Wall clock time and date at job start Tue Mar 31 2020 11:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47182 * 2 1 4 4 O 1.42900 * 109.46602 * 119.99450 * 2 1 3 5 5 C 1.42896 * 114.00209 * 270.00068 * 4 2 1 6 6 C 1.53004 * 109.47017 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.82563 * 305.56565 * 6 5 4 8 8 C 1.54383 * 109.82931 * 184.58888 * 6 5 4 9 9 C 1.55305 * 102.25378 * 219.12915 * 8 6 5 10 10 C 1.54947 * 100.94054 * 34.13509 * 9 8 6 11 11 O 1.43233 * 109.83053 * 66.45844 * 6 5 4 12 12 C 1.50693 * 109.47474 * 239.99924 * 2 1 3 13 13 O 1.21289 * 119.99919 * 245.00256 * 12 2 1 14 14 N 1.34775 * 120.00374 * 65.27560 * 12 2 1 15 15 C 1.39932 * 120.00213 * 174.60119 * 14 12 2 16 16 C 1.39289 * 119.94816 * 146.36810 * 15 14 12 17 17 C 1.38493 * 120.43003 * 179.97438 * 16 15 14 18 18 C 1.37684 * 120.31997 * 0.02562 * 17 16 15 19 19 C 1.40741 * 119.88663 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21350 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00368 * 151.73968 * 20 19 18 22 22 C 1.39929 * 119.99503 * 331.74311 * 20 19 18 23 23 N 1.30826 * 120.00808 * 349.00510 * 22 20 19 24 24 Si 1.86808 * 119.99772 * 169.00120 * 22 20 19 25 25 H 1.48502 * 109.46696 * 89.99917 * 24 22 20 26 26 H 1.48493 * 109.47299 * 210.00149 * 24 22 20 27 27 H 1.48504 * 109.47169 * 330.00222 * 24 22 20 28 28 C 1.38245 * 119.94535 * 326.09053 * 15 14 12 29 29 H 1.08998 * 109.46466 * 60.00315 * 1 2 3 30 30 H 1.08995 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47322 * 300.00399 * 1 2 3 32 32 H 1.08999 * 109.47400 * 300.00061 * 5 4 2 33 33 H 1.08997 * 109.47371 * 60.00485 * 5 4 2 34 34 H 1.09004 * 110.84862 * 337.31892 * 8 6 5 35 35 H 1.09003 * 110.85263 * 100.93486 * 8 6 5 36 36 H 1.08997 * 111.12355 * 276.21121 * 9 8 6 37 37 H 1.09005 * 111.12360 * 152.05156 * 9 8 6 38 38 H 1.08998 * 110.30870 * 204.64243 * 10 9 8 39 39 H 1.08999 * 110.39545 * 82.51187 * 10 9 8 40 40 H 0.97001 * 119.99418 * 354.59317 * 14 12 2 41 41 H 1.08004 * 119.78833 * 359.97438 * 16 15 14 42 42 H 1.07999 * 119.83987 * 179.97438 * 17 16 15 43 43 H 1.08003 * 120.05765 * 179.97438 * 18 17 16 44 44 H 0.96994 * 120.00820 * 180.02562 * 23 22 20 45 45 H 1.07991 * 120.16214 * 0.02685 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1999 0.1831 2.2941 6 6 2.7088 -0.6405 3.4790 7 1 2.0299 -1.4714 3.6705 8 6 2.8114 0.2542 4.7330 9 6 4.1233 -0.2517 5.3924 10 6 4.9633 -0.6085 4.1402 11 8 4.0208 -1.1403 3.1955 12 6 2.0324 -0.7104 -1.2304 13 8 2.6531 -1.7467 -1.1213 14 7 1.7969 -0.1913 -2.4517 15 6 2.3585 -0.7883 -3.5858 16 6 1.6625 -0.7806 -4.7924 17 6 2.2091 -1.3681 -5.9212 18 6 3.4474 -1.9671 -5.8626 19 6 4.1623 -1.9826 -4.6504 20 6 5.4349 -2.5955 -4.5825 21 1 6.1644 -2.2474 -3.8663 22 6 5.7489 -3.6528 -5.4436 23 7 4.8087 -4.2167 -6.1574 24 14 7.5110 -4.2594 -5.5739 25 1 7.7401 -5.3331 -4.5739 26 1 7.7508 -4.7942 -6.9383 27 1 8.4429 -3.1329 -5.3130 28 6 3.6056 -1.3798 -3.5084 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.9318 0.9514 2.0451 33 1 1.2537 0.6548 2.5589 34 1 2.8973 1.3045 4.4543 35 1 1.9589 0.0955 5.3935 36 1 3.9397 -1.1333 6.0066 37 1 4.6005 0.5373 5.9737 38 1 5.7137 -1.3588 4.3892 39 1 5.4411 0.2840 3.7363 40 1 1.2380 0.5960 -2.5444 41 1 0.6903 -0.3135 -4.8481 42 1 1.6610 -1.3569 -6.8517 43 1 3.8695 -2.4243 -6.7454 44 1 5.0263 -4.9499 -6.7539 45 1 4.1477 -1.3827 -2.5744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456722412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:55 Heat of formation + Delta-G solvation = -107.429063 kcal Electronic energy + Delta-G solvation = -26359.700342 eV Core-core repulsion = 22534.977575 eV Total energy + Delta-G solvation = -3824.722767 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.01652 -39.56423 -37.80973 -36.73207 -34.36312 -33.06982 -32.46469 -31.89254 -30.21542 -29.74959 -27.94499 -25.83847 -25.24304 -24.11002 -22.04858 -21.41363 -21.29409 -20.77312 -19.45945 -17.80247 -17.32368 -16.94687 -16.68228 -16.10499 -15.51216 -15.22090 -15.00424 -14.70361 -14.52686 -14.46504 -13.92352 -13.60355 -13.41770 -12.94964 -12.91273 -12.77655 -12.45702 -12.20765 -12.01512 -12.00292 -11.66022 -11.57111 -11.47636 -11.30129 -11.19339 -11.12957 -11.02983 -10.58369 -10.44201 -10.05905 -9.83144 -9.67476 -9.61880 -9.32011 -9.02244 -8.74434 -7.35324 -6.83199 -6.59686 -4.27719 2.66225 2.90316 3.06382 3.15050 3.20191 3.25813 3.44239 3.64181 3.97906 4.05080 4.15097 4.50405 4.62187 4.72444 4.75833 4.86799 4.95525 4.96654 5.05042 5.09127 5.16888 5.29576 5.33680 5.41781 5.47319 5.56786 5.59163 5.68004 5.77998 5.86945 5.99648 6.28678 6.43470 6.81511 6.86907 7.02247 7.09726 7.13992 7.16813 7.34434 7.63981 7.79209 8.02966 8.16486 8.23642 8.35016 8.71459 8.81564 9.02004 9.05225 10.33767 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003097 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.356840 B = 9039.819309 C =10976.135517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.072 3.928 3 H 0.083 0.917 4 O -0.344 6.344 5 C 0.050 3.950 6 C 0.083 3.917 7 H 0.089 0.911 8 C -0.148 4.148 9 C -0.156 4.156 10 C 0.045 3.955 11 O -0.361 6.361 12 C 0.501 3.499 13 O -0.487 6.487 14 N -0.668 5.668 15 C 0.151 3.849 16 C -0.259 4.259 17 C -0.095 4.095 18 C -0.168 4.168 19 C 0.119 3.881 20 C -0.457 4.457 21 H 0.076 0.924 22 C 0.073 3.927 23 N -0.802 5.802 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.262 1.262 28 C -0.208 4.208 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.396 0.604 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.278 0.722 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 11.796 17.920 22.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.011 3.989 3 H 0.100 0.900 4 O -0.262 6.262 5 C -0.028 4.028 6 C 0.025 3.975 7 H 0.107 0.893 8 C -0.186 4.186 9 C -0.193 4.193 10 C -0.032 4.032 11 O -0.279 6.279 12 C 0.286 3.714 13 O -0.358 6.358 14 N -0.315 5.315 15 C 0.060 3.940 16 C -0.281 4.281 17 C -0.114 4.114 18 C -0.188 4.188 19 C 0.116 3.884 20 C -0.487 4.487 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.428 5.428 24 Si 0.736 3.264 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.186 1.186 28 C -0.229 4.229 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.230 0.770 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.089 0.911 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.642 10.495 17.734 21.365 hybrid contribution 0.207 0.496 0.053 0.540 sum -5.435 10.991 17.786 21.603 Atomic orbital electron populations 1.22238 0.93856 1.03957 1.02708 1.21895 0.94791 0.96105 0.86156 0.89953 1.88139 1.86392 1.33170 1.18454 1.23042 0.99220 0.93271 0.87229 1.22741 0.86374 0.96363 0.91997 0.89294 1.23116 0.99036 1.00226 0.96214 1.23276 0.95610 1.02069 0.98369 1.23433 0.92749 0.99103 0.87918 1.88658 1.16254 1.69525 1.53508 1.20300 0.81169 0.85946 0.84015 1.90811 1.37527 1.21773 1.85735 1.43381 1.51567 1.31189 1.05331 1.17411 0.92969 0.98897 0.84723 1.20043 1.00334 1.14123 0.93554 1.20477 0.96297 0.98626 0.95957 1.21404 0.95523 1.03183 0.98660 1.17510 0.92553 0.88565 0.89787 1.19549 0.98965 1.13844 1.16341 0.90558 1.25878 0.98961 0.95700 0.93752 1.69799 1.33544 1.18900 1.20542 0.86271 0.82476 0.79573 0.78123 1.19491 1.20217 1.18567 1.21005 0.94424 1.09000 0.98475 0.90958 0.90903 0.91550 0.92815 0.92340 0.90247 0.89598 0.90178 0.89834 0.89587 0.92259 0.77000 0.89304 0.89030 0.86070 0.91063 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 9.47 37.16 0.35 -1.44 16 2 C 0.07 1.01 3.13 -27.88 -0.09 0.92 16 3 H 0.08 0.91 7.79 -51.93 -0.40 0.51 16 4 O -0.34 -5.49 9.51 -58.82 -0.56 -6.05 16 5 C 0.05 0.56 5.28 37.16 0.20 0.75 16 6 C 0.08 0.92 3.81 -26.00 -0.10 0.82 16 7 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 8 C -0.15 -1.03 6.54 -24.78 -0.16 -1.19 16 9 C -0.16 -1.07 7.16 -24.48 -0.18 -1.25 16 10 C 0.04 0.44 7.78 38.19 0.30 0.74 16 11 O -0.36 -5.19 11.00 -37.80 -0.42 -5.60 16 12 C 0.50 9.77 6.91 -10.99 -0.08 9.70 16 13 O -0.49 -12.37 14.22 -14.31 -0.20 -12.58 16 14 N -0.67 -12.34 5.31 -9.91 -0.05 -12.40 16 15 C 0.15 3.55 6.26 -83.77 -0.52 3.02 16 16 C -0.26 -5.83 9.97 -39.10 -0.39 -6.22 16 17 C -0.09 -2.26 10.02 -39.69 -0.40 -2.66 16 18 C -0.17 -4.53 8.66 -38.84 -0.34 -4.87 16 19 C 0.12 3.39 5.55 -106.85 -0.59 2.79 16 20 C -0.46 -13.02 9.06 -37.74 -0.34 -13.36 16 21 H 0.08 2.12 7.87 -52.49 -0.41 1.71 16 22 C 0.07 1.96 5.25 -17.35 -0.09 1.87 16 23 N -0.80 -21.86 10.82 55.55 0.60 -21.26 16 24 Si 0.91 19.88 29.57 -169.99 -5.03 14.85 16 25 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 27 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 28 C -0.21 -5.62 8.39 -38.68 -0.32 -5.94 16 29 H 0.07 0.63 7.78 -51.93 -0.40 0.23 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.54 7.87 -51.93 -0.41 0.13 16 32 H 0.05 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.06 0.47 7.87 -51.93 -0.41 0.07 16 34 H 0.08 0.47 7.85 -51.93 -0.41 0.06 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.40 5.45 8.44 -40.82 -0.34 5.11 16 41 H 0.09 1.70 8.06 -52.48 -0.42 1.28 16 42 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.12 3.35 6.18 -52.48 -0.32 3.02 16 44 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 45 H 0.11 3.01 6.44 -52.49 -0.34 2.67 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -35.58 372.58 -9.61 -45.19 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.81 Total: 8.54 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -2.75 Total: -16.32 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.55 Total: -33.65 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.18 Total: -24.23 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.58 -9.61 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456722412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.234 kcal (2) G-P(sol) polarization free energy of solvation -35.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds