Wall clock time and date at job start Tue Mar 31 2020 13:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42898 * 109.47521 * 2 1 4 4 C 1.42896 * 114.00482 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47075 * 29.99805 * 4 3 2 6 6 C 1.52996 * 109.46885 * 270.00062 * 4 3 2 7 7 C 1.53002 * 109.46972 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47415 * 59.99860 * 7 6 4 9 9 C 1.53006 * 109.47164 * 300.00027 * 8 7 6 10 10 C 1.52997 * 109.47412 * 149.99976 * 4 3 2 11 11 H 1.09000 * 109.47140 * 59.99868 * 10 4 3 12 12 N 1.46506 * 109.47277 * 300.00069 * 10 4 3 13 13 S 1.65599 * 120.00285 * 144.99457 * 12 10 4 14 14 O 1.42100 * 104.27788 * 181.07251 * 13 12 10 15 15 O 1.42101 * 104.27803 * 308.93367 * 13 12 10 16 16 C 1.81402 * 104.44675 * 65.00391 * 13 12 10 17 17 C 1.52996 * 109.47117 * 179.97438 * 16 13 12 18 18 C 1.53008 * 109.47041 * 179.97438 * 17 16 13 19 19 C 1.50697 * 109.46959 * 179.97438 * 18 17 16 20 20 H 1.07994 * 120.00137 * 0.02562 * 19 18 17 21 21 C 1.37877 * 119.99811 * 180.02562 * 19 18 17 22 22 N 1.31524 * 120.00134 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00205 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.46841 * 89.99941 * 23 21 19 25 25 H 1.48504 * 109.47090 * 210.00310 * 23 21 19 26 26 H 1.48504 * 109.46770 * 329.99965 * 23 21 19 27 27 H 1.09000 * 109.47143 * 300.00054 * 1 2 3 28 28 H 1.09004 * 109.47314 * 59.99676 * 1 2 3 29 29 H 1.08997 * 109.47627 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47143 * 239.99946 * 2 1 3 31 31 H 1.08999 * 109.47357 * 119.99840 * 2 1 3 32 32 H 1.08992 * 109.47534 * 60.00076 * 6 4 3 33 33 H 1.08996 * 109.47134 * 299.99271 * 6 4 3 34 34 H 1.09000 * 109.46986 * 299.99742 * 7 6 4 35 35 H 1.09001 * 109.47601 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.46922 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47140 * 59.99976 * 8 7 6 38 38 H 1.08993 * 109.46955 * 180.02562 * 9 8 7 39 39 H 1.09000 * 109.47050 * 300.00004 * 9 8 7 40 40 H 0.97005 * 119.99901 * 325.00651 * 12 10 4 41 41 H 1.09005 * 109.47415 * 300.00071 * 16 13 12 42 42 H 1.09000 * 109.47140 * 59.99642 * 16 13 12 43 43 H 1.08995 * 109.47106 * 299.99842 * 17 16 13 44 44 H 1.09002 * 109.46960 * 60.00306 * 17 16 13 45 45 H 1.08994 * 109.47089 * 300.00547 * 18 17 16 46 46 H 1.09002 * 109.46701 * 60.00505 * 18 17 16 47 47 H 0.96991 * 120.00112 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6016 -0.5147 6 6 3.9398 1.5001 1.4417 7 6 5.4650 1.6216 1.4411 8 6 5.8740 2.9075 0.7201 9 6 5.3650 2.8675 -0.7223 10 6 3.8404 2.7457 -0.7218 11 1 3.4081 3.6042 -0.2077 12 7 3.3530 2.7074 -2.1029 13 16 2.8472 4.1006 -2.8414 14 8 2.4301 3.6809 -4.1334 15 8 1.9245 4.6694 -1.9225 16 6 4.3427 5.1210 -2.9556 17 6 4.0020 6.4517 -3.6293 18 6 5.2633 7.3126 -3.7250 19 6 4.9278 8.6231 -4.3891 20 1 3.9161 8.8222 -4.7103 21 6 5.9124 9.5678 -4.5865 22 7 5.6195 10.7118 -5.1657 23 14 7.6625 9.2230 -4.0316 24 1 8.4125 8.5717 -5.1354 25 1 8.3270 10.5002 -3.6675 26 1 7.6389 8.3231 -2.8506 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.6482 0.5842 1.9555 33 1 3.5077 2.3586 1.9558 34 1 5.8976 0.7634 0.9268 35 1 5.8278 1.6497 2.4686 36 1 6.9606 2.9938 0.7193 37 1 5.4414 3.7657 1.2343 38 1 5.6568 3.7834 -1.2361 39 1 5.7976 2.0093 -1.2365 40 1 3.3264 1.8659 -2.5847 41 1 4.7317 5.3090 -1.9548 42 1 5.0954 4.5978 -3.5455 43 1 3.6134 6.2633 -4.6300 44 1 3.2492 6.9751 -3.0397 45 1 5.6515 7.5008 -2.7241 46 1 6.0163 6.7894 -4.3144 47 1 6.3121 11.3765 -5.3042 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452063001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:19 Heat of formation + Delta-G solvation = -152.507940 kcal Electronic energy + Delta-G solvation = -26058.525613 eV Core-core repulsion = 22367.292030 eV Total energy + Delta-G solvation = -3691.233582 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.86362 -37.11460 -36.81262 -35.72818 -34.80811 -34.43483 -32.22216 -31.77605 -30.06342 -28.47890 -28.35589 -23.77801 -23.33923 -22.56452 -22.48240 -20.55648 -20.41263 -19.13751 -17.67572 -17.14402 -16.88624 -16.63589 -15.97747 -15.79020 -15.44671 -15.03914 -14.42914 -14.27012 -14.20465 -14.00988 -13.78466 -13.49634 -13.29535 -12.91387 -12.58094 -12.37949 -12.18731 -12.13075 -11.97136 -11.85803 -11.80802 -11.77145 -11.60089 -11.55124 -11.29505 -11.13743 -11.01064 -10.95206 -10.90375 -10.61814 -10.08584 -9.92026 -9.83787 -9.69387 -9.34392 -9.22873 -8.58317 -6.07881 -4.07077 0.44849 2.81812 3.26480 3.29011 3.33912 3.35842 3.95264 4.22853 4.36430 4.40487 4.45909 4.58983 4.70795 4.73394 4.81474 4.84531 4.90759 4.97470 5.02754 5.04317 5.07459 5.13284 5.25595 5.30006 5.34473 5.41768 5.53806 5.63448 5.66683 5.69499 5.72121 5.81147 5.86371 5.88772 5.93680 6.07867 6.15967 6.28099 6.68079 6.88788 7.00306 7.13264 7.27444 7.71706 8.48478 8.96891 9.53185 11.05495 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003347 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.706508 B = 8363.176366 C = 9559.537849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.370 6.370 4 C 0.091 3.909 5 H 0.065 0.935 6 C -0.141 4.141 7 C -0.118 4.118 8 C -0.122 4.122 9 C -0.146 4.146 10 C 0.152 3.848 11 H 0.102 0.898 12 N -1.113 6.113 13 S 2.602 3.398 14 O -0.963 6.963 15 O -0.954 6.954 16 C -0.620 4.620 17 C -0.097 4.097 18 C -0.004 4.004 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.067 3.933 22 N -0.901 5.901 23 Si 0.880 3.120 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.266 1.266 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.413 0.587 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.015 0.985 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -25.165 14.453 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.289 6.289 4 C 0.032 3.968 5 H 0.083 0.917 6 C -0.180 4.180 7 C -0.156 4.156 8 C -0.161 4.161 9 C -0.185 4.185 10 C 0.044 3.956 11 H 0.120 0.880 12 N -0.869 5.869 13 S 2.697 3.303 14 O -0.953 6.953 15 O -0.944 6.944 16 C -0.751 4.751 17 C -0.137 4.137 18 C -0.042 4.042 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.134 4.134 22 N -0.539 5.539 23 Si 0.708 3.292 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.190 1.190 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.246 0.754 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.096 -24.494 14.207 28.393 hybrid contribution 1.894 -0.626 0.139 2.000 sum -0.201 -25.121 14.346 28.929 Atomic orbital electron populations 1.21748 0.93707 1.02064 1.03509 1.22506 0.95780 0.84048 0.99698 1.88039 1.20059 1.25937 1.94913 1.22273 0.81852 0.97323 0.95375 0.91691 1.22060 0.96103 1.03232 0.96600 1.21528 0.94894 0.98173 1.00984 1.21561 1.01310 0.98280 0.94903 1.22242 0.94408 1.03838 0.98010 1.20917 0.93588 0.99541 0.81536 0.88050 1.55647 1.83479 1.25675 1.22107 1.05263 0.77079 0.74252 0.73690 1.93579 1.80758 1.80387 1.40578 1.93589 1.58759 1.78219 1.63831 1.30750 1.20830 1.12999 1.10498 1.21309 1.02140 0.90536 0.99675 1.19524 0.92416 0.95206 0.97093 1.21142 0.97816 0.98589 1.38910 0.90722 1.25031 0.98936 0.94880 0.94588 1.69913 1.33803 1.07016 1.43191 0.86774 0.85034 0.77798 0.79635 1.20251 1.21292 1.19033 0.91771 0.91596 0.91266 0.93534 0.93623 0.91453 0.90483 0.91837 0.91334 0.91043 0.91112 0.90166 0.90742 0.75399 0.85445 0.85260 0.91016 0.90957 0.96186 0.96643 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.28 37.16 0.38 -0.81 16 2 C 0.06 0.46 6.47 37.16 0.24 0.70 16 3 O -0.37 -4.04 9.85 -35.23 -0.35 -4.39 16 4 C 0.09 0.79 2.19 -26.73 -0.06 0.74 16 5 H 0.07 0.47 7.79 -51.93 -0.40 0.06 16 6 C -0.14 -1.02 5.54 -26.73 -0.15 -1.17 16 7 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 8 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 9 C -0.15 -1.15 5.49 -26.75 -0.15 -1.30 16 10 C 0.15 1.49 2.38 -67.96 -0.16 1.33 16 11 H 0.10 1.13 7.48 -51.93 -0.39 0.74 16 12 N -1.11 -12.12 5.23 -4.91 -0.03 -12.14 16 13 S 2.60 38.61 5.44 -107.50 -0.58 38.02 16 14 O -0.96 -17.11 18.08 -57.54 -1.04 -18.15 16 15 O -0.95 -17.34 17.39 -57.54 -1.00 -18.34 16 16 C -0.62 -8.97 5.22 37.16 0.19 -8.78 16 17 C -0.10 -1.91 5.16 -26.73 -0.14 -2.04 16 18 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 19 C -0.53 -15.03 9.66 -34.44 -0.33 -15.36 16 20 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 21 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 23 Si 0.88 21.37 27.47 -169.99 -4.67 16.70 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.09 6.54 56.52 0.37 -5.72 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 31 H 0.05 0.30 7.87 -51.93 -0.41 -0.10 16 32 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.66 5.78 -51.93 -0.30 0.36 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.41 3.72 8.80 -34.47 -0.30 3.42 16 41 H 0.13 1.58 6.77 -51.92 -0.35 1.23 16 42 H 0.13 1.59 8.14 -51.92 -0.42 1.16 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 46 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 381.11 15.07 5.74 5.74 Total: -1.00 -36.23 381.11 -10.26 -46.48 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -8.41 Total: 0.01 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -0.70 Total: -26.92 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.75 Total: -39.16 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -2.39 Total: -40.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Atomic # 16 Polarization: 38.61 SS G_CDS: -0.58 Total: 38.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.23 -10.26 -46.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452063001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.024 kcal (2) G-P(sol) polarization free energy of solvation -36.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds