Wall clock time and date at job start Tue Mar 31 2020 12:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21247 * 120.00206 * 2 1 4 4 C 1.47181 * 119.99461 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.14908 * 359.97438 * 4 2 1 6 6 C 1.37891 * 119.93864 * 180.02562 * 5 4 2 7 7 C 1.38339 * 120.23434 * 359.97438 * 6 5 4 8 8 C 1.38845 * 120.29345 * 0.02562 * 7 6 5 9 9 O 1.35919 * 119.97211 * 179.97438 * 8 7 6 10 10 C 1.42900 * 116.99470 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.46570 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00303 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99446 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99748 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47098 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.47189 * 300.00448 * 15 14 13 17 17 C 1.53002 * 109.46878 * 60.00678 * 15 14 13 18 18 C 1.50696 * 109.47119 * 180.02562 * 15 14 13 19 19 H 1.08009 * 119.99895 * 0.02562 * 18 15 14 20 20 C 1.37873 * 120.00246 * 180.02562 * 18 15 14 21 21 N 1.31514 * 120.00127 * 0.02562 * 20 18 15 22 22 Si 1.86798 * 120.00118 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47409 * 59.99783 * 22 20 18 24 24 H 1.48501 * 109.47110 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46959 * 299.99543 * 22 20 18 26 26 C 1.38431 * 120.05993 * 359.97438 * 8 7 6 27 27 H 1.08995 * 109.47613 * 240.00130 * 1 2 3 28 28 H 1.08998 * 109.47126 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47102 * 119.99807 * 1 2 3 30 30 H 1.08001 * 120.03042 * 359.97438 * 5 4 2 31 31 H 1.08002 * 119.88601 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.85413 * 180.02562 * 7 6 5 33 33 H 1.08992 * 109.47381 * 299.99874 * 10 9 8 34 34 H 1.08995 * 109.46844 * 60.00466 * 10 9 8 35 35 H 0.97002 * 120.00665 * 0.02562 * 13 11 10 36 36 H 1.08997 * 109.47066 * 300.00786 * 14 13 11 37 37 H 1.09000 * 109.46920 * 60.00296 * 14 13 11 38 38 H 1.09000 * 109.47190 * 60.00193 * 16 15 14 39 39 H 1.09005 * 109.46982 * 180.02562 * 16 15 14 40 40 H 1.09000 * 109.46928 * 299.99933 * 16 15 14 41 41 H 1.08992 * 109.47700 * 59.99616 * 17 15 14 42 42 H 1.09000 * 109.47057 * 180.02562 * 17 15 14 43 43 H 1.09000 * 109.46723 * 299.99336 * 17 15 14 44 44 H 0.96997 * 120.00564 * 180.02562 * 21 20 18 45 45 H 1.07997 * 120.11481 * 180.27741 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2747 0.0006 5 6 1.5465 -2.4878 0.0017 6 6 2.2402 -3.6795 0.0027 7 6 3.6236 -3.6802 0.0022 8 6 4.3246 -2.4817 0.0011 9 8 5.6837 -2.4900 0.0011 10 6 6.3246 -3.7672 0.0028 11 6 7.8198 -3.5789 0.0019 12 8 8.2903 -2.4611 0.0005 13 7 8.6342 -4.6528 0.0038 14 6 10.0878 -4.4699 0.0024 15 6 10.7739 -5.8374 0.0043 16 6 10.3589 -6.6145 1.2552 17 6 10.3572 -6.6188 -1.2433 18 6 12.2691 -5.6491 0.0035 19 1 12.6881 -4.6536 0.0021 20 6 13.1022 -6.7477 0.0044 21 7 12.5922 -7.9598 0.0055 22 14 14.9556 -6.5143 0.0041 23 1 15.3594 -5.7568 1.2159 24 1 15.6216 -7.8416 0.0046 25 1 15.3592 -5.7591 -1.2092 26 6 3.6404 -1.2782 0.0000 27 1 -0.3634 -0.5138 0.8899 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 0.4665 -2.4911 0.0025 31 1 1.7017 -4.6157 0.0031 32 1 4.1607 -4.6171 0.0026 33 1 6.0283 -4.3212 0.8935 34 1 6.0283 -4.3235 -0.8864 35 1 8.2580 -5.5469 0.0053 36 1 10.3834 -3.9166 -0.8890 37 1 10.3847 -3.9127 0.8909 38 1 9.2774 -6.7506 1.2562 39 1 10.8481 -7.5885 1.2568 40 1 10.6558 -6.0577 2.1440 41 1 10.6528 -6.0653 -2.1344 42 1 10.8456 -7.5932 -1.2417 43 1 9.2757 -6.7550 -1.2422 44 1 13.1782 -8.7327 0.0066 45 1 4.1848 -0.3455 -0.0053 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458027549.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:58 Heat of formation + Delta-G solvation = -90.472163 kcal Electronic energy + Delta-G solvation = -25626.579723 eV Core-core repulsion = 21802.592263 eV Total energy + Delta-G solvation = -3823.987461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.75937 -39.76441 -38.94546 -37.30450 -36.32548 -33.40800 -32.05480 -31.46825 -30.95355 -29.46064 -28.42799 -25.79579 -25.59967 -24.85434 -23.88458 -22.73171 -20.69450 -20.02687 -18.88298 -18.33952 -17.26332 -16.59648 -16.48083 -16.21303 -15.88700 -15.59956 -15.35450 -15.17393 -14.78896 -14.51197 -14.46554 -14.08188 -13.47996 -13.16516 -13.10213 -12.90607 -12.70409 -12.67847 -12.42178 -12.26226 -12.25523 -11.48463 -11.40737 -11.28581 -11.23745 -10.88732 -10.76833 -10.44878 -10.24857 -10.16757 -9.70502 -9.67172 -9.42375 -9.33702 -8.85819 -8.60539 -8.54982 -8.39170 -6.06574 -4.16760 0.26004 1.04731 2.04410 2.53962 2.82318 3.27901 3.32178 3.36000 3.41688 3.60704 3.90732 4.35658 4.37964 4.50414 4.60613 4.72256 4.76939 4.85777 4.91672 4.96128 4.96158 5.06520 5.19894 5.20355 5.53052 5.54627 5.86538 5.93735 5.96381 6.12684 6.24901 6.25777 6.42927 6.67983 6.74288 6.83878 6.89551 6.94836 7.06608 7.14451 7.28393 7.48982 7.64468 7.88232 7.94829 8.07972 8.32354 8.52149 8.83451 9.49293 10.94854 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.037616 B = 0.001986 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.194868 B =14095.342452 C =14637.865906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.394 3.606 3 O -0.452 6.452 4 C -0.136 4.136 5 C -0.115 4.115 6 C -0.091 4.091 7 C -0.181 4.181 8 C 0.124 3.876 9 O -0.285 6.285 10 C 0.039 3.961 11 C 0.506 3.494 12 O -0.527 6.527 13 N -0.712 5.712 14 C 0.133 3.867 15 C 0.056 3.944 16 C -0.131 4.131 17 C -0.131 4.131 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.092 4.092 27 H 0.095 0.905 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.399 0.601 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.006 0.994 39 H 0.086 0.914 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.086 0.914 43 H 0.006 0.994 44 H 0.261 0.739 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.346 4.168 -0.002 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.272 3.728 3 O -0.327 6.327 4 C -0.137 4.137 5 C -0.133 4.133 6 C -0.109 4.109 7 C -0.200 4.200 8 C 0.078 3.922 9 O -0.197 6.197 10 C -0.040 4.040 11 C 0.289 3.711 12 O -0.403 6.403 13 N -0.364 5.364 14 C 0.011 3.989 15 C 0.055 3.945 16 C -0.189 4.189 17 C -0.189 4.189 18 C -0.545 4.545 19 H 0.076 0.924 20 C -0.135 4.135 21 N -0.525 5.525 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.111 4.111 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.113 0.887 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.153 0.847 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.234 0.766 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.025 0.975 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.024 0.976 44 H 0.071 0.929 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -24.450 5.508 -0.004 25.063 hybrid contribution 0.770 -0.844 -0.001 1.142 sum -23.681 4.664 -0.004 24.136 Atomic orbital electron populations 1.22235 0.93355 1.05267 1.04636 1.22523 0.91759 0.87409 0.71143 1.90571 1.72189 1.34259 1.35644 1.20287 0.93264 0.95131 1.04985 1.21304 1.00126 0.91256 1.00654 1.20926 0.93304 0.98371 0.98302 1.21591 0.95702 0.97363 1.05328 1.18972 0.82774 0.93952 0.96547 1.86223 1.15518 1.29806 1.88118 1.22619 0.92537 0.85187 1.03673 1.19879 0.87244 0.85778 0.78181 1.90736 1.76858 1.24005 1.48739 1.46178 1.08540 1.08047 1.73676 1.21795 0.75533 1.00735 1.00828 1.18373 0.94766 0.88455 0.92914 1.21841 0.95746 1.03711 0.97596 1.21839 0.95745 1.03716 0.97594 1.20929 0.89628 0.92898 1.51087 0.92429 1.24876 0.98733 0.95171 0.94721 1.69782 1.34691 0.97555 1.50431 0.86615 0.85224 0.77194 0.78724 1.20256 1.21313 1.20262 1.20689 0.92790 0.97262 1.00326 0.88692 0.89611 0.88697 0.84874 0.84924 0.84701 0.88998 0.89008 0.76583 0.92437 0.92428 0.97542 0.89514 0.95355 0.95352 0.89504 0.97551 0.92906 0.83890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.92 8.93 36.01 0.32 -0.59 16 2 C 0.39 3.60 7.23 -30.68 -0.22 3.38 16 3 O -0.45 -5.93 17.08 5.59 0.10 -5.83 16 4 C -0.14 -1.27 5.87 -105.08 -0.62 -1.89 16 5 C -0.11 -0.77 9.47 -39.10 -0.37 -1.14 16 6 C -0.09 -0.62 10.02 -39.67 -0.40 -1.02 16 7 C -0.18 -1.58 9.04 -39.32 -0.36 -1.94 16 8 C 0.12 1.46 6.68 -39.29 -0.26 1.19 16 9 O -0.28 -4.09 9.67 -39.39 -0.38 -4.47 16 10 C 0.04 0.46 5.22 36.01 0.19 0.65 16 11 C 0.51 8.49 7.91 -10.98 -0.09 8.41 16 12 O -0.53 -11.34 16.50 -14.35 -0.24 -11.57 16 13 N -0.71 -11.85 4.96 -60.29 -0.30 -12.15 16 14 C 0.13 2.73 4.50 -4.04 -0.02 2.72 16 15 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 16 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 17 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 18 C -0.51 -13.00 8.01 -34.44 -0.28 -13.27 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 20 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 21 N -0.89 -23.08 9.35 55.43 0.52 -22.56 16 22 Si 0.89 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.09 -1.09 9.54 -38.94 -0.37 -1.46 16 27 H 0.09 0.26 8.08 -51.93 -0.42 -0.16 16 28 H 0.08 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.09 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.13 0.46 7.05 -52.49 -0.37 0.09 16 31 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 32 H 0.14 0.91 6.27 -52.49 -0.33 0.58 16 33 H 0.09 0.84 7.66 -51.93 -0.40 0.45 16 34 H 0.09 0.84 7.65 -51.93 -0.40 0.45 16 35 H 0.40 5.68 6.16 -40.82 -0.25 5.43 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 39 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.09 6.07 -51.93 -0.32 1.77 16 43 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 45 H 0.14 1.87 7.65 -52.49 -0.40 1.47 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -32.01 371.90 -8.16 -40.17 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -6.41 Total: 2.62 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.04 Total: -7.25 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.22 Total: -34.71 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.52 Total: -21.88 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.01 -8.16 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458027549.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.299 kcal (2) G-P(sol) polarization free energy of solvation -32.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds