Wall clock time and date at job start Tue Mar 31 2020 12:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46496 * 109.46975 * 2 1 4 4 C 1.46505 * 120.00107 * 269.99868 * 3 2 1 5 5 C 1.50700 * 109.47093 * 270.00601 * 4 3 2 6 6 H 1.08000 * 119.99937 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00004 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00285 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00020 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47235 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47249 * 119.99712 * 9 7 5 12 12 H 1.48499 * 109.47286 * 239.99747 * 9 7 5 13 13 C 1.34777 * 120.00555 * 90.00094 * 3 2 1 14 14 O 1.21716 * 120.00520 * 180.02562 * 13 3 2 15 15 C 1.46241 * 119.99629 * 359.97438 * 13 3 2 16 16 C 1.35007 * 119.99815 * 180.02562 * 15 13 3 17 17 C 1.46950 * 119.99555 * 180.02562 * 16 15 13 18 18 C 1.39925 * 120.18925 * 0.02562 * 17 16 15 19 19 C 1.38197 * 119.82555 * 179.97438 * 18 17 16 20 20 O 1.35980 * 119.89493 * 180.02562 * 19 18 17 21 21 C 1.42902 * 116.99832 * 180.02562 * 20 19 18 22 22 C 1.38999 * 120.20251 * 359.73329 * 19 18 17 23 23 C 1.38099 * 120.38462 * 0.55314 * 22 19 18 24 24 C 1.38578 * 120.16785 * 359.44197 * 23 22 19 25 25 O 1.35769 * 120.10687 * 180.25663 * 24 23 22 26 26 C 1.42907 * 116.99846 * 0.02562 * 25 24 23 27 27 H 1.08997 * 109.47069 * 59.99754 * 1 2 3 28 28 H 1.08999 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47079 * 300.00209 * 1 2 3 30 30 H 1.08995 * 109.47329 * 239.99768 * 2 1 3 31 31 H 1.09002 * 109.47054 * 119.99781 * 2 1 3 32 32 H 1.09003 * 109.46869 * 30.00225 * 4 3 2 33 33 H 1.08994 * 109.47271 * 149.99720 * 4 3 2 34 34 H 0.96991 * 120.00235 * 180.02562 * 8 7 5 35 35 H 1.08005 * 119.99973 * 0.02562 * 15 13 3 36 36 H 1.07992 * 120.00003 * 0.02562 * 16 15 13 37 37 H 1.08002 * 120.08776 * 0.02562 * 18 17 16 38 38 H 1.08996 * 109.47495 * 59.99776 * 21 20 19 39 39 H 1.08994 * 109.47107 * 180.02562 * 21 20 19 40 40 H 1.09002 * 109.47139 * 300.00038 * 21 20 19 41 41 H 1.07998 * 119.80642 * 180.26975 * 22 19 18 42 42 H 1.08002 * 119.91872 * 179.72636 * 23 22 19 43 43 H 1.09008 * 109.46711 * 59.99612 * 26 25 24 44 44 H 1.08991 * 109.47350 * 179.97438 * 26 25 24 45 45 H 1.08998 * 109.46941 * 300.00123 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7038 6 1 4.3428 1.2308 -1.0958 7 6 4.1494 2.3904 -2.8775 8 7 3.3495 3.1266 -3.6176 9 14 5.9138 2.0974 -3.4164 10 1 6.6014 1.2421 -2.4160 11 1 5.9217 1.4188 -4.7373 12 1 6.6211 3.3986 -3.5241 13 6 2.2430 2.0166 1.1671 14 8 2.6482 3.1644 1.1671 15 6 1.9988 1.3275 2.4336 16 6 2.2233 1.9641 3.6028 17 6 1.9784 1.2714 4.8754 18 6 1.5131 -0.0482 4.8800 19 6 1.2858 -0.6927 6.0812 20 8 0.8341 -1.9753 6.0873 21 6 0.6197 -2.5814 7.3635 22 6 1.5234 -0.0360 7.2830 23 6 1.9771 1.2684 7.2884 24 6 2.2103 1.9295 6.0931 25 8 2.6614 3.2101 6.0999 26 6 2.8749 3.8159 7.3765 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.5817 1.6877 -2.0284 33 1 2.0955 3.1410 -1.1385 34 1 3.6755 3.5170 -4.4434 35 1 1.6388 0.3092 2.4337 36 1 2.5829 2.9824 3.6027 37 1 1.3328 -0.5620 3.9473 38 1 -0.1219 -2.0071 7.9186 39 1 0.2610 -3.6014 7.2256 40 1 1.5569 -2.5984 7.9198 41 1 1.3477 -0.5472 8.2180 42 1 2.1550 1.7729 8.2266 43 1 3.6162 3.2412 7.9319 44 1 3.2345 4.8356 7.2392 45 1 1.9373 3.8326 7.9321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492223916.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:24 Heat of formation + Delta-G solvation = -62.269936 kcal Electronic energy + Delta-G solvation = -26252.113871 eV Core-core repulsion = 22429.349350 eV Total energy + Delta-G solvation = -3822.764520 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.68330 -39.20039 -38.93552 -36.74689 -35.22355 -33.80008 -32.68636 -30.41836 -30.02947 -29.67734 -27.67243 -27.15223 -26.96766 -24.37225 -22.93377 -22.72731 -21.95004 -20.27926 -18.44852 -18.02809 -17.73475 -16.94475 -16.42719 -16.19197 -16.09878 -15.76483 -15.36263 -14.97941 -14.71562 -14.30895 -14.14509 -13.83181 -13.56732 -13.26876 -13.07948 -13.06918 -12.90064 -12.36774 -12.27208 -12.04173 -11.92254 -11.88910 -11.68013 -11.28518 -11.12928 -10.97833 -10.82743 -10.79675 -10.65706 -10.43316 -10.18625 -10.06123 -9.54162 -8.87605 -8.57144 -8.37373 -7.79229 -7.51629 -5.97782 -4.02042 0.53322 1.22357 2.16168 2.98268 3.13897 3.34480 3.41848 3.46612 3.56667 4.01604 4.17610 4.41609 4.46069 4.52795 4.73394 4.81077 4.83182 4.87706 4.92163 5.05278 5.13488 5.18009 5.26834 5.31787 5.35777 5.41167 5.52016 5.57773 5.73243 5.78513 5.91060 5.99138 6.02761 6.13256 6.25494 6.32575 6.56156 6.58958 6.74464 7.04430 7.19291 7.25948 7.53654 7.64841 7.99599 8.31238 8.52919 8.98262 9.20070 9.62902 11.10273 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.014592 B = 0.002962 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.350654 B = 9451.840956 C =10499.034967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 N -0.591 5.591 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.534 3.466 14 O -0.544 6.544 15 C -0.187 4.187 16 C -0.042 4.042 17 C -0.048 4.048 18 C -0.102 4.102 19 C 0.091 3.909 20 O -0.316 6.316 21 C 0.028 3.972 22 C -0.165 4.165 23 C -0.172 4.172 24 C 0.112 3.888 25 O -0.306 6.306 26 C 0.027 3.973 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.262 0.738 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.053 0.947 39 H 0.099 0.901 40 H 0.053 0.947 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.054 0.946 44 H 0.102 0.898 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.794 -9.367 25.490 27.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.019 4.019 3 N -0.322 5.322 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.323 3.677 14 O -0.423 6.423 15 C -0.208 4.208 16 C -0.062 4.062 17 C -0.049 4.049 18 C -0.121 4.121 19 C 0.046 3.954 20 O -0.230 6.230 21 C -0.067 4.067 22 C -0.184 4.184 23 C -0.191 4.191 24 C 0.066 3.934 25 O -0.219 6.219 26 C -0.068 4.068 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.143 0.857 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.148 0.852 42 H 0.150 0.850 43 H 0.073 0.927 44 H 0.120 0.880 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.586 -8.658 24.948 27.216 hybrid contribution 0.929 -0.283 0.259 1.006 sum -5.656 -8.942 25.207 27.338 Atomic orbital electron populations 1.22238 0.96770 1.01365 1.02441 1.21446 0.93519 0.84248 1.02638 1.48157 1.63116 1.13190 1.07728 1.19279 0.96248 0.93717 0.78153 1.21499 0.96937 1.31635 1.06135 0.92373 1.24936 0.97827 0.94982 0.96436 1.69943 1.35573 1.33640 1.14350 0.86447 0.84733 0.78026 0.78248 1.19786 1.21019 1.20916 1.18080 0.79102 0.86465 0.84086 1.90781 1.46219 1.17846 1.87483 1.23349 1.03535 1.00655 0.93237 1.22074 0.94854 0.99940 0.89321 1.18174 1.02530 0.92776 0.91409 1.20514 1.01463 0.93089 0.97004 1.18712 0.98406 0.84553 0.93702 1.86102 1.81274 1.24350 1.31307 1.23025 1.00779 0.98490 0.84391 1.21064 1.04586 0.95641 0.97127 1.20922 1.05412 0.95719 0.97024 1.19036 0.96747 0.84525 0.93107 1.86113 1.80429 1.23998 1.31357 1.23082 1.00751 0.98780 0.84195 0.92084 0.92219 0.92889 0.89981 0.91595 0.94981 0.93823 0.92841 0.85652 0.84072 0.83860 0.92823 0.88268 0.92822 0.85223 0.84979 0.92741 0.88004 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 37.16 0.38 -2.05 16 2 C 0.11 1.79 5.84 -4.04 -0.02 1.77 16 3 N -0.59 -13.19 2.46 -176.77 -0.43 -13.62 16 4 C 0.25 6.64 5.16 -5.19 -0.03 6.61 16 5 C -0.52 -15.30 9.39 -34.44 -0.32 -15.62 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 9 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 10 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 C 0.53 11.99 7.60 -13.05 -0.10 11.89 16 14 O -0.54 -14.56 15.81 5.17 0.08 -14.48 16 15 C -0.19 -3.21 8.61 -37.52 -0.32 -3.53 16 16 C -0.04 -0.69 9.20 -37.20 -0.34 -1.03 16 17 C -0.05 -0.66 5.88 -104.94 -0.62 -1.28 16 18 C -0.10 -1.27 9.34 -38.97 -0.36 -1.63 16 19 C 0.09 1.01 6.67 -39.31 -0.26 0.75 16 20 O -0.32 -3.25 10.49 -19.68 -0.21 -3.45 16 21 C 0.03 0.17 9.81 101.05 0.99 1.16 16 22 C -0.17 -1.55 9.03 -39.35 -0.36 -1.90 16 23 C -0.17 -1.68 9.02 -39.51 -0.36 -2.04 16 24 C 0.11 1.39 6.70 -38.66 -0.26 1.13 16 25 O -0.31 -3.80 9.67 -19.02 -0.18 -3.99 16 26 C 0.03 0.21 9.81 101.05 0.99 1.20 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.07 0.95 6.09 -51.93 -0.32 0.63 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.13 1.76 4.22 -52.48 -0.22 1.54 16 36 H 0.14 2.55 7.09 -52.49 -0.37 2.18 16 37 H 0.14 1.65 6.17 -52.49 -0.32 1.32 16 38 H 0.05 0.26 7.67 -51.93 -0.40 -0.14 16 39 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.27 7.64 -51.93 -0.40 -0.13 16 41 H 0.13 0.85 6.27 -52.49 -0.33 0.52 16 42 H 0.13 0.93 6.29 -52.49 -0.33 0.60 16 43 H 0.05 0.34 7.66 -51.92 -0.40 -0.06 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 LS Contribution 377.48 15.07 5.69 5.69 Total: -1.00 -36.00 377.48 -6.79 -42.79 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.37 Total: -0.94 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.09 Total: -2.92 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.30 Total: -40.09 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.31 Total: -21.92 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -36.00 -6.79 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492223916.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.475 kcal (2) G-P(sol) polarization free energy of solvation -36.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds