Wall clock time and date at job start Tue Mar 31 2020 13:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46841 * 2 1 4 4 C 1.42899 * 114.00185 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.01495 * 29.93224 * 4 3 2 6 6 C 1.53879 * 110.03172 * 268.54436 * 4 3 2 7 7 C 1.54263 * 106.59704 * 240.70934 * 6 4 3 8 8 C 1.54890 * 104.19817 * 336.39210 * 7 6 4 9 9 C 1.54464 * 110.12712 * 151.21786 * 4 3 2 10 10 H 1.09001 * 110.40382 * 24.14245 * 9 4 3 11 11 N 1.46507 * 110.65744 * 261.43719 * 9 4 3 12 12 S 1.65599 * 119.99647 * 148.78460 * 11 9 4 13 13 O 1.42102 * 104.27651 * 181.07097 * 12 11 9 14 14 O 1.42101 * 104.28147 * 308.92704 * 12 11 9 15 15 C 1.81408 * 104.45056 * 64.99974 * 12 11 9 16 16 C 1.53004 * 109.46927 * 179.97438 * 15 12 11 17 17 C 1.52991 * 109.47116 * 300.00099 * 16 15 12 18 18 C 1.53000 * 109.46910 * 60.00252 * 16 15 12 19 19 C 1.50700 * 109.46635 * 179.97438 * 16 15 12 20 20 H 1.07994 * 120.00116 * 357.70159 * 19 16 15 21 21 C 1.37878 * 119.99839 * 177.69205 * 19 16 15 22 22 N 1.31518 * 119.99664 * 6.59060 * 21 19 16 23 23 Si 1.86797 * 120.00135 * 186.58515 * 21 19 16 24 24 H 1.48498 * 109.47368 * 84.99777 * 23 21 19 25 25 H 1.48502 * 109.47186 * 204.99920 * 23 21 19 26 26 H 1.48498 * 109.46896 * 324.99390 * 23 21 19 27 27 H 1.08998 * 109.46873 * 60.00157 * 1 2 3 28 28 H 1.08994 * 109.46764 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47307 * 300.00651 * 1 2 3 30 30 H 1.08995 * 109.47447 * 239.99840 * 2 1 3 31 31 H 1.08994 * 109.47026 * 119.99376 * 2 1 3 32 32 H 1.09002 * 110.02768 * 121.42849 * 6 4 3 33 33 H 1.08993 * 110.03145 * 359.97438 * 6 4 3 34 34 H 1.08998 * 110.48564 * 217.70831 * 7 6 4 35 35 H 1.09005 * 110.59522 * 95.12326 * 7 6 4 36 36 H 1.09000 * 110.75557 * 156.25722 * 8 7 6 37 37 H 1.09001 * 110.75253 * 279.44055 * 8 7 6 38 38 H 0.96996 * 120.00388 * 328.78620 * 11 9 4 39 39 H 1.08994 * 109.46736 * 299.99754 * 15 12 11 40 40 H 1.08995 * 109.46495 * 59.99841 * 15 12 11 41 41 H 1.09000 * 109.47570 * 66.67100 * 17 16 15 42 42 H 1.09005 * 109.47114 * 186.67113 * 17 16 15 43 43 H 1.09001 * 109.47381 * 306.66672 * 17 16 15 44 44 H 1.09001 * 109.47273 * 59.99392 * 18 16 15 45 45 H 1.09000 * 109.46772 * 179.97438 * 18 16 15 46 46 H 1.09001 * 109.46751 * 299.99710 * 18 16 15 47 47 H 0.97003 * 119.99391 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8727 0.6050 -0.5120 6 6 3.9540 1.5383 1.4444 7 6 4.6797 2.8930 1.5778 8 6 5.0779 3.2552 0.1254 9 6 3.8599 2.7695 -0.6989 10 1 3.0548 3.5032 -0.6584 11 7 4.2505 2.5109 -2.0870 12 16 4.0107 3.6708 -3.2444 13 8 4.4755 3.0693 -4.4449 14 8 2.6477 4.0424 -3.0912 15 6 5.1014 5.0341 -2.7517 16 6 4.9693 6.1812 -3.7556 17 6 5.3664 5.6882 -5.1484 18 6 3.5202 6.6714 -3.7820 19 6 5.8749 7.3139 -3.3460 20 1 6.4557 7.2398 -2.4385 21 6 5.9620 8.4449 -4.1298 22 7 5.1615 8.5921 -5.1629 23 14 7.2168 9.7679 -3.7243 24 1 8.5230 9.4158 -4.3367 25 1 6.7530 11.0718 -4.2630 26 1 7.3718 9.8682 -2.2509 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 4.6504 0.7214 1.6340 33 1 3.1213 1.4905 2.1461 34 1 5.5670 2.7906 2.2024 35 1 4.0097 3.6481 1.9892 36 1 5.2122 4.3316 0.0187 37 1 5.9820 2.7234 -0.1712 38 1 4.6495 1.6603 -2.3282 39 1 4.8187 5.3850 -1.7593 40 1 6.1337 4.6849 -2.7333 41 1 4.6406 4.9520 -5.4939 42 1 5.3867 6.5306 -5.8399 43 1 6.3548 5.2308 -5.1039 44 1 3.2373 7.0226 -2.7897 45 1 3.4262 7.4889 -4.4969 46 1 2.8649 5.8522 -4.0780 47 1 5.2226 9.3880 -5.7141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452069485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:24 Heat of formation + Delta-G solvation = -136.063641 kcal Electronic energy + Delta-G solvation = -26803.510922 eV Core-core repulsion = 23112.990418 eV Total energy + Delta-G solvation = -3690.520504 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.45198 -36.71886 -36.39962 -36.25362 -35.25646 -33.41612 -31.66634 -31.33689 -27.96706 -26.90940 -26.51632 -25.69807 -25.21038 -23.03075 -20.92142 -20.71308 -19.60425 -18.86447 -17.59651 -16.76203 -16.59946 -15.90511 -15.66803 -15.29471 -15.04493 -14.82379 -14.73536 -13.90185 -13.55506 -13.34434 -13.10043 -12.97533 -12.92244 -12.49660 -12.45152 -12.26131 -11.97878 -11.76982 -11.43700 -11.39085 -11.37515 -11.31641 -11.11067 -11.01263 -10.91164 -10.83428 -10.67949 -10.63854 -10.36266 -10.28046 -10.08185 -9.81763 -9.64097 -9.55951 -9.15928 -8.68446 -8.36819 -6.02943 -4.14395 0.90180 3.18184 3.26701 3.33766 3.35066 3.52064 4.29248 4.32901 4.40543 4.43090 4.74015 4.85205 4.87728 4.99277 5.06984 5.17161 5.19031 5.21873 5.29140 5.34342 5.36765 5.51245 5.56281 5.69475 5.73154 5.74647 5.78051 5.84262 5.93854 5.99198 6.05968 6.26526 6.40960 6.70721 6.80685 6.93473 7.04807 7.12425 7.14846 7.33367 7.50678 7.68738 7.99219 8.11518 8.34938 8.83907 9.50627 10.98167 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003753 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.841766 B = 7458.421687 C = 8166.458546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.084 3.916 5 H 0.069 0.931 6 C -0.145 4.145 7 C -0.119 4.119 8 C -0.149 4.149 9 C 0.146 3.854 10 H 0.111 0.889 11 N -1.122 6.122 12 S 2.591 3.409 13 O -0.967 6.967 14 O -0.960 6.960 15 C -0.581 4.581 16 C 0.082 3.918 17 C -0.161 4.161 18 C -0.164 4.164 19 C -0.502 4.502 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.882 5.882 23 Si 0.895 3.105 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.275 1.275 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.409 0.591 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.026 0.974 42 H 0.094 0.906 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.097 0.903 46 H 0.027 0.973 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.381 -15.701 12.752 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.293 6.293 4 C 0.024 3.976 5 H 0.087 0.913 6 C -0.184 4.184 7 C -0.157 4.157 8 C -0.188 4.188 9 C 0.038 3.962 10 H 0.129 0.871 11 N -0.877 5.877 12 S 2.689 3.311 13 O -0.957 6.957 14 O -0.950 6.950 15 C -0.715 4.715 16 C 0.080 3.920 17 C -0.219 4.219 18 C -0.222 4.222 19 C -0.541 4.541 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.520 5.520 23 Si 0.723 3.277 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.200 1.200 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.242 0.758 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.045 0.955 42 H 0.112 0.888 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.116 0.884 46 H 0.046 0.954 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.269 -15.359 11.897 19.701 hybrid contribution 1.576 0.299 0.592 1.710 sum -1.693 -15.060 12.489 19.638 Atomic orbital electron populations 1.21750 0.93749 1.02051 1.03440 1.22499 0.95739 0.84063 0.99759 1.88014 1.20301 1.26105 1.94888 1.23025 0.81620 0.97699 0.95236 0.91338 1.22647 1.00622 0.98444 0.96654 1.22249 1.00277 0.96670 0.96551 1.23114 0.98090 1.02684 0.94919 1.21705 0.96838 0.97254 0.80376 0.87071 1.55908 1.79398 1.31657 1.20711 1.05676 0.76534 0.75583 0.73266 1.93553 1.83136 1.75638 1.43403 1.93555 1.32386 1.83445 1.85611 1.30588 1.14128 1.15764 1.10986 1.17926 0.95241 0.89759 0.89079 1.22208 0.98621 1.00938 1.00085 1.22309 0.95095 1.02511 1.02258 1.20931 1.24701 1.00015 1.08483 0.92277 1.24939 0.95701 0.97913 0.95184 1.69819 1.36543 1.28160 1.17481 0.86567 0.81657 0.80942 0.78558 1.20582 1.21220 1.20009 0.91526 0.91301 0.91848 0.93461 0.93609 0.91250 0.90453 0.91117 0.90839 0.89784 0.90204 0.75814 0.86415 0.86265 0.95548 0.88765 0.94610 0.94494 0.88448 0.95441 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.16 0.38 -0.95 16 2 C 0.06 0.54 6.50 37.16 0.24 0.78 16 3 O -0.37 -4.73 9.90 -35.23 -0.35 -5.08 16 4 C 0.08 0.91 3.12 -25.50 -0.08 0.84 16 5 H 0.07 0.65 7.47 -51.93 -0.39 0.27 16 6 C -0.15 -1.26 6.61 -25.61 -0.17 -1.43 16 7 C -0.12 -1.05 6.83 -25.07 -0.17 -1.22 16 8 C -0.15 -1.56 6.46 -24.74 -0.16 -1.72 16 9 C 0.15 1.86 3.16 -66.16 -0.21 1.65 16 10 H 0.11 1.62 7.50 -51.93 -0.39 1.23 16 11 N -1.12 -15.64 5.49 -3.39 -0.02 -15.66 16 12 S 2.59 48.92 4.48 -107.50 -0.48 48.43 16 13 O -0.97 -20.60 15.84 -57.54 -0.91 -21.51 16 14 O -0.96 -20.91 15.05 -57.54 -0.87 -21.77 16 15 C -0.58 -11.26 4.91 37.16 0.18 -11.07 16 16 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 17 C -0.16 -3.98 7.58 37.15 0.28 -3.70 16 18 C -0.16 -4.08 7.79 37.16 0.29 -3.79 16 19 C -0.50 -13.11 8.01 -34.44 -0.28 -13.38 16 20 H 0.06 1.49 7.75 -52.49 -0.41 1.09 16 21 C 0.06 1.71 5.09 -17.82 -0.09 1.62 16 22 N -0.88 -24.11 9.39 55.43 0.52 -23.59 16 23 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.43 8.10 -51.93 -0.42 0.01 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.67 7.95 -51.93 -0.41 0.26 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.92 7.03 -51.93 -0.36 0.55 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 4.73 8.56 -34.47 -0.29 4.44 16 39 H 0.12 2.05 7.02 -51.93 -0.36 1.69 16 40 H 0.12 2.08 8.14 -51.93 -0.42 1.65 16 41 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 42 H 0.09 2.51 5.99 -51.93 -0.31 2.20 16 43 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.10 2.61 6.01 -51.93 -0.31 2.30 16 46 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 47 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 LS Contribution 370.54 15.07 5.58 5.58 Total: -1.00 -32.30 370.54 -9.45 -41.75 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.04 Total: 6.78 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: 0.14 Total: -30.47 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.50 Total: -39.25 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -2.13 Total: -48.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 48.92 SS G_CDS: -0.48 Total: 48.43 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.30 -9.45 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452069485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.317 kcal (2) G-P(sol) polarization free energy of solvation -32.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds