Wall clock time and date at job start Tue Mar 31 2020 11:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.47182 * 2 1 4 4 O 1.42900 * 109.46602 * 119.99450 * 2 1 3 5 5 C 1.42896 * 114.00209 * 270.00068 * 4 2 1 6 6 C 1.53004 * 109.47017 * 180.02562 * 5 4 2 7 7 H 1.09000 * 109.82563 * 305.56565 * 6 5 4 8 8 C 1.54383 * 109.82931 * 184.58888 * 6 5 4 9 9 C 1.55305 * 102.25378 * 219.12915 * 8 6 5 10 10 C 1.54947 * 100.94054 * 34.13509 * 9 8 6 11 11 O 1.43233 * 109.83053 * 66.45844 * 6 5 4 12 12 C 1.50693 * 109.47474 * 239.99924 * 2 1 3 13 13 O 1.21289 * 119.99919 * 245.00256 * 12 2 1 14 14 N 1.34775 * 120.00374 * 65.27560 * 12 2 1 15 15 C 1.39932 * 120.00213 * 174.60119 * 14 12 2 16 16 C 1.39289 * 119.94816 * 146.36810 * 15 14 12 17 17 C 1.38493 * 120.43003 * 179.97438 * 16 15 14 18 18 C 1.37684 * 120.31997 * 0.02562 * 17 16 15 19 19 C 1.40741 * 119.88663 * 359.97438 * 18 17 16 20 20 C 1.41409 * 120.21350 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00368 * 151.73968 * 20 19 18 22 22 C 1.39929 * 119.99503 * 331.74311 * 20 19 18 23 23 N 1.30826 * 120.00808 * 349.00510 * 22 20 19 24 24 Si 1.86808 * 119.99772 * 169.00120 * 22 20 19 25 25 H 1.48502 * 109.46696 * 89.99917 * 24 22 20 26 26 H 1.48493 * 109.47299 * 210.00149 * 24 22 20 27 27 H 1.48504 * 109.47169 * 330.00222 * 24 22 20 28 28 C 1.38245 * 119.94535 * 326.09053 * 15 14 12 29 29 H 1.08998 * 109.46466 * 60.00315 * 1 2 3 30 30 H 1.08995 * 109.46932 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47322 * 300.00399 * 1 2 3 32 32 H 1.08999 * 109.47400 * 300.00061 * 5 4 2 33 33 H 1.08997 * 109.47371 * 60.00485 * 5 4 2 34 34 H 1.09004 * 110.84862 * 337.31892 * 8 6 5 35 35 H 1.09003 * 110.85263 * 100.93486 * 8 6 5 36 36 H 1.08997 * 111.12355 * 276.21121 * 9 8 6 37 37 H 1.09005 * 111.12360 * 152.05156 * 9 8 6 38 38 H 1.08998 * 110.30870 * 204.64243 * 10 9 8 39 39 H 1.08999 * 110.39545 * 82.51187 * 10 9 8 40 40 H 0.97001 * 119.99418 * 354.59317 * 14 12 2 41 41 H 1.08004 * 119.78833 * 359.97438 * 16 15 14 42 42 H 1.07999 * 119.83987 * 179.97438 * 17 16 15 43 43 H 1.08003 * 120.05765 * 179.97438 * 18 17 16 44 44 H 0.96994 * 120.00820 * 180.02562 * 23 22 20 45 45 H 1.07991 * 120.16214 * 0.02685 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.1999 0.1831 2.2941 6 6 2.7088 -0.6405 3.4790 7 1 2.0299 -1.4714 3.6705 8 6 2.8114 0.2542 4.7330 9 6 4.1233 -0.2517 5.3924 10 6 4.9633 -0.6085 4.1402 11 8 4.0208 -1.1403 3.1955 12 6 2.0324 -0.7104 -1.2304 13 8 2.6531 -1.7467 -1.1213 14 7 1.7969 -0.1913 -2.4517 15 6 2.3585 -0.7883 -3.5858 16 6 1.6625 -0.7806 -4.7924 17 6 2.2091 -1.3681 -5.9212 18 6 3.4474 -1.9671 -5.8626 19 6 4.1623 -1.9826 -4.6504 20 6 5.4349 -2.5955 -4.5825 21 1 6.1644 -2.2474 -3.8663 22 6 5.7489 -3.6528 -5.4436 23 7 4.8087 -4.2167 -6.1574 24 14 7.5110 -4.2594 -5.5739 25 1 7.7401 -5.3331 -4.5739 26 1 7.7508 -4.7942 -6.9383 27 1 8.4429 -3.1329 -5.3130 28 6 3.6056 -1.3798 -3.5084 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 2.9318 0.9514 2.0451 33 1 1.2537 0.6548 2.5589 34 1 2.8973 1.3045 4.4543 35 1 1.9589 0.0955 5.3935 36 1 3.9397 -1.1333 6.0066 37 1 4.6005 0.5373 5.9737 38 1 5.7137 -1.3588 4.3892 39 1 5.4411 0.2840 3.7363 40 1 1.2380 0.5960 -2.5444 41 1 0.6903 -0.3135 -4.8481 42 1 1.6610 -1.3569 -6.8517 43 1 3.8695 -2.4243 -6.7454 44 1 5.0263 -4.9499 -6.7539 45 1 4.1477 -1.3827 -2.5744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456722412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:54 Heat of formation + Delta-G solvation = -131.571234 kcal Electronic energy + Delta-G solvation = -26360.747225 eV Core-core repulsion = 22534.977575 eV Total energy + Delta-G solvation = -3825.769650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.44810 -40.53176 -39.30313 -38.28055 -36.21791 -34.91797 -33.28565 -32.87912 -31.76466 -31.12231 -29.69483 -27.28704 -26.65060 -25.33125 -23.13398 -22.74763 -22.54520 -22.17205 -21.09066 -19.62564 -18.42396 -18.04703 -17.91924 -17.30424 -16.94668 -16.75549 -16.47609 -16.32369 -15.92764 -15.71279 -15.19630 -14.80703 -14.69900 -14.46815 -14.23264 -14.02448 -13.66536 -13.57205 -13.33048 -13.12789 -12.98160 -12.84656 -12.66229 -12.58791 -12.46103 -12.22844 -12.18376 -12.09585 -11.94257 -11.71269 -11.59676 -11.24896 -10.97395 -10.80781 -10.50499 -10.40257 -9.38001 -8.74483 -8.59518 -6.40708 0.83813 0.97312 1.33751 1.45157 1.49496 1.73599 1.86565 2.20652 2.73640 2.76402 3.00591 3.53888 3.62606 3.71460 3.82990 3.88473 3.93317 4.07519 4.15746 4.23856 4.36443 4.44782 4.45616 4.61314 4.62486 4.69321 4.78331 4.79086 4.87594 4.92913 5.02231 5.02593 5.08279 5.10529 5.18389 5.21231 5.24867 5.31900 5.73025 5.82949 6.02112 6.06145 6.10159 6.22948 6.33849 6.63851 6.68316 6.92344 6.98848 7.31657 8.35814 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.003097 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.356840 B = 9039.819309 C =10976.135517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 H 0.119 0.881 4 O -0.388 6.388 5 C 0.045 3.955 6 C 0.070 3.930 7 H 0.077 0.923 8 C -0.136 4.136 9 C -0.147 4.147 10 C 0.032 3.968 11 O -0.411 6.411 12 C 0.493 3.507 13 O -0.558 6.558 14 N -0.652 5.652 15 C 0.156 3.844 16 C -0.243 4.243 17 C -0.093 4.093 18 C -0.192 4.192 19 C 0.086 3.914 20 C -0.504 4.504 21 H 0.062 0.938 22 C 0.032 3.968 23 N -0.831 5.831 24 Si 0.986 3.014 25 H -0.268 1.268 26 H -0.256 1.256 27 H -0.259 1.259 28 C -0.237 4.237 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.424 0.576 41 H 0.138 0.862 42 H 0.127 0.873 43 H 0.107 0.893 44 H 0.288 0.712 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.332 14.297 18.914 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.019 3.981 3 H 0.136 0.864 4 O -0.307 6.307 5 C -0.031 4.031 6 C 0.012 3.988 7 H 0.095 0.905 8 C -0.173 4.173 9 C -0.184 4.184 10 C -0.044 4.044 11 O -0.332 6.332 12 C 0.281 3.719 13 O -0.434 6.434 14 N -0.300 5.300 15 C 0.063 3.937 16 C -0.264 4.264 17 C -0.111 4.111 18 C -0.212 4.212 19 C 0.084 3.916 20 C -0.534 4.534 21 H 0.080 0.920 22 C -0.181 4.181 23 N -0.458 5.458 24 Si 0.806 3.194 25 H -0.193 1.193 26 H -0.180 1.180 27 H -0.183 1.183 28 C -0.259 4.259 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.263 0.737 41 H 0.156 0.844 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.099 0.901 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.859 13.064 18.739 24.158 hybrid contribution 0.762 -0.217 -0.199 0.817 sum -7.097 12.847 18.540 23.646 Atomic orbital electron populations 1.22251 0.90594 1.03439 1.05667 1.21996 0.96907 0.96193 0.82956 0.86355 1.88105 1.86950 1.35670 1.19964 1.23330 1.01254 0.92804 0.85749 1.23005 0.84844 0.96987 0.93940 0.90520 1.23118 0.99756 1.00104 0.94343 1.23264 0.95126 1.02996 0.97027 1.23646 0.92767 0.99051 0.88961 1.88607 1.18304 1.70872 1.55385 1.21571 0.79443 0.85219 0.85655 1.90788 1.40656 1.25218 1.86783 1.43246 1.51144 1.31625 1.03972 1.17517 0.91712 0.97593 0.86884 1.20524 1.01567 1.12203 0.92130 1.20893 0.95121 0.97061 0.98049 1.21375 0.97247 1.04980 0.97635 1.17855 0.93311 0.89505 0.90950 1.19754 0.99615 1.15990 1.18074 0.91980 1.26739 1.03599 0.95053 0.92747 1.69843 1.35566 1.19402 1.21012 0.85170 0.76489 0.78832 0.78939 1.19279 1.18028 1.18296 1.20930 0.96445 1.11424 0.97056 0.88518 0.93147 0.88048 0.92619 0.88327 0.88596 0.87318 0.89954 0.87343 0.89866 0.92008 0.73739 0.84416 0.85506 0.87474 0.90148 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.47 71.98 0.68 -2.18 16 2 C 0.08 2.11 3.13 29.85 0.09 2.20 16 3 H 0.12 2.22 7.79 -2.39 -0.02 2.20 16 4 O -0.39 -12.30 9.51 -126.43 -1.20 -13.51 16 5 C 0.04 0.93 5.28 71.98 0.38 1.31 16 6 C 0.07 1.50 3.81 31.06 0.12 1.62 16 7 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 8 C -0.14 -1.53 6.54 31.86 0.21 -1.33 16 9 C -0.15 -1.76 7.16 32.05 0.23 -1.53 16 10 C 0.03 0.64 7.78 72.65 0.56 1.20 16 11 O -0.41 -12.41 11.00 -146.53 -1.61 -14.02 16 12 C 0.49 19.35 6.91 87.65 0.61 19.95 16 13 O -0.56 -30.07 14.22 15.93 0.23 -29.84 16 14 N -0.65 -23.19 5.31 -303.66 -1.61 -24.80 16 15 C 0.16 7.29 6.26 38.10 0.24 7.53 16 16 C -0.24 -10.35 9.97 22.58 0.23 -10.12 16 17 C -0.09 -4.31 10.02 22.20 0.22 -4.08 16 18 C -0.19 -10.71 8.66 22.75 0.20 -10.51 16 19 C 0.09 5.22 5.55 -21.31 -0.12 5.10 16 20 C -0.50 -30.78 9.06 23.46 0.21 -30.56 16 21 H 0.06 3.77 7.87 -2.91 -0.02 3.75 16 22 C 0.03 1.78 5.25 85.25 0.45 2.22 16 23 N -0.83 -47.02 10.82 21.82 0.24 -46.78 16 24 Si 0.99 42.28 29.57 68.60 2.03 44.31 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 26 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 27 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 28 C -0.24 -13.55 8.39 22.85 0.19 -13.36 16 29 H 0.10 1.22 7.78 -2.39 -0.02 1.20 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.12 7.87 -2.39 -0.02 1.10 16 32 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 33 H 0.10 1.21 7.87 -2.39 -0.02 1.19 16 34 H 0.10 0.78 7.85 -2.38 -0.02 0.76 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.11 0.77 8.14 -2.38 -0.02 0.76 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.42 10.15 8.44 -92.71 -0.78 9.36 16 41 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 42 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 43 H 0.11 6.16 6.18 -2.91 -0.02 6.15 16 44 H 0.29 14.61 8.30 -92.71 -0.77 13.84 16 45 H 0.08 4.77 6.44 -2.92 -0.02 4.75 16 Total: -1.00 -87.25 372.58 2.78 -84.47 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.21 Total: 32.69 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 4.50 Total: -32.53 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -1.37 Total: -71.58 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -2.59 Total: -57.37 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Total: -87.25 2.78 -84.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456722412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.097 kcal (2) G-P(sol) polarization free energy of solvation -87.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds