Wall clock time and date at job start Tue Mar 31 2020 11:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47193 * 2 1 4 4 O 1.42894 * 109.47090 * 240.00030 * 2 1 3 5 5 C 1.42897 * 114.00309 * 90.00085 * 4 2 1 6 6 C 1.52998 * 109.47407 * 180.02562 * 5 4 2 7 7 H 1.09004 * 110.27413 * 54.29687 * 6 5 4 8 8 C 1.54944 * 110.31252 * 176.39005 * 6 5 4 9 9 C 1.55409 * 100.89763 * 155.28733 * 8 6 5 10 10 C 1.54387 * 102.30761 * 325.99010 * 9 8 6 11 11 O 1.43236 * 107.58749 * 21.28411 * 10 9 8 12 12 C 1.50703 * 109.47153 * 119.99935 * 2 1 3 13 13 O 1.21285 * 119.99818 * 119.99713 * 12 2 1 14 14 N 1.34779 * 119.99664 * 299.99823 * 12 2 1 15 15 C 1.39939 * 119.99557 * 174.85869 * 14 12 2 16 16 C 1.39291 * 119.94589 * 326.27549 * 15 14 12 17 17 C 1.38495 * 120.42953 * 180.02562 * 16 15 14 18 18 C 1.37692 * 120.31513 * 359.69030 * 17 16 15 19 19 C 1.40732 * 119.88552 * 0.56129 * 18 17 16 20 20 C 1.41412 * 120.20743 * 179.74193 * 19 18 17 21 21 H 1.08000 * 120.00112 * 331.74785 * 20 19 18 22 22 C 1.39936 * 119.99792 * 151.47360 * 20 19 18 23 23 N 1.30824 * 120.00335 * 349.25867 * 22 20 19 24 24 Si 1.86800 * 119.99791 * 169.25308 * 22 20 19 25 25 H 1.48507 * 109.46787 * 90.00133 * 24 22 20 26 26 H 1.48493 * 109.47300 * 210.00018 * 24 22 20 27 27 H 1.48498 * 109.47180 * 330.00230 * 24 22 20 28 28 C 1.38239 * 119.94753 * 146.29748 * 15 14 12 29 29 H 1.08997 * 109.47086 * 59.99775 * 1 2 3 30 30 H 1.08995 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46991 * 300.00189 * 1 2 3 32 32 H 1.09000 * 109.47277 * 299.99938 * 5 4 2 33 33 H 1.08997 * 109.47197 * 59.99978 * 5 4 2 34 34 H 1.09002 * 111.12539 * 273.27648 * 8 6 5 35 35 H 1.09008 * 111.12465 * 37.43642 * 8 6 5 36 36 H 1.09007 * 110.88616 * 207.75769 * 9 8 6 37 37 H 1.08996 * 110.93965 * 84.24931 * 9 8 6 38 38 H 1.09001 * 109.83368 * 261.77156 * 10 9 8 39 39 H 1.08997 * 109.90526 * 140.84035 * 10 9 8 40 40 H 0.96994 * 120.00085 * 354.85537 * 14 12 2 41 41 H 1.08001 * 119.78808 * 0.02562 * 16 15 14 42 42 H 1.07994 * 119.83904 * 179.97438 * 17 16 15 43 43 H 1.07996 * 120.05114 * 180.30547 * 18 17 16 44 44 H 0.97000 * 120.00713 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.16125 * 359.95939 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.2001 0.1829 -2.2940 6 6 2.7079 -0.6408 -3.4791 7 1 2.0345 -1.4752 -3.6753 8 6 2.8385 0.2524 -4.7384 9 6 3.9121 -0.5308 -5.5441 10 6 4.8071 -1.1072 -4.4260 11 8 4.0360 -1.1224 -3.2190 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.0820 -0.9686 3.5951 16 6 2.1274 -2.3602 3.5563 17 6 2.4969 -3.0816 4.6793 18 6 2.8298 -2.4298 5.8456 19 6 2.7833 -1.0243 5.9013 20 6 3.1185 -0.3481 7.0971 21 1 2.9687 -0.8317 8.0511 22 6 3.6496 0.9454 7.0442 23 7 4.0322 1.4491 5.8990 24 14 3.8123 1.9531 8.6087 25 1 5.1401 1.7008 9.2241 26 1 3.6835 3.3962 8.2836 27 1 2.7426 1.5630 9.5621 28 6 2.4066 -0.2964 4.7587 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2538 0.6546 -2.5589 33 1 2.9320 0.9513 -2.0450 34 1 1.8959 0.3034 -5.2834 35 1 3.1938 1.2495 -4.4777 36 1 4.4803 0.1400 -6.1887 37 1 3.4552 -1.3309 -6.1265 38 1 5.6869 -0.4772 -4.2948 39 1 5.1136 -2.1215 -4.6818 40 1 1.2124 0.5798 2.5449 41 1 1.8729 -2.8801 2.6445 42 1 2.5285 -4.1603 4.6387 43 1 3.1221 -2.9963 6.7174 44 1 4.4007 2.3457 5.8623 45 1 2.3719 0.7826 4.7897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456722414.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:59 Heat of formation + Delta-G solvation = -130.761328 kcal Electronic energy + Delta-G solvation = -26256.998637 eV Core-core repulsion = 22431.264107 eV Total energy + Delta-G solvation = -3825.734530 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.43382 -40.48085 -39.31807 -38.30257 -36.00756 -35.15409 -33.30711 -32.92043 -31.46864 -31.17625 -29.88251 -27.19825 -26.62049 -25.30441 -23.16740 -22.75330 -22.45498 -22.27808 -21.13371 -19.27516 -18.66390 -18.13928 -17.86310 -17.24149 -16.97551 -16.71952 -16.47937 -16.24898 -15.93700 -15.80308 -15.19919 -14.83469 -14.55956 -14.45323 -14.23700 -14.10292 -13.70550 -13.57035 -13.34522 -13.07878 -12.94454 -12.77315 -12.68787 -12.64920 -12.43412 -12.21519 -12.13193 -12.07257 -11.81507 -11.73233 -11.68638 -11.24514 -11.01495 -10.79911 -10.50116 -10.41216 -9.29806 -8.80090 -8.54791 -6.37770 0.78667 1.03210 1.41216 1.49162 1.55656 1.72680 1.86636 2.23952 2.74950 2.80914 2.91502 3.53451 3.60604 3.70749 3.85045 3.88514 3.96398 4.05920 4.14239 4.24442 4.36537 4.43812 4.48215 4.56903 4.67944 4.71144 4.78516 4.80613 4.83530 4.87455 4.96349 5.00070 5.10882 5.15351 5.18029 5.20010 5.23358 5.36591 5.77522 5.83042 5.99082 6.04233 6.09054 6.18873 6.34591 6.58064 6.72749 6.94802 6.97488 7.27154 8.38804 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.019019 B = 0.002522 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.841643 B =11098.259718 C =11458.858814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.080 3.920 3 H 0.115 0.885 4 O -0.385 6.385 5 C 0.054 3.946 6 C 0.072 3.928 7 H 0.072 0.928 8 C -0.138 4.138 9 C -0.147 4.147 10 C 0.034 3.966 11 O -0.413 6.413 12 C 0.499 3.501 13 O -0.557 6.557 14 N -0.653 5.653 15 C 0.149 3.851 16 C -0.238 4.238 17 C -0.089 4.089 18 C -0.243 4.243 19 C 0.089 3.911 20 C -0.495 4.495 21 H 0.078 0.922 22 C 0.033 3.967 23 N -0.833 5.833 24 Si 0.987 3.013 25 H -0.267 1.267 26 H -0.265 1.265 27 H -0.257 1.257 28 C -0.195 4.195 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.418 0.582 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.287 0.713 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.693 6.509 -20.828 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.019 3.981 3 H 0.132 0.868 4 O -0.303 6.303 5 C -0.022 4.022 6 C 0.015 3.985 7 H 0.090 0.910 8 C -0.175 4.175 9 C -0.184 4.184 10 C -0.042 4.042 11 O -0.333 6.333 12 C 0.287 3.713 13 O -0.434 6.434 14 N -0.300 5.300 15 C 0.056 3.944 16 C -0.259 4.259 17 C -0.107 4.107 18 C -0.263 4.263 19 C 0.086 3.914 20 C -0.525 4.525 21 H 0.096 0.904 22 C -0.181 4.181 23 N -0.459 5.459 24 Si 0.808 3.192 25 H -0.192 1.192 26 H -0.189 1.189 27 H -0.181 1.181 28 C -0.216 4.216 29 H 0.120 0.880 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.256 0.744 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.122 0.878 44 H 0.097 0.903 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.999 5.757 -20.905 22.497 hybrid contribution 0.315 0.589 0.709 0.974 sum -5.683 6.345 -20.196 21.919 Atomic orbital electron populations 1.22238 0.90683 1.03595 1.05403 1.21944 0.96737 0.96293 0.83104 0.86775 1.88073 1.86966 1.35494 1.19804 1.23067 1.01259 0.92619 0.85230 1.23214 0.84530 0.96552 0.94238 0.91038 1.23269 1.01495 0.99050 0.93694 1.23134 0.96933 1.00817 0.97537 1.23358 0.95202 1.01275 0.84393 1.88575 1.24402 1.86955 1.33377 1.21432 0.79567 0.85055 0.85269 1.90707 1.37587 1.28201 1.86875 1.43314 1.56382 1.26540 1.03762 1.17680 0.99245 0.90976 0.86536 1.20501 1.14341 0.92557 0.98515 1.20741 0.98497 0.98788 0.92710 1.21256 1.12216 0.94653 0.98127 1.17812 0.88384 0.91689 0.93471 1.19785 1.39017 1.00007 0.93722 0.90384 1.26759 0.91988 0.98265 1.01073 1.69859 1.30803 1.16904 1.28382 0.85135 0.79495 0.77200 0.77406 1.19225 1.18932 1.18118 1.21091 1.07647 0.99611 0.93297 0.87974 0.92709 0.89216 0.88009 0.92547 0.86917 0.89213 0.87786 0.89503 0.91161 0.91579 0.74422 0.88418 0.86375 0.87847 0.90287 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.43 71.98 0.68 -2.40 16 2 C 0.08 2.17 3.14 29.85 0.09 2.26 16 3 H 0.11 2.38 7.79 -2.39 -0.02 2.36 16 4 O -0.38 -11.93 9.52 -127.37 -1.21 -13.14 16 5 C 0.05 1.13 5.45 71.98 0.39 1.52 16 6 C 0.07 1.49 3.72 31.26 0.12 1.61 16 7 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 8 C -0.14 -1.55 6.58 32.09 0.21 -1.34 16 9 C -0.15 -1.66 7.02 31.89 0.22 -1.44 16 10 C 0.03 0.65 7.80 72.45 0.56 1.22 16 11 O -0.41 -11.95 11.04 -148.29 -1.64 -13.58 16 12 C 0.50 19.72 6.97 87.66 0.61 20.33 16 13 O -0.56 -28.37 14.20 15.99 0.23 -28.14 16 14 N -0.65 -25.46 5.19 -303.64 -1.58 -27.03 16 15 C 0.15 7.32 6.26 38.10 0.24 7.55 16 16 C -0.24 -12.09 8.66 22.58 0.20 -11.89 16 17 C -0.09 -4.37 10.02 22.20 0.22 -4.15 16 18 C -0.24 -12.65 9.79 22.75 0.22 -12.42 16 19 C 0.09 4.97 5.56 -21.31 -0.12 4.85 16 20 C -0.50 -26.90 9.06 23.46 0.21 -26.68 16 21 H 0.08 4.06 7.87 -2.91 -0.02 4.04 16 22 C 0.03 1.65 5.26 85.25 0.45 2.09 16 23 N -0.83 -43.54 10.81 21.82 0.24 -43.31 16 24 Si 0.99 38.04 29.57 68.60 2.03 40.07 16 25 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 26 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 27 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 28 C -0.19 -10.34 8.57 22.85 0.20 -10.15 16 29 H 0.10 1.25 7.87 -2.39 -0.02 1.23 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.42 7.69 -2.39 -0.02 1.41 16 32 H 0.10 1.26 7.87 -2.39 -0.02 1.24 16 33 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.09 0.88 8.06 -2.38 -0.02 0.86 16 36 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.42 12.70 8.40 -92.71 -0.78 11.92 16 41 H 0.10 5.01 6.42 -2.91 -0.02 4.99 16 42 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 43 H 0.10 5.02 8.06 -2.91 -0.02 4.99 16 44 H 0.29 13.52 8.30 -92.71 -0.77 12.75 16 45 H 0.12 6.38 6.18 -2.91 -0.02 6.36 16 Total: -1.00 -78.46 372.55 2.79 -75.67 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: 0.22 Total: 38.50 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 4.51 Total: -29.03 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -1.34 Total: -70.34 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -2.62 Total: -54.87 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -78.46 2.79 -75.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456722414.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.094 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds