3 2 1 5 5 C 1.53777 * 113.68928 * 110.93774 * 4 3 2 6 6 C 1.53781 * 87.08080 * 139.99348 * 5 4 3 7 7 N 1.46498 * 113.61297 * 220.01883 * 6 5 4 8 8 C 1.46494 * 120.00382 * 43.45383 * 7 6 5 9 9 S 1.65599 * 119.99666 * 223.45868 * 7 6 5 10 10 O 1.42109 * 104.27704 * 206.06817 * 9 7 6 11 11 O 1.42094 * 104.28057 * 333.92396 * 9 7 6 12 12 C 1.81406 * 104.45171 * 89.99961 * 9 7 6 13 13 C 1.53005 * 109.47066 * 179.97438 * 12 9 7 14 14 C 1.53001 * 109.47172 * 299.99786 * 13 12 9 15 15 C 1.53001 * 109.47197 * 59.99837 * 13 12 9 16 16 C 1.50694 * 109.46780 * 179.97438 * 13 12 9 17 17 H 1.07999 * 120.00105 * 0.02562 * 16 13 12 18 18 C 1.37878 * 120.00010 * 179.97438 * 16 13 12 19 19 N 1.31513 * 119.99726 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00208 * 180.02562 * 18 16 13 21 21 H 1.48494 * 109.47389 * 90.00081 * 20 18 16 22 22 H 1.48506 * 109.47058 * 210.00007 * 20 18 16 23 23 H 1.48502 * 109.47036 * 329.99511 * 20 18 16 24 24 C 1.53785 * 113.61147 * 208.47293 * 4 3 2 25 25 H 1.09003 * 109.46908 * 299.99658 * 1 2 3 26 26 H 1.08991 * 109.47241 * 59.99700 * 1 2 3 27 27 H 1.08997 * 109.46904 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46908 * 240.00341 * 2 1 3 29 29 H 1.08999 * 109.47355 * 120.00669 * 2 1 3 30 30 H 1.08998 * 112.84743 * 339.66654 * 4 3 2 31 31 H 1.08999 * 113.60987 * 254.53755 * 5 4 3 32 32 H 1.08996 * 113.62155 * 25.44271 * 5 4 3 33 33 H 1.08993 * 113.69330 * 89.12125 * 6 5 4 34 34 H 1.09004 * 109.47160 * 92.21941 * 8 7 6 35 35 H 1.09000 * 109.47574 * 212.22791 * 8 7 6 36 36 H 1.09006 * 109.47080 * 332.22817 * 8 7 6 37 37 H 1.08995 * 109.46467 * 299.99880 * 12 9 7 38 38 H 1.08994 * 109.47060 * 59.99783 * 12 9 7 39 39 H 1.09000 * 109.46925 * 59.99888 * 14 13 12 40 40 H 1.08995 * 109.47054 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.46835 * 300.00369 * 14 13 12 42 42 H 1.09000 * 109.46828 * 59.99297 * 15 13 12 43 43 H 1.08995 * 109.47221 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47050 * 300.00204 * 15 13 12 45 45 H 0.96996 * 120.00070 * 180.02562 * 19 18 16 46 46 H 1.08997 * 113.61245 * 334.47962 * 24 4 3 47 47 H 1.08995 * 113.61489 * 105.38646 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4600 -0.0006 5 6 4.0066 2.0107 -1.3160 6 6 4.9921 2.8185 -0.4550 7 7 5.2254 4.1777 -0.9492 8 6 4.0987 4.9937 -1.4084 9 16 6.7629 4.7916 -0.9889 10 8 6.5809 6.1983 -0.9014 11 8 7.4518 4.0775 0.0281 12 6 7.3917 4.3319 -2.6272 13 6 8.8225 4.8498 -2.7880 14 6 8.8324 6.3732 -2.6470 15 6 9.7129 4.2319 -1.7081 16 6 9.3451 4.4673 -4.1487 17 1 8.7192 3.9110 -4.8308 18 6 10.6218 4.8286 -4.5234 19 7 11.3838 5.5065 -3.6930 20 14 11.2694 4.3551 -6.2104 21 1 10.9472 5.4293 -7.1837 22 1 12.7418 4.1741 -6.1425 23 1 10.6342 3.0855 -6.6460 24 6 3.9475 2.7434 0.6712 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.9274 0.5545 0.3481 31 1 4.4870 1.2519 -1.9337 32 1 3.3049 2.6304 -1.8742 33 1 5.9158 2.2855 -0.2299 34 1 3.7223 5.5928 -0.5792 35 1 4.4303 5.6521 -2.2113 36 1 3.3051 4.3432 -1.7762 37 1 7.3843 3.2467 -2.7277 38 1 6.7576 4.7725 -3.3965 39 1 8.4544 6.6495 -1.6627 40 1 9.8515 6.7421 -2.7621 41 1 8.1980 6.8134 -3.4164 42 1 9.7058 3.1465 -1.8085 43 1 10.7322 4.6004 -1.8229 44 1 9.3350 4.5081 -0.7237 45 1 12.2818 5.7609 -3.9567 46 1 3.2296 3.5633 0.6562 47 1 4.3802 2.5762 1.6575 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451567260.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:49 Heat of formation + Delta-G solvation = -115.362737 kcal Electronic energy + Delta-G solvation = -26446.522538 eV Core-core repulsion = 22756.899693 eV Total energy + Delta-G solvation = -3689.622845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70289 -38.16596 -38.14500 -37.92033 -36.87704 -34.73840 -33.63120 -31.68534 -28.41291 -27.74676 -27.69931 -27.25233 -26.67617 -24.52211 -23.59137 -21.32315 -20.57547 -19.81739 -18.99000 -18.06564 -17.75264 -17.02790 -17.01300 -16.66234 -16.51565 -16.26133 -15.58653 -15.14889 -14.91998 -14.68751 -14.49978 -14.42705 -13.91740 -13.86693 -13.70341 -13.42435 -13.38042 -13.14054 -12.97587 -12.89321 -12.78196 -12.72588 -12.52893 -12.43244 -12.32181 -12.17523 -12.15307 -11.97311 -11.79244 -11.76160 -11.61817 -11.57273 -11.32240 -10.62655 -10.42087 -10.33045 -9.85814 -8.03356 -6.22214 -0.64210 1.43839 1.45569 1.54268 1.77188 2.43972 2.81714 2.90354 3.18388 3.25391 3.48839 3.59730 3.85994 3.88519 3.94693 4.10418 4.16517 4.24951 4.32248 4.45029 4.56390 4.59092 4.60883 4.69878 4.78190 4.84579 4.85966 4.88021 4.90064 4.97128 4.99524 5.05278 5.06623 5.10061 5.12889 5.30258 5.37559 5.44764 5.49783 5.64136 5.67593 5.96660 6.11032 6.33775 6.38916 6.82664 7.46164 8.96537 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.021059 B = 0.003251 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.278485 B = 8611.904907 C = 9280.001209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.047 3.953 3 O -0.391 6.391 4 C 0.071 3.929 5 C -0.162 4.162 6 C 0.113 3.887 7 N -0.989 5.989 8 C 0.081 3.919 9 S 2.607 3.393 10 O -0.989 6.989 11 O -0.987 6.987 12 C -0.585 4.585 13 C 0.070 3.930 14 C -0.160 4.160 15 C -0.160 4.160 16 C -0.517 4.517 17 H 0.063 0.937 18 C 0.017 3.983 19 N -0.908 5.908 20 Si 0.955 3.045 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.266 1.266 24 C -0.147 4.147 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.070 0.930 44 H 0.032 0.968 45 H 0.261 0.739 46 H 0.093 0.907 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.695 -10.683 5.232 23.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.311 6.311 4 C 0.012 3.988 5 C -0.201 4.201 6 C 0.006 3.994 7 N -0.826 5.826 8 C -0.063 4.063 9 S 2.706 3.294 10 O -0.979 6.979 11 O -0.977 6.977 12 C -0.717 4.717 13 C 0.068 3.932 14 C -0.218 4.218 15 C -0.217 4.217 16 C -0.556 4.556 17 H 0.081 0.919 18 C -0.182 4.182 19 N -0.547 5.547 20 Si 0.781 3.219 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.191 1.191 24 C -0.186 4.186 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.126 0.874 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.139 0.861 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.152 0.848 39 H 0.050 0.950 40 H 0.089 0.911 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.262 -9.940 5.973 22.484 hybrid contribution 0.869 -0.341 -1.373 1.661 sum -18.393 -10.282 4.600 21.568 Atomic orbital electron populations 1.21766 0.93213 1.03215 1.02578 1.22711 0.96152 0.83153 1.00896 1.87925 1.20701 1.27785 1.94663 1.23442 0.81159 0.98006 0.96175 1.23992 0.98268 0.99923 0.97936 1.22334 0.99161 0.81570 0.96307 1.57303 1.23078 1.23776 1.78458 1.21693 0.89668 0.94921 1.00016 1.05017 0.72909 0.73567 0.77866 1.93495 1.85019 1.31864 1.87531 1.93483 1.73438 1.74685 1.56081 1.30496 1.08307 1.11804 1.21115 1.17917 0.87054 0.92003 0.96270 1.22211 1.03150 0.98114 0.98335 1.22203 1.03864 0.99749 0.95931 1.21296 0.99170 1.35625 0.99539 0.91889 1.25691 0.97157 0.94965 1.00433 1.69944 1.09209 1.39009 1.36561 0.85605 0.77279 0.78757 0.80275 1.20410 1.21252 1.19070 1.23669 0.97670 0.98540 0.98727 0.92416 0.92386 0.89407 0.92536 0.92473 0.87445 0.89245 0.87957 0.86096 0.92325 0.90852 0.88142 0.84646 0.84800 0.94987 0.91054 0.94157 0.93987 0.91092 0.94935 0.92914 0.88838 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 10.28 71.98 0.74 -0.92 16 2 C 0.05 0.62 6.50 71.98 0.47 1.08 16 3 O -0.39 -7.20 10.36 -148.98 -1.54 -8.74 16 4 C 0.07 1.19 4.30 31.12 0.13 1.33 16 5 C -0.16 -2.84 7.42 31.12 0.23 -2.61 16 6 C 0.11 2.56 4.13 45.52 0.19 2.75 16 7 N -0.99 -26.70 3.33 -513.77 -1.71 -28.41 16 8 C 0.08 1.80 9.18 127.77 1.17 2.97 16 9 S 2.61 95.87 4.41 -56.49 -0.25 95.62 16 10 O -0.99 -41.65 14.75 -127.65 -1.88 -43.53 16 11 O -0.99 -40.73 14.36 -127.65 -1.83 -42.56 16 12 C -0.58 -22.17 5.12 71.98 0.37 -21.80 16 13 C 0.07 3.37 0.52 -52.93 -0.03 3.34 16 14 C -0.16 -8.04 7.78 71.98 0.56 -7.48 16 15 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 16 C -0.52 -26.91 8.01 25.60 0.21 -26.71 16 17 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 18 C 0.02 0.89 5.15 84.66 0.44 1.33 16 19 N -0.91 -50.47 9.35 21.45 0.20 -50.27 16 20 Si 0.95 42.02 29.54 68.60 2.03 44.05 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 C -0.15 -2.95 7.50 31.12 0.23 -2.72 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 1.43 7.88 -2.39 -0.02 1.41 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.10 1.75 5.96 -2.39 -0.01 1.73 16 33 H 0.12 2.85 7.24 -2.39 -0.02 2.83 16 34 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.07 1.61 7.87 -2.39 -0.02 1.59 16 36 H 0.10 1.67 5.78 -2.38 -0.01 1.65 16 37 H 0.14 4.56 8.14 -2.39 -0.02 4.54 16 38 H 0.13 4.55 8.14 -2.39 -0.02 4.53 16 39 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 40 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 41 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 44 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 45 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.09 1.93 7.47 -2.39 -0.02 1.91 16 47 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -67.26 370.11 1.22 -66.04 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.94 Total: 24.62 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 5.27 Total: -56.82 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -1.51 Total: -78.68 kcal Atomic # 8 Polarization: -89.58 SS G_CDS: -5.26 Total: -94.83 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 16 Polarization: 95.87 SS G_CDS: -0.25 Total: 95.62 kcal Total: -67.26 1.22 -66.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451567260.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.320 kcal (2) G-P(sol) polarization free energy of solvation -67.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds