Wall clock time and date at job start Tue Mar 31 2020 13:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42899 * 109.46841 * 2 1 4 4 C 1.42899 * 114.00185 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.01495 * 29.93224 * 4 3 2 6 6 C 1.53879 * 110.03172 * 268.54436 * 4 3 2 7 7 C 1.54263 * 106.59704 * 240.70934 * 6 4 3 8 8 C 1.54890 * 104.19817 * 336.39210 * 7 6 4 9 9 C 1.54464 * 110.12712 * 151.21786 * 4 3 2 10 10 H 1.09001 * 110.40382 * 24.14245 * 9 4 3 11 11 N 1.46507 * 110.65744 * 261.43719 * 9 4 3 12 12 S 1.65599 * 119.99647 * 148.78460 * 11 9 4 13 13 O 1.42102 * 104.27651 * 181.07097 * 12 11 9 14 14 O 1.42101 * 104.28147 * 308.92704 * 12 11 9 15 15 C 1.81408 * 104.45056 * 64.99974 * 12 11 9 16 16 C 1.53004 * 109.46927 * 179.97438 * 15 12 11 17 17 C 1.52991 * 109.47116 * 300.00099 * 16 15 12 18 18 C 1.53000 * 109.46910 * 60.00252 * 16 15 12 19 19 C 1.50700 * 109.46635 * 179.97438 * 16 15 12 20 20 H 1.07994 * 120.00116 * 357.70159 * 19 16 15 21 21 C 1.37878 * 119.99839 * 177.69205 * 19 16 15 22 22 N 1.31518 * 119.99664 * 6.59060 * 21 19 16 23 23 Si 1.86797 * 120.00135 * 186.58515 * 21 19 16 24 24 H 1.48498 * 109.47368 * 84.99777 * 23 21 19 25 25 H 1.48502 * 109.47186 * 204.99920 * 23 21 19 26 26 H 1.48498 * 109.46896 * 324.99390 * 23 21 19 27 27 H 1.08998 * 109.46873 * 60.00157 * 1 2 3 28 28 H 1.08994 * 109.46764 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47307 * 300.00651 * 1 2 3 30 30 H 1.08995 * 109.47447 * 239.99840 * 2 1 3 31 31 H 1.08994 * 109.47026 * 119.99376 * 2 1 3 32 32 H 1.09002 * 110.02768 * 121.42849 * 6 4 3 33 33 H 1.08993 * 110.03145 * 359.97438 * 6 4 3 34 34 H 1.08998 * 110.48564 * 217.70831 * 7 6 4 35 35 H 1.09005 * 110.59522 * 95.12326 * 7 6 4 36 36 H 1.09000 * 110.75557 * 156.25722 * 8 7 6 37 37 H 1.09001 * 110.75253 * 279.44055 * 8 7 6 38 38 H 0.96996 * 120.00388 * 328.78620 * 11 9 4 39 39 H 1.08994 * 109.46736 * 299.99754 * 15 12 11 40 40 H 1.08995 * 109.46495 * 59.99841 * 15 12 11 41 41 H 1.09000 * 109.47570 * 66.67100 * 17 16 15 42 42 H 1.09005 * 109.47114 * 186.67113 * 17 16 15 43 43 H 1.09001 * 109.47381 * 306.66672 * 17 16 15 44 44 H 1.09001 * 109.47273 * 59.99392 * 18 16 15 45 45 H 1.09000 * 109.46772 * 179.97438 * 18 16 15 46 46 H 1.09001 * 109.46751 * 299.99710 * 18 16 15 47 47 H 0.97003 * 119.99391 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8727 0.6050 -0.5120 6 6 3.9540 1.5383 1.4444 7 6 4.6797 2.8930 1.5778 8 6 5.0779 3.2552 0.1254 9 6 3.8599 2.7695 -0.6989 10 1 3.0548 3.5032 -0.6584 11 7 4.2505 2.5109 -2.0870 12 16 4.0107 3.6708 -3.2444 13 8 4.4755 3.0693 -4.4449 14 8 2.6477 4.0424 -3.0912 15 6 5.1014 5.0341 -2.7517 16 6 4.9693 6.1812 -3.7556 17 6 5.3664 5.6882 -5.1484 18 6 3.5202 6.6714 -3.7820 19 6 5.8749 7.3139 -3.3460 20 1 6.4557 7.2398 -2.4385 21 6 5.9620 8.4449 -4.1298 22 7 5.1615 8.5921 -5.1629 23 14 7.2168 9.7679 -3.7243 24 1 8.5230 9.4158 -4.3367 25 1 6.7530 11.0718 -4.2630 26 1 7.3718 9.8682 -2.2509 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 4.6504 0.7214 1.6340 33 1 3.1213 1.4905 2.1461 34 1 5.5670 2.7906 2.2024 35 1 4.0097 3.6481 1.9892 36 1 5.2122 4.3316 0.0187 37 1 5.9820 2.7234 -0.1712 38 1 4.6495 1.6603 -2.3282 39 1 4.8187 5.3850 -1.7593 40 1 6.1337 4.6849 -2.7333 41 1 4.6406 4.9520 -5.4939 42 1 5.3867 6.5306 -5.8399 43 1 6.3548 5.2308 -5.1039 44 1 3.2373 7.0226 -2.7897 45 1 3.4262 7.4889 -4.4969 46 1 2.8649 5.8522 -4.0780 47 1 5.2226 9.3880 -5.7141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452069485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:24 Heat of formation + Delta-G solvation = -158.034866 kcal Electronic energy + Delta-G solvation = -26804.463666 eV Core-core repulsion = 23112.990418 eV Total energy + Delta-G solvation = -3691.473248 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.165 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.29199 -38.13071 -38.11093 -37.48852 -36.89656 -34.43958 -33.62826 -32.06070 -28.82392 -28.27261 -27.70664 -27.68060 -27.22564 -23.75131 -21.83087 -21.61095 -21.21039 -20.37038 -18.96647 -17.95169 -17.75504 -17.55020 -16.91173 -16.62039 -16.50975 -16.18462 -15.82354 -15.03305 -14.84200 -14.63740 -14.43377 -14.35118 -14.09390 -13.83076 -13.74284 -13.43213 -13.15455 -13.07263 -13.04050 -12.85703 -12.79388 -12.64224 -12.51308 -12.26312 -12.21719 -12.13296 -12.08121 -12.04361 -11.85719 -11.66959 -11.56225 -11.36552 -11.33957 -10.77284 -10.60415 -10.38259 -10.15125 -8.02368 -6.20410 -0.61259 1.45836 1.47312 1.55375 1.86625 2.45428 2.71742 2.87383 3.19682 3.30009 3.49282 3.67831 3.97113 4.02495 4.14857 4.18162 4.25552 4.28427 4.33917 4.50718 4.51318 4.57836 4.58861 4.63316 4.74459 4.83855 4.86205 4.89031 4.98028 5.03896 5.05070 5.08727 5.12693 5.22873 5.27904 5.32175 5.38994 5.46596 5.49363 5.65712 5.96844 6.10280 6.12503 6.35129 6.36388 6.84328 7.47617 8.97549 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.003753 C = 0.003428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.841766 B = 7458.421687 C = 8166.458546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.404 6.404 4 C 0.080 3.920 5 H 0.084 0.916 6 C -0.137 4.137 7 C -0.117 4.117 8 C -0.148 4.148 9 C 0.134 3.866 10 H 0.087 0.913 11 N -1.105 6.105 12 S 2.608 3.392 13 O -0.994 6.994 14 O -0.994 6.994 15 C -0.580 4.580 16 C 0.070 3.930 17 C -0.157 4.157 18 C -0.160 4.160 19 C -0.516 4.516 20 H 0.066 0.934 21 C 0.017 3.983 22 N -0.908 5.908 23 Si 0.955 3.045 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.266 1.266 27 H 0.046 0.954 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.423 0.577 39 H 0.136 0.864 40 H 0.142 0.858 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.028 0.972 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.882 -17.176 14.986 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.324 6.324 4 C 0.021 3.979 5 H 0.102 0.898 6 C -0.176 4.176 7 C -0.155 4.155 8 C -0.188 4.188 9 C 0.026 3.974 10 H 0.105 0.895 11 N -0.864 5.864 12 S 2.706 3.294 13 O -0.984 6.984 14 O -0.984 6.984 15 C -0.713 4.713 16 C 0.068 3.932 17 C -0.215 4.215 18 C -0.218 4.218 19 C -0.555 4.555 20 H 0.084 0.916 21 C -0.182 4.182 22 N -0.547 5.547 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.191 1.191 27 H 0.065 0.935 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.259 0.741 39 H 0.154 0.846 40 H 0.160 0.840 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.091 0.909 46 H 0.047 0.953 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.765 -16.846 14.133 22.060 hybrid contribution 1.052 0.703 -0.087 1.268 sum -0.712 -16.143 14.046 21.410 Atomic orbital electron populations 1.21788 0.93525 1.03300 1.02403 1.22704 0.96067 0.83066 1.00924 1.87984 1.21354 1.27956 1.95141 1.23149 0.81179 0.96944 0.96657 0.89811 1.22616 1.00986 0.99126 0.94845 1.22267 1.01041 0.96610 0.95580 1.23140 0.97572 1.02458 0.95597 1.21952 0.97504 0.98260 0.79680 0.89529 1.55390 1.79314 1.31028 1.20659 1.04849 0.75604 0.75725 0.73221 1.93508 1.83291 1.76092 1.45512 1.93512 1.34385 1.84263 1.86217 1.30489 1.15856 1.14520 1.10468 1.17919 0.94132 0.91230 0.89931 1.22147 0.99157 0.99983 1.00240 1.22241 0.96223 1.01747 1.01572 1.21285 1.24906 1.00625 1.08683 0.91553 1.25693 0.97273 1.00065 0.95205 1.69965 1.37779 1.28598 1.18325 0.85621 0.79395 0.78241 0.78665 1.20218 1.21532 1.19066 0.93458 0.88935 0.91958 0.93193 0.91410 0.88898 0.90465 0.89060 0.91405 0.90440 0.88536 0.74099 0.84583 0.83972 0.95550 0.91127 0.93708 0.94264 0.90857 0.95296 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.05 0.85 6.50 71.98 0.47 1.32 16 3 O -0.40 -9.78 9.90 -148.98 -1.48 -11.25 16 4 C 0.08 1.57 3.12 31.39 0.10 1.67 16 5 H 0.08 1.35 7.47 -2.38 -0.02 1.34 16 6 C -0.14 -1.95 6.61 31.32 0.21 -1.75 16 7 C -0.12 -1.72 6.83 31.67 0.22 -1.50 16 8 C -0.15 -2.74 6.46 31.88 0.21 -2.53 16 9 C 0.13 3.20 3.16 46.13 0.15 3.35 16 10 H 0.09 2.52 7.50 -2.39 -0.02 2.50 16 11 N -1.10 -29.19 5.49 -164.64 -0.90 -30.09 16 12 S 2.61 97.28 4.48 -56.49 -0.25 97.02 16 13 O -0.99 -41.98 15.84 -127.65 -2.02 -44.00 16 14 O -0.99 -43.83 15.05 -127.65 -1.92 -45.75 16 15 C -0.58 -21.81 4.91 71.98 0.35 -21.45 16 16 C 0.07 3.38 0.52 -52.93 -0.03 3.35 16 17 C -0.16 -7.86 7.58 71.98 0.55 -7.32 16 18 C -0.16 -8.12 7.79 71.98 0.56 -7.56 16 19 C -0.52 -26.63 8.01 25.60 0.20 -26.42 16 20 H 0.07 3.25 7.75 -2.91 -0.02 3.23 16 21 C 0.02 0.90 5.09 84.65 0.43 1.33 16 22 N -0.91 -50.50 9.39 21.45 0.20 -50.30 16 23 Si 0.95 41.88 29.54 68.60 2.03 43.90 16 24 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.08 1.13 7.95 -2.39 -0.02 1.11 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 1.53 7.03 -2.39 -0.02 1.51 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.42 8.91 8.56 -96.75 -0.83 8.08 16 39 H 0.14 4.56 7.02 -2.39 -0.02 4.54 16 40 H 0.14 4.64 8.14 -2.39 -0.02 4.62 16 41 H 0.03 1.27 5.96 -2.39 -0.01 1.25 16 42 H 0.07 3.84 5.99 -2.38 -0.01 3.83 16 43 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 4.06 6.01 -2.39 -0.01 4.04 16 46 H 0.03 1.41 5.46 -2.39 -0.01 1.40 16 47 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -69.86 370.54 -0.08 -69.94 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.12 Total: 29.82 kcal Atomic # 6 Polarization: -63.44 SS G_CDS: 4.15 Total: -59.29 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -0.70 Total: -80.39 kcal Atomic # 8 Polarization: -95.59 SS G_CDS: -5.42 Total: -101.01 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Atomic # 16 Polarization: 97.28 SS G_CDS: -0.25 Total: 97.02 kcal Total: -69.86 -0.08 -69.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452069485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.095 kcal (2) G-P(sol) polarization free energy of solvation -69.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds